HEADER ISOMERASE 08-AUG-12 4GIN TITLE CRYSTAL STRUCTURE OF THE MUTB R284C MUTANT FROM CRYSTALS SOAKED WITH TITLE 2 THE INHIBITOR DEOXYNOJIRIMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TREHALULOSE SYNTHASE; COMPND 5 EC: 5.4.11.99; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM; SOURCE 3 ORGANISM_TAXID: 1071045; SOURCE 4 STRAIN: MX-45; SOURCE 5 GENE: MUTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHWG659.3 KEYWDS MUTANT ENZYME, TIM-BARREL(BETA/ALPHA)8, SUCROSE ISOMERASE, GLYCOSIDE KEYWDS 2 HYDROLASE, TREHALULOSE SYNTHASE, GH13 FAMILY(CAZY DATABASE), CALCIUM KEYWDS 3 BINDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LIPSKI,S.RAVAUD,X.ROBERT,R.HASER,N.AGHAJARI REVDAT 3 08-NOV-23 4GIN 1 REMARK SEQADV LINK REVDAT 2 03-JUL-13 4GIN 1 JRNL REVDAT 1 13-FEB-13 4GIN 0 JRNL AUTH A.LIPSKI,H.WATZLAWICK,S.RAVAUD,X.ROBERT,M.RHIMI,R.HASER, JRNL AUTH 2 R.MATTES,N.AGHAJARI JRNL TITL MUTATIONS INDUCING AN ACTIVE-SITE APERTURE IN RHIZOBIUM SP. JRNL TITL 2 SUCROSE ISOMERASE CONFER HYDROLYTIC ACTIVITY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 298 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23385465 JRNL DOI 10.1107/S0907444912045532 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.140 REMARK 3 FREE R VALUE TEST SET COUNT : 5580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8625 - 5.8994 0.99 1781 197 0.1680 0.1791 REMARK 3 2 5.8994 - 4.6842 1.00 1704 204 0.1314 0.1616 REMARK 3 3 4.6842 - 4.0925 1.00 1690 191 0.1155 0.1519 REMARK 3 4 4.0925 - 3.7185 1.00 1708 159 0.1219 0.1595 REMARK 3 5 3.7185 - 3.4521 1.00 1649 196 0.1315 0.1486 REMARK 3 6 3.4521 - 3.2486 1.00 1668 172 0.1389 0.1842 REMARK 3 7 3.2486 - 3.0860 1.00 1657 205 0.1436 0.1960 REMARK 3 8 3.0860 - 2.9517 1.00 1665 181 0.1460 0.1889 REMARK 3 9 2.9517 - 2.8381 1.00 1628 196 0.1442 0.1945 REMARK 3 10 2.8381 - 2.7402 1.00 1650 200 0.1419 0.1792 REMARK 3 11 2.7402 - 2.6545 1.00 1655 177 0.1365 0.1737 REMARK 3 12 2.6545 - 2.5786 1.00 1651 176 0.1353 0.1684 REMARK 3 13 2.5786 - 2.5107 1.00 1622 178 0.1374 0.1764 REMARK 3 14 2.5107 - 2.4495 1.00 1645 191 0.1294 0.1978 REMARK 3 15 2.4495 - 2.3938 1.00 1619 196 0.1384 0.1937 REMARK 3 16 2.3938 - 2.3429 1.00 1636 187 0.1329 0.1700 REMARK 3 17 2.3429 - 2.2960 1.00 1612 201 0.1338 0.1681 REMARK 3 18 2.2960 - 2.2527 1.00 1670 170 0.1408 0.2054 REMARK 3 19 2.2527 - 2.2124 1.00 1613 194 0.1451 0.2035 REMARK 3 20 2.2124 - 2.1749 1.00 1630 183 0.1437 0.1831 REMARK 3 21 2.1749 - 2.1399 1.00 1648 165 0.1400 0.1915 REMARK 3 22 2.1399 - 2.1069 1.00 1622 201 0.1368 0.1887 REMARK 3 23 2.1069 - 2.0760 1.00 1638 154 0.1485 0.1925 REMARK 3 24 2.0760 - 2.0467 1.00 1615 196 0.1501 0.1930 REMARK 3 25 2.0467 - 2.0191 1.00 1662 179 0.1508 0.1978 REMARK 3 26 2.0191 - 1.9928 1.00 1615 179 0.1495 0.2095 REMARK 3 27 1.9928 - 1.9679 1.00 1629 191 0.1499 0.1951 REMARK 3 28 1.9679 - 1.9442 1.00 1599 192 0.1550 0.1974 REMARK 3 29 1.9442 - 1.9216 1.00 1618 201 0.1657 0.2030 REMARK 3 30 1.9216 - 1.9000 1.00 1638 168 0.1894 