HEADER TRANSCRIPTION 07-AUG-12 4GHI TITLE CRYSTAL STRUCTURE OF THE HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND TITLE 2 ARNT C-TERMINAL PAS DOMAINS IN COMPLEX WITH A BENZOXADIAZOLE TITLE 3 ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PAS DOMAIN, UNP RESIDUES 239-350; COMPND 5 SYNONYM: EPAS-1, BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2, CLASS E COMPND 6 BASIC HELIX-LOOP-HELIX PROTEIN 73, BHLHE73, HIF-1-ALPHA-LIKE FACTOR, COMPND 7 HLF, HYPOXIA-INDUCIBLE FACTOR 2-ALPHA, HIF-2-ALPHA, HIF2-ALPHA, COMPND 8 MEMBER OF PAS PROTEIN 2, PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: C-TERMINAL PAS DOMAIN, UNP RESIDUES 356-470; COMPND 15 SYNONYM: ARNT PROTEIN, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 2, COMPND 16 BHLHE2, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, HYPOXIA-INDUCIBLE COMPND 17 FACTOR 1-BETA, HIF-1-BETA, HIF1-BETA; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BHLHE73, EPAS1, HIF2A, MOP2, PASD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-GB1-PARALLEL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ARNT, BHLHE2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHIS-GB1-PARALLEL KEYWDS PAS FOLD, PROTEIN : PROTEIN INTERACTIONS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.H.SCHEUERMANN,J.KEY,U.K.TAMBAR,R.K.BRUICK,K.H.GARDNER REVDAT 3 13-SEP-23 4GHI 1 REMARK SEQADV REVDAT 2 03-APR-13 4GHI 1 JRNL REVDAT 1 27-FEB-13 4GHI 0 JRNL AUTH T.H.SCHEUERMANN,Q.LI,H.W.MA,J.KEY,L.ZHANG,R.CHEN,J.A.GARCIA, JRNL AUTH 2 J.NAIDOO,J.LONGGOOD,D.E.FRANTZ,U.K.TAMBAR,K.H.GARDNER, JRNL AUTH 3 R.K.BRUICK JRNL TITL ALLOSTERIC INHIBITION OF HYPOXIA INDUCIBLE FACTOR-2 WITH JRNL TITL 2 SMALL MOLECULES. JRNL REF NAT.CHEM.BIOL. V. 9 271 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23434853 JRNL DOI 10.1038/NCHEMBIO.1185 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 37409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0271 - 3.5230 0.99 2807 148 0.1700 0.1992 REMARK 3 2 3.5230 - 2.7971 1.00 2763 159 0.1628 0.1773 REMARK 3 3 2.7971 - 2.4437 1.00 2733 153 0.1664 0.1938 REMARK 3 4 2.4437 - 2.2204 1.00 2799 125 0.1582 0.1814 REMARK 3 5 2.2204 - 2.0613 1.00 2765 142 0.1542 0.1783 REMARK 3 6 2.0613 - 1.9398 1.00 2772 146 0.1573 0.1633 REMARK 3 7 1.9398 - 1.8426 1.00 2719 156 0.1630 0.2091 REMARK 3 8 1.8426 - 1.7624 1.00 2774 153 0.1674 0.2064 REMARK 3 9 1.7624 - 1.6946 1.00 2732 167 0.1691 0.2200 REMARK 3 10 1.6946 - 1.6361 1.00 2733 141 0.1809 0.2260 REMARK 3 11 1.6361 - 1.5850 1.00 2762 134 0.2038 0.2412 REMARK 3 12 1.5850 - 1.5397 0.98 2703 144 0.2173 0.2709 REMARK 3 13 1.5397 - 1.5000 0.90 2467 112 0.2584 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.69470 REMARK 3 B22 (A**2) : -1.93070 REMARK 3 B33 (A**2) : -0.76400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2028 REMARK 3 ANGLE : 1.312 2758 REMARK 3 CHIRALITY : 0.078 285 REMARK 3 PLANARITY : 0.006 360 REMARK 3 DIHEDRAL : 15.859 757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:248) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5120 -52.8856 8.1499 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.2043 REMARK 3 T33: 0.1252 T12: -0.0054 REMARK 3 T13: 0.0156 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 3.0854 L22: 3.1206 REMARK 3 L33: 6.6379 L12: -3.0773 REMARK 3 L13: -4.2001 L23: 4.3957 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: 0.2250 S13: -0.0416 REMARK 3 S21: 