HEADER HYDROLASE 08-AUG-12 4GHN TITLE CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE (BACUNI_00178) FROM TITLE 2 BACTEROIDES UNIFORMIS ATCC 8492 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-421; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 3 ORGANISM_TAXID: 411479; SOURCE 4 ATCC: 8492; SOURCE 5 GENE: BACUNI_00178; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PROTEASE, PEPTIDASE_S41 OF PF03572 FAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 06-NOV-24 4GHN 1 REMARK REVDAT 4 01-FEB-23 4GHN 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4GHN 1 REMARK REVDAT 2 24-DEC-14 4GHN 1 TITLE REVDAT 1 20-MAR-13 4GHN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACUNI_00178) JRNL TITL 2 FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 91641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 554 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2269 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4581 ; 1.470 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5557 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 5.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;34.995 ;24.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;11.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3787 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2015 ; 2.587 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 802 ; 1.751 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3298 ; 3.572 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1337 ; 4.698 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1263 ; 6.575 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5621 ; 1.969 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 561 ; 7.823 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5528 ; 4.539 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. GLYCEROL (GOL) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION SOLUTION ARE MODELED. 4. THE SCATTERING FACTORS REMARK 3 FOR SULFUR AND SELENIUM ATOMS WERE ADJUSTED BY REFMAC 5.5.0110 REMARK 3 TO ACCOUNT FOR ANOMALOUS DISPERSION BASED ON THE WAVELENGTH REMARK 3 0.9795 A (S F'= 0.18, SE F'= -9.64). THE CROMER MANN C VALUES REMARK 3 LISTED IN THE CIF VERSION OF THE FILE INCLUDE THIS CORRECTION. REMARK 4 REMARK 4 4GHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 17.932 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : 0.52900 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.00% GLYCEROL, 5.60% POLYETHYLENE REMARK 280 GLYCOL 4000, 0.1M SODIUM ACETATE PH 4.