0.2414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4666 REMARK 3 ANGLE : 1.095 6351 REMARK 3 CHIRALITY : 0.085 645 REMARK 3 PLANARITY : 0.005 840 REMARK 3 DIHEDRAL : 12.743 1687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.4763 12.5386 14.8503 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0764 REMARK 3 T33: 0.0762 T12: 0.0085 REMARK 3 T13: 0.0051 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4872 L22: 0.6844 REMARK 3 L33: 0.4728 L12: 0.0723 REMARK 3 L13: 0.0739 L23: -0.0711 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.0211 S13: -0.0050 REMARK 3 S21: -0.0159 S22: 0.0022 S23: -0.0731 REMARK 3 S31: 0.0068 S32: 0.0178 S33: -0.0186 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9699 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11300 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ZJA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 12%(W/V) PEG20000, REMARK 280 0.01M L-CYSTEINE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 LEU A -25 REMARK 465 MET A -24 REMARK 465 LYS A -23 REMARK 465 ARG A -22 REMARK 465 LEU A -21 REMARK 465 PHE A -20 REMARK 465 ALA A -19 REMARK 465 ALA A -18 REMARK 465 SER A -17 REMARK 465 LEU A -16 REMARK 465 MET A -15 REMARK 465 LEU A -14 REMARK 465 ALA A -13 REMARK 465 PHE A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 VAL A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 VAL A -6 REMARK 465 ARG A -5 REMARK 465 ALA A -4 REMARK 465 GLU A -3 REMARK 465 GLU A -2 REMARK 465 ALA A -1 REMARK 465 VAL A 0 REMARK 465 LYS A 1 REMARK 465 PRO A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ASP A 134 CB CG OD1 OD2 REMARK 470 HIS A 136 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 152 CB CG CD CE NZ REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 403 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 922 O HOH A 1261 2.09 REMARK 500 O HOH A 821 O HOH A 1217 2.10 REMARK 500 O HOH A 1210 O HOH A 1394 2.11 REMARK 500 SG CYS A 284 O HOH A 1210 2.15 REMARK 500 O HOH A 1209 O HOH A 1394 2.15 REMARK 500 O HOH A 932 O HOH A 933 2.18 REMARK 500 O HOH A 844 O HOH A 1387 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 77.18 -114.44 REMARK 500 HIS A 136 -168.20 -124.30 REMARK 500 PHE A 164 -131.23 -98.38 REMARK 500 THR A 201 51.28 38.73 REMARK 500 GLU A 273 -98.00 -113.03 REMARK 500 ASP A 384 107.94 -33.28 REMARK 500 SER A 477 -63.06 -106.66 REMARK 500 ALA A 511 43.32 -84.60 REMARK 500 TRP A 549 18.70 57.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD1 REMARK 620 2 ASN A 24 OD1 77.1 REMARK 620 3 ASP A 26 OD1 81.3 76.7 REMARK 620 4 ILE A 28 O 78.0 150.4 84.1 REMARK 620 5 ASP A 30 OD2 80.9 103.0 161.8 88.4 REMARK 620 6 HOH A 859 O 139.3 77.4 122.3 132.2 74.7 REMARK 620 7 HOH A 860 O 155.0 119.8 84.9 79.9 110.1 65.