0.1446 S22: 0.1309 S23: -0.1560 REMARK 3 S31: 0.5491 S32: 0.3707 S33: -0.0977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:272) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7688 -44.9729 16.1016 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1322 REMARK 3 T33: 0.2030 T12: -0.0225 REMARK 3 T13: -0.0516 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 6.5899 L22: 3.5537 REMARK 3 L33: 3.9677 L12: 0.4673 REMARK 3 L13: -2.8608 L23: 0.7713 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0937 S13: 0.0422 REMARK 3 S21: 0.3468 S22: -0.1221 S23: -0.4677 REMARK 3 S31: 0.0273 S32: 0.3001 S33: 0.1371 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:282) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0995 -35.8198 12.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.1346 REMARK 3 T33: 0.2001 T12: -0.0376 REMARK 3 T13: -0.0592 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.2654 L22: 5.9820 REMARK 3 L33: 9.1684 L12: 1.0190 REMARK 3 L13: -1.3758 L23: -6.5472 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: -0.0251 S13: 0.0701 REMARK 3 S21: 0.1968 S22: -0.1186 S23: -0.2596 REMARK 3 S31: -0.1950 S32: -0.0187 S33: 0.2369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 283:299) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8936 -35.6511 6.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.1905 REMARK 3 T33: 0.2548 T12: 0.0509 REMARK 3 T13: -0.0500 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 8.1092 L22: 6.9611 REMARK 3 L33: 6.2068 L12: 6.0554 REMARK 3 L13: -5.5805 L23: -3.7113 REMARK 3 S TENSOR REMARK 3 S11: 0.4319 S12: 0.3720 S13: 0.5754 REMARK 3 S21: 0.2090 S22: -0.0427 S23: 0.7840 REMARK 3 S31: -0.7567 S32: -0.5990 S33: -0.2915 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 300:326) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8936 -42.8050 5.8713 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.0820 REMARK 3 T33: 0.1391 T12: -0.0057 REMARK 3 T13: -0.0047 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.3452 L22: 2.9332 REMARK 3 L33: 4.5108 L12: -1.2992 REMARK 3 L13: -1.2260 L23: -0.4809 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: 0.2575 S13: -0.0180 REMARK 3 S21: -0.2032 S22: -0.1070 S23: -0.2632 REMARK 3 S31: -0.0973 S32: -0.0111 S33: 0.1438 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 327:348) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8644 -46.8821 9.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.0936 REMARK 3 T33: 0.1312 T12: -0.0170 REMARK 3 T13: 0.0069 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.4050 L22: 4.6715 REMARK 3 L33: 3.3518 L12: 0.0354 REMARK 3 L13: -0.6469 L23: -0.0394 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: 0.0998 S13: 0.0218 REMARK 3 S21: -0.1964 S22: -0.1372 S23: -0.0271 REMARK 3 S31: -0.1825 S32: 0.0193 S33: 0.0024 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 358:377) REMARK 3 ORIGIN FOR THE GROUP (A): 11.740 -58.520 20.533 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0922 REMARK 3 T33: 0.0588 T12: 0.0033 REMARK 3 T13: 0.0131 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.6167 L22: 8.3742 REMARK 3 L33: 6.7884 L12: 0.4051 REMARK 3 L13: -0.3125 L23: -3.9228 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0981 S13: 0.1427 REMARK 3 S21: 0.2134 S22: 0.1424 S23: 0.1597 REMARK 3 S31: -0.3253 S32: -0.2151 S33: -0.1215 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 