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.42200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.84400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.84400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.42200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 30 REMARK 465 TYR A 31 REMARK 465 LYS A 420 REMARK 465 GLN A 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 ARG A 358 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1091 O HOH A 1092 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 330 CB GLU A 330 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 140 80.27 67.67 REMARK 500 ASP A 238 -21.25 63.34 REMARK 500 PRO A 251 37.98 -97.91 REMARK 500 SER A 327 -128.60 64.93 REMARK 500 SER A 327 -129.03 66.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417828 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 30-421 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4GHN A 30 421 UNP A7UY07 A7UY07_BACUN 30 421 SEQADV 4GHN GLY A 0 UNP A7UY07 EXPRESSION TAG SEQRES 1 A 393 GLY ASN TYR PHE TYR ASN ASP LYS GLN ILE ASP VAL GLU SEQRES 2 A 393 ASN PHE TYR ILE ALA GLU LEU PRO LEU THR PRO SER GLN SEQRES 3 A 393 PHE GLU GLU ASP PHE LYS GLU ILE HIS GLN ILE VAL MSE SEQRES 4 A 393 GLU ASN TYR SER LEU TYR GLN ALA LYS HIS LEU ASN MSE SEQRES 5 A 393 ASP SER LEU TYR GLN ALA CYS ASP ALA ARG VAL ARG GLN SEQRES 6 A 393 ALA GLN THR THR THR ASP TYR GLY LEU ILE VAL GLN GLU SEQRES 7 A 393 TYR ILE SER ALA LEU GLN CYS ALA HIS ALA ILE THR CYS SEQRES 8 A 393 TYR LYS ARG TYR THR ALA ASN GLN ARG VAL ALA PHE ILE SEQRES 9 A 393 GLU ASP PHE LEU PHE VAL ASP LYS PRO ASN ASP TYR LEU SEQRES 10 A 393 THR GLU TYR GLY PHE GLN ASP LYS ASP ARG ILE ILE ALA SEQRES 11 A 393 ILE ASN GLY LEU PRO TYR LYS GLN TRP ILE GLU GLN ASN SEQRES 12 A 393 GLU LYS TYR THR GLU ALA SER THR VAL PRO HIS ARG ARG SEQRES 13 A 393 LEU ARG THR ALA TYR ASP ALA PHE ARG SER TYR ALA ASP SEQRES 14 A 393 THR LEU ARG ASN TYR THR LEU LEU ARG GLY GLY ASP THR SEQRES 15 A 393 LEU THR VAL THR LEU PRO LEU LYS GLN ARG ASP TYR PHE SEQRES 16 A 393 PRO ASP ASN GLU GLU GLN THR VAL GLU SER ARG ILE LEU SEQRES 17 A 393 GLN ASP SER ILE GLY TYR LEU THR ILE LYS THR MSE MSE SEQRES 18 A 393 ASN PRO VAL MSE GLU ASP PHE LYS ALA VAL TYR PRO LYS SEQRES 19 A 393 VAL LYS ASP LEU PRO TYR LEU ILE ILE ASP VAL ARG ARG SEQRES 20 A 393 ASN GLY GLY GLY ASN SER MSE ASN GLY VAL ASN ILE CYS SEQRES 21 A 393 LYS TYR PHE ILE ARG GLU ALA GLN PRO HIS CYS VAL SER SEQRES 22 A 393 LYS SER TYR ILE MSE GLN PRO GLU ALA ASP ALA TYR LYS SEQRES 23 A 393 GLY LYS ILE TYR LEU LEU THR ASP THR TYR THR LEU SER SEQRES 24 A 393 ALA ALA GLU SER PHE THR LEU ASP MSE LYS GLU SER GLY SEQRES 25 A 393 ASN VAL THR LEU ILE GLY GLU ALA THR GLY GLY ASP THR SEQRES 26 A 393 GLY ASN GLY PRO ARG PRO PHE CYS THR LYS GLN ARG THR SEQRES 27 A 393 TYR PHE ARG ILE PRO THR ARG GLN PRO ASP VAL SER SER SEQRES 28 A 393 LYS GLY PHE PRO MSE GLU GLY ILE GLY ILE PRO PRO HIS SEQRES 29 A 393 HIS GLN VAL SER GLN THR VAL ALA ASP PHE MSE LYS ASP SEQRES 30 A 393 GLU ASP THR VAL LEU ASN TYR ALA VAL GLY LEU ILE THR SEQRES 31 A 393 GLU LYS GLN MODRES 4GHN MSE A 67 MET SELENOMETHIONINE MODRES 4GHN MSE A 80 MET SELENOMETHIONINE