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZJA RELATED DB: PDB REMARK 900 TREHALULOSE SYNTHASE, MUTB, IN COMPLEX WITH TRIS (P1 FORM) REMARK 900 RELATED ID: 2PWH RELATED DB: PDB REMARK 900 MUTB IN THE NATIVE STATE REMARK 900 RELATED ID: 2PWE RELATED DB: PDB REMARK 900 AN INACTIVE MUTANT OF MUTB IN COMPLEX WITH SUCROSE REMARK 900 RELATED ID: 2PWF RELATED DB: PDB REMARK 900 AN INACTIVE MUTANT OF MUTB IN COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2PWD RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH DEOXYNOJIRIMYCIN REMARK 900 RELATED ID: 2PWG RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH CASTANOSPERMINE REMARK 900 RELATED ID: 4GI6 RELATED DB: PDB REMARK 900 MUTB MUTANT F164L FROM CRYSTALS SOAKED WITH GLUCOSE REMARK 900 RELATED ID: 4GI8 RELATED DB: PDB REMARK 900 MUTB MUTANT F164L FROM CRYSTALS SOAKED WITH SUCROSE REMARK 900 RELATED ID: 4GI9 RELATED DB: PDB REMARK 900 MUTB MUTANT F164L FROM CRYSTALS SOAKED WITH TREHALULOSE REMARK 900 RELATED ID: 4GIA RELATED DB: PDB REMARK 900 MUTB MUTANT F164L FROM CRYSTALS SOAKED WITH ISOMALTULOSE REMARK 900 RELATED ID: 1ZJB RELATED DB: PDB REMARK 900 TREHALULOSE SYNTHASE, MUTB, IN COMPLEX WITH TRIS (P21 FORM) REMARK 900 RELATED ID: 4H2C RELATED DB: PDB DBREF 4GIN A -26 557 UNP Q2PS28 Q2PS28_9PSED 1 584 SEQADV 4GIN CYS A 284 UNP Q2PS28 ARG 311 ENGINEERED MUTATION SEQRES 1 A 584 MET LEU MET LYS ARG LEU PHE ALA ALA SER LEU MET LEU SEQRES 2 A 584 ALA PHE SER SER VAL SER SER VAL ARG ALA GLU GLU ALA SEQRES 3 A 584 VAL LYS PRO GLY ALA PRO TRP TRP LYS SER ALA VAL PHE SEQRES 4 A 584 TYR GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY SEQRES 5 A 584 ASP GLY ILE GLY ASP PHE LYS GLY LEU THR GLU LYS LEU SEQRES 6 A 584 ASP TYR LEU LYS GLY LEU GLY ILE ASP ALA ILE TRP ILE SEQRES 7 A 584 ASN PRO HIS TYR ALA SER PRO ASN THR ASP ASN GLY TYR SEQRES 8 A 584 ASP ILE SER ASP TYR ARG GLU VAL MET LYS GLU TYR GLY SEQRES 9 A 584 THR MET GLU ASP PHE ASP ARG LEU MET ALA GLU LEU LYS SEQRES 10 A 584 LYS ARG GLY MET ARG LEU MET VAL ASP VAL VAL ILE ASN SEQRES 11 A 584 HIS SER SER ASP GLN HIS GLU TRP PHE LYS SER SER ARG SEQRES 12 A 584 ALA SER LYS ASP ASN PRO TYR ARG ASP TYR TYR PHE TRP SEQRES 13 A 584 ARG ASP GLY LYS ASP GLY HIS GLU PRO ASN ASN TYR PRO SEQRES 14 A 584 SER PHE PHE GLY GLY SER ALA TRP GLU LYS ASP PRO VAL SEQRES 15 A 584 THR GLY GLN TYR TYR LEU HIS TYR PHE GLY ARG GLN GLN SEQRES 16 A 584 PRO ASP LEU ASN TRP ASP THR PRO LYS LEU ARG GLU GLU SEQRES 17 A 584 LEU TYR ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SEQRES 18 A 584 SER GLY MET ARG PHE ASP THR VAL ALA THR TYR SER LYS SEQRES 19 A 584 THR PRO GLY PHE PRO ASP LEU THR PRO GLU GLN MET LYS SEQRES 20 A 584 ASN PHE ALA GLU ALA TYR THR GLN GLY PRO ASN LEU HIS SEQRES 21 A 584 ARG TYR LEU GLN GLU MET HIS GLU LYS VAL PHE ASP HIS SEQRES 22 A 584 TYR ASP ALA VAL THR ALA GLY GLU ILE PHE GLY ALA PRO SEQRES 23 A 584 LEU ASN GLN VAL PRO LEU PHE ILE ASP SER ARG ARG LYS SEQRES 24 A 584 GLU LEU ASP MET ALA PHE THR PHE ASP LEU ILE CYS TYR SEQRES 25 A 584 ASP ARG ALA LEU ASP ARG TRP HIS THR ILE PRO ARG THR SEQRES 26 A 584 LEU ALA ASP PHE ARG GLN THR ILE ASP LYS VAL ASP ALA SEQRES 27 A 584 ILE ALA GLY GLU TYR GLY TRP ASN THR PHE PHE LEU GLY SEQRES 28 A