378:390) REMARK 3 ORIGIN FOR THE GROUP (A): 16.997 -58.869 28.722 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.1793 REMARK 3 T33: 0.1253 T12: 0.0257 REMARK 3 T13: -0.0024 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.0676 L22: 4.1604 REMARK 3 L33: 5.8365 L12: 2.6572 REMARK 3 L13: 1.8856 L23: 2.7101 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.1210 S13: 0.1629 REMARK 3 S21: -0.0872 S22: -0.1938 S23: 0.2963 REMARK 3 S31: -0.0884 S32: -0.4961 S33: 0.0704 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 391:404) REMARK 3 ORIGIN FOR THE GROUP (A): 7.003 -68.160 25.742 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.0706 REMARK 3 T33: 0.0887 T12: -0.0269 REMARK 3 T13: -0.0163 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 8.9107 L22: 1.4821 REMARK 3 L33: 3.3029 L12: -0.1679 REMARK 3 L13: -1.2466 L23: 0.8186 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: 0.0259 S13: -0.0991 REMARK 3 S21: 0.0712 S22: -0.0398 S23: 0.0111 REMARK 3 S31: 0.4016 S32: -0.0618 S33: -0.0780 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 405:417) REMARK 3 ORIGIN FOR THE GROUP (A): -0.721 -66.272 16.540 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1068 REMARK 3 T33: 0.1232 T12: -0.0282 REMARK 3 T13: -0.0198 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.6708 L22: 3.4977 REMARK 3 L33: 4.9530 L12: 0.7300 REMARK 3 L13: 1.4799 L23: 3.3892 REMARK 3 S TENSOR REMARK 3 S11: 0.2471 S12: -0.3147 S13: -0.3269 REMARK 3 S21: 0.2778 S22: -0.0430 S23: 0.0582 REMARK 3 S31: 0.5153 S32: -0.2167 S33: -0.1273 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 418:422) REMARK 3 ORIGIN FOR THE GROUP (A): -1.635 -55.504 8.825 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.2583 REMARK 3 T33: 0.1559 T12: 0.0132 REMARK 3 T13: -0.0157 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 7.6045 L22: 8.4637 REMARK 3 L33: 3.4742 L12: -5.3962 REMARK 3 L13: 3.2855 L23: -5.4176 REMARK 3 S TENSOR REMARK 3 S11: -0.6841 S12: -0.9154 S13: 0.3865 REMARK 3 S21: 1.2368 S22: -0.3442 S23: -0.5812 REMARK 3 S31: -0.5110 S32: 0.0741 S33: 0.6510 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 423:446) REMARK 3 ORIGIN FOR THE GROUP (A): 4.588 -60.540 26.913 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0699 REMARK 3 T33: 0.0679 T12: 0.0160 REMARK 3 T13: 0.0103 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.3366 L22: 1.5487 REMARK 3 L33: 4.6413 L12: -0.4470 REMARK 3 L13: -1.1129 L23: 1.1094 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.0274 S13: -0.0161 REMARK 3 S21: 0.0213 S22: 0.0697 S23: 0.0042 REMARK 3 S31: -0.0542 S32: 0.0712 S33: -0.1169 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 447:455) REMARK 3 ORIGIN FOR THE GROUP (A): 11.249 -58.935 1.015 REMARK 3 T TENSOR REMARK 3 T11: 0.3372 T22: 0.1284 REMARK 3 T33: -0.0546 T12: 0.0660 REMARK 3 T13: 0.0698 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.6248 L22: 1.0635 REMARK 3 L33: 4.0133 L12: 0.0920 REMARK 3 L13: -0.1408 L23: 1.0788 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: 0.1923 S13: -0.0085 REMARK 3 S21: -0.9789 S22: -0.1203 S23: -0.2653 REMARK 3 S31: 0.1816 S32: 0.2271 S33: -0.0309 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 456:467) REMARK 3 ORIGIN FOR THE GROUP (A): 4.635 -55.650 23.847 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0582 REMARK 3 T33: 0.0615 T12: -0.0087 REMARK 3 T13: -0.0135 