MODRES 4GHN MSE A 248 MET SELENOMETHIONINE MODRES 4GHN MSE A 249 MET SELENOMETHIONINE MODRES 4GHN MSE A 253 MET SELENOMETHIONINE MODRES 4GHN MSE A 282 MET SELENOMETHIONINE MODRES 4GHN MSE A 306 MET SELENOMETHIONINE MODRES 4GHN MSE A 336 MET SELENOMETHIONINE MODRES 4GHN MSE A 384 MET SELENOMETHIONINE MODRES 4GHN MSE A 403 MET SELENOMETHIONINE HET MSE A 67 8 HET MSE A 80 8 HET MSE A 248 8 HET MSE A 249 8 HET MSE A 253 8 HET MSE A 282 8 HET MSE A 306 8 HET MSE A 336 8 HET MSE A 384 8 HET MSE A 403 8 HET GOL A 500 6 HET GOL A 501 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *554(H2 O) HELIX 1 1 TYR A 44 LEU A 48 5 5 HELIX 2 2 THR A 51 SER A 53 5 3 HELIX 3 3 GLN A 54 TYR A 70 1 17 HELIX 4 4 ASN A 79 ARG A 92 1 14 HELIX 5 5 THR A 96 ALA A 110 1 15 HELIX 6 6 ASN A 142 TYR A 148 1 7 HELIX 7 7 TYR A 164 GLU A 172 1 9 HELIX 8 8 LYS A 173 THR A 175 5 3 HELIX 9 9 THR A 179 TYR A 189 1 11 HELIX 10 10 GLN A 219 PHE A 223 5 5 HELIX 11 11 PRO A 251 LYS A 264 1 14 HELIX 12 12 ASN A 280 LYS A 289 1 10 HELIX 13 13 SER A 327 SER A 339 1 13 HELIX 14 14 THR A 398 LYS A 404 1 7 HELIX 15 15 ASP A 407 GLU A 419 1 13 SHEET 1 A 3 ILE A 117 THR A 118 0 SHEET 2 A 3 TYR A 367 PRO A 371 -1 O ARG A 369 N ILE A 117 SHEET 3 A 3 PRO A 357 CYS A 361 -1 N PHE A 360 O PHE A 368 SHEET 1 B 2 TYR A 123 THR A 124 0 SHEET 2 B 2 ARG A 193 SER A 194 -1 O SER A 194 N TYR A 123 SHEET 1 C 2 VAL A 129 ILE A 132 0 SHEET 2 C 2 PHE A 135 VAL A 138 -1 O PHE A 137 N ALA A 130 SHEET 1 D 4 LEU A 162 PRO A 163 0 SHEET 2 D 4 ARG A 155 ILE A 159 -1 N ILE A 159 O LEU A 162 SHEET 3 D 4 LEU A 199 ARG A 206 -1 O THR A 203 N ILE A 157 SHEET 4 D 4 ASP A 209 PRO A 216 -1 O LEU A 211 N LEU A 204 SHEET 1 E 6 VAL A 231 LEU A 236 0 SHEET 2 E 6 ILE A 240 ILE A 245 -1 O ILE A 240 N LEU A 236 SHEET 3 E 6 TYR A 268 ASP A 272 1 O TYR A 268 N GLY A 241 SHEET 4 E 6 LYS A 316 THR A 321 1 O TYR A 318 N ILE A 271 SHEET 5 E 6 VAL A 342 GLY A 346 1 O ILE A 345 N LEU A 319 SHEET 6 E 6 HIS A 393 GLN A 394 1 O HIS A 393 N GLY A 346 SHEET 1 F 2 GLN A 296 PRO A 297 0 SHEET 2 F 2 ILE A 305 MSE A 306 -1 O MSE A 306 N GLN A 296 LINK C VAL A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N GLU A 68 1555 1555 1.33 LINK C ASN A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N ASP A 81 1555 1555 1.34 LINK C THR A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N MSE A 249 1555 1555 1.34 LINK C MSE A 249 N ASN A 250 1555 1555 1.32 LINK C VAL A 252 N MSE A 253 1555 1555 1.33 LINK C MSE A 253 N GLU A 254 1555 1555 1.32 LINK C ASER A 281 N MSE A 282 1555 1555 1.34 LINK C BSER A 281 N MSE A 282 1555 1555 1.34 LINK C MSE A 282 N ASN A 283 1555 1555 1.34 LINK C ILE A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N GLN A 307 1555 1555 1.33 LINK C ASP A 335 N MSE A 336 1555 1555 1.33 LINK C MSE A 336 N LYS A 337 1555 1555 1.33 LINK C PRO A 383 N MSE A 384 1555 1555 1.34 