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.2987 L22: 2.6912 REMARK 3 L33: 8.5458 L12: -0.1815 REMARK 3 L13: -3.0696 L23: -1.4612 REMARK 3 S TENSOR REMARK 3 S11: 0.2214 S12: 0.0119 S13: 0.1731 REMARK 3 S21: 0.1104 S22: 0.0275 S23: 0.0244 REMARK 3 S31: -0.5105 S32: -0.0858 S33: -0.2812 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : CUSTOM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.2_869 REMARK 200 STARTING MODEL: PDB ENTRY 3F1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400 50 MM BISTRIS, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.67650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.67650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 ASN A 328 REMARK 465 PRO A 329 REMARK 465 ARG A 330 REMARK 465 ASN A 331 REMARK 465 LEU A 332 REMARK 465 GLN A 333 REMARK 465 LYS A 349 REMARK 465 ASN A 350 REMARK 465 GLY B 350 REMARK 465 GLU B 351 REMARK 465 PHE B 352 REMARK 465 LYS B 353 REMARK 465 GLY B 354 REMARK 465 LEU B 355 REMARK 465 ASN B 356 REMARK 465 VAL B 357 REMARK 465 SER B 468 REMARK 465 GLN B 469 REMARK 465 GLU B 470 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 263 CD OE1 OE2 REMARK 480 GLU A 270 OE2 REMARK 480 GLN A 335 CG CD OE1 NE2 REMARK 480 GLU A 346 OE1 OE2 REMARK 480 GLN B 359 CG CD OE1 NE2 REMARK 480 ILE B 369 CD1 REMARK 480 GLN B 389 CG CD NE2 REMARK 480 LYS B 394 CE NZ REMARK 480 ASN B 433 OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 338 OG1 THR B 460 2.02 REMARK 500 NE2 GLN A 322 O HOH A 571 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 377 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 377 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE BOUND INHIBITOR CORRESPONDS TO COMPOUND (2) IN THE PRIMARY REMARK 600 LITERATURE CITATION REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0X3 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AN ARTIFICIAL HIF2 REMARK 900 LIGAND IN COMPLEX WITH AN ENGINEERED HIGH AFFINITY HIF2ALPHA PAS-B : REMARK 900 ARNT PAS-B PROTEIN HETERODIMER REMARK 900 RELATED ID: 3H82 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AN ARTIFICIAL HIF2 REMARK 900 LIGAND IN COMPLEX WITH AN ENGINEERED HIGH AFFINITY HIF2ALPHA PAS-B : REMARK 900 ARNT PAS-B PROTEIN HETERODIMER REMARK 900 RELATED ID: 3F1N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AN ARTIFICIAL HIF2 REMARK 900 LIGAND IN COMPLEX WITH AN ENGINEERED HIGH AFFINITY HIF2ALPHA PAS-B : REMARK 900 ARNT PAS-B PROTEIN HETERODIMER REMARK 900 RELATED ID: 3F1O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AN ARTIFICIAL HIF2 REMARK 900 LIGAND IN COMPLEX WITH AN ENGINEERED HIGH AFFINITY HIF2ALPHA PAS-B : REMARK 900 ARNT PAS-B PROTEIN HETERODIMER REMARK 900 RELATED ID: 3F1P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENGINEERED HIGH AFFINITY HIF2ALPHA : PAS-B REMARK 900 ARNT PAS-B PROTEIN HETERODIMER REMARK 900 RELATED ID: 2HV1 RELATED DB: PDB REMARK 900 NMR-GUIDED MODEL OF THE HETERODIMER OF WILDTYPE HIF2ALPHA PAS-B AND REMARK 900 ARNT PAS-B DOMAINS DBREF 4GHI A 239 350 UNP Q99814 EPAS1_HUMAN 239 350 DBREF 4GHI B 356 470 UNP P27540 ARNT_HUMAN 356 470 SEQADV 4GHI GLY A -2 UNP Q99814 EXPRESSION TAG SEQADV 4GHI GLU A -1 UNP Q99814 EXPRESSION TAG SEQADV 4GHI PHE A 0 UNP Q99814 EXPRESSION TAG SEQADV 4GHI LYS A 1 UNP Q99814 EXPRESSION TAG SEQADV 4GHI GLY A 2 UNP Q99814 EXPRESSION TAG SEQADV 4GHI GLU A 247 UNP Q99814 ARG 247 ENGINEERED MUTATION SEQADV 4GHI GLY B 350 UNP P27540 EXPRESSION TAG SEQADV 4GHI GLU B 351 UNP P27540 EXPRESSION TAG SEQADV 4GHI PHE B 352 UNP P27540 EXPRESSION TAG SEQADV 4GHI LYS B 353 UNP P27540 EXPRESSION TAG SEQADV 4GHI GLY B 354 UNP P27540 EXPRESSION TAG SEQADV 4GHI LEU B 355 UNP P27540 EXPRESSION TAG SEQADV 4GHI ARG B 362 UNP P27540 GLU 362 ENGINEERED MUTATION SEQRES 1 A 117 GLY GLU PHE LYS GLY LEU ASP SER LYS THR PHE LEU SER SEQRES 2 A 117 GLU HIS SER MET ASP MET LYS PHE THR TYR CYS ASP ASP SEQRES 3 A 117 ARG ILE THR GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU SEQRES 4 A 117 LEU GLY ARG SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SEQRES 5 A 117 SER GLU ASN MET THR LYS SER HIS GLN ASN LEU CYS THR SEQRES 6 A 117 LYS GLY GLN VAL VAL SER GLY GLN TYR ARG MET LEU ALA SEQRES 7 A 117 LYS HIS GLY GLY TYR VAL TRP LEU GLU THR GLN GLY THR SEQRES 8 A 117 VAL ILE TYR ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE SEQRES 9 A 117 MET CYS VAL ASN TYR VAL LEU SER GLU ILE GLU LYS ASN SEQRES 1 B 121 GLY GLU PHE LYS GLY LEU ASN VAL CYS GLN PRO THR ARG SEQRES 2 B 121 PHE ILE SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE SEQRES 3 B 121 VAL ASP HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO SEQRES 4 B 121 GLN GLU LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS SEQRES 5 B 121 PRO GLU ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN SEQRES 6 B 121 VAL VAL LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE SEQRES 7 B 121 ARG PHE ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG SEQRES 8 B 121 THR SER SER PHE THR PHE GLN ASN PRO TYR SER ASP GLU SEQRES 9 B 121 ILE GLU TYR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SEQRES 10 B 121 SER SER GLN GLU HET 0X3 A 401 27 HETNAM 0X3 N-(3-CHLORO-5-FLUOROPHENYL)-4-NITRO-2,1,3- HETNAM 2 0X3 BENZOXADIAZOL-5-AMINE FORMUL 3 0X3 C12 H6 CL F N4 O3 FORMUL 4 HOH *184(H2 O) HELIX 1 1 LEU A 239 SER A 241 5 3 HELIX 2 2 ASP A 259 GLY A 266 1 8 HELIX 3 3 HIS A 268 LEU A 273 1 6 HELIX 4 4 SER A 276 PHE A 280 5 5 HELIX 5 6 ASP A 285 GLY A 300 1 16 HELIX 6 7 ARG B 379 GLY B 385 1 7 HELIX 7 8 GLN B 387 LEU B 392 1 6 HELIX 8 9 ASN B 395 CYS B 400 5 6 HELIX 9 10 ASP B 404 VAL B 416 1 13 SHEET 1 A 5 PHE A 254 CYS A 257 0 SHEET 2 A 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 A 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 A 5 TYR A 316 ILE A 326 -1 N THR A 324 O MET A 338 SHEET 5 A 5 GLN A 301 VAL A 303 -1 N VAL A 302 O GLY A 323 SHEET 1 B 5 PHE A 254 CYS A 257 0 SHEET 2 B 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 B 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 B 5 TYR A 316 ILE A 326 -1 N THR A 324 O MET A 338 SHEET 5 B 5 TYR A 307 LEU A 310 -1 N TYR A 307 O LEU A 319 SHEET 1 C 5 PHE B 373 VAL B 376 0 SHEET 2 C 5 ARG B 362 HIS B 367 -1 N ARG B 366 O THR B 374 SHEET 3 C 5 TYR B 456 ASN B 463 -1 O CYS B 459 N SER B 365 SHEET 4 C 5 TRP B 436 PHE B 446 -1 N PHE B 444 O ILE B 458 SHEET 5 C 5 LEU B 423 ARG B 430 -1 N PHE B 427 O MET B 439 SITE 1 AC1 15 PHE A 244 SER A 246 HIS A 248 MET A 252 SITE 2 AC1 15 ALA A 277 TYR A 281 MET A 289 SER A 292 SITE 3 AC1 15 HIS A 293 LEU A 296 SER A 304 TYR A 307 SITE 4 AC1 15 ILE A 337 CYS A 339 ASN A 341 CRYST1 73.353 83.000 41.020 90.00 105.98 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013633 0.000000 0.003904 0.00000 SCALE2 0.000000 0.012048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025358 0.00000