LINK C MSE A 384 N GLU A 385 1555 1555 1.34 LINK C PHE A 402 N MSE A 403 1555 1555 1.32 LINK C MSE A 403 N LYS A 404 1555 1555 1.33 CISPEP 1 ASN A 250 PRO A 251 0 11.09 SITE 1 AC1 5 ALA A 75 LYS A 76 HIS A 77 HOH A 686 SITE 2 AC1 5 HOH A1150 SITE 1 AC2 6 LEU A 83 ALA A 86 ARG A 90 HOH A 826 SITE 2 AC2 6 HOH A 978 HOH A 993 CRYST1 102.077 102.077 97.266 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009796 0.005656 0.000000 0.00000 SCALE2 0.000000 0.011312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010281 0.00000 CONECT 315 320 CONECT 320 315 321 CONECT 321 320 322 324 CONECT 322 321 323 328 CONECT 323 322 CONECT 324 321 325 CONECT 325 324 326 CONECT 326 325 327 CONECT 327 326 CONECT 328 322 CONECT 432 438 CONECT 438 432 439 CONECT 439 438 440 442 CONECT 440 439 441 446 CONECT 441 440 CONECT 442 439 443 CONECT 443 442 444 CONECT 444 443 445 CONECT 445 444 CONECT 446 440 CONECT 1868 1873 CONECT 1873 1868 1874 CONECT 1874 1873 1875 1877 CONECT 1875 1874 1876 1881 CONECT 1876 1875 CONECT 1877 1874 1878 CONECT 1878 1877 1879 CONECT 1879 1878 1880 CONECT 1880 1879 CONECT 1881 1875 1882 CONECT 1882 1881 1883 1885 CONECT 1883 1882 1884 1889 CONECT 1884 1883 CONECT 1885 1882 1886 CONECT 1886 1885 1887 CONECT 1887 1886 1888 CONECT 1888 1887 CONECT 1889 1883 CONECT 1906 1911 CONECT 1911 1906 1912 CONECT 1912 1911 1913 1915 CONECT 1913 1912 1914 1919 CONECT 1914 1913 CONECT 1915 1912 1916 CONECT 1916 1915 1917 CONECT 1917 1916 1918 CONECT 1918 1917 CONECT 1919 1913 CONECT 2145 2153 CONECT 2146 2153 CONECT 2153 2145 2146 2154 CONECT 2154 2153 2155 2157 CONECT 2155 2154 2156 2161 CONECT 2156 2155 CONECT 2157 2154 2158 CONECT 2158 2157 2159 CONECT 2159 2158 2160 CONECT 2160 2159 CONECT 2161 2155 CONECT 2341 2347 CONECT 2347 2341 2348 CONECT 2348 2347 2349 2351 CONECT 2349 2348 2350 2355 CONECT 2350 2349 CONECT 2351 2348 2352 CONECT 2352 2351 2353 CONECT 2353 2352 2354 CONECT 2354 2353 CONECT 2355 2349 CONECT 2584 2590 CONECT 2590 2584 2591 CONECT 2591 2590 2592 2594 CONECT 2592 2591 2593 2598 CONECT 2593 2592 CONECT 2594 2591 2595 CONECT 2595 2594 2596 CONECT 2596 2595 2597 CONECT 2597 2596 CONECT 2598 2592 CONECT 2950 2955 CONECT 2955 2950 2956 CONECT 2956 2955 2957 2959 CONECT 2957 2956 2958 2963 CONECT 2958 2957 CONECT 2959 2956 2960 CONECT 2960 2959 2961 CONECT 2961 2960 2962 CONECT 2962 2961 CONECT 2963 2957 CONECT 3096 3105 CONECT 3105 3096 3106 CONECT 3106 3105 3107 3109 CONECT 3107 3106 3108 3113 CONECT 3108 3107 CONECT 3109 3106 3110 CONECT 3110 3109 3111 CONECT 3111 3110 3112 CONECT 3112 3111 CONECT 3113 3107 CONECT 3249 3250 3251 CONECT 3250 3249 CONECT 3251 3249 3252 3253 CONECT 3252 3251 CONECT 3253 3251 3254 CONECT 3254 3253 CONECT 3255 3256 3257 CONECT 3256 3255 CONECT 3257 3255 3258 3259 CONECT 3258 3257 CONECT 3259 3257 3260 CONECT 3260 3259 MASTER 371 0 12 15 19 0 4 6 3684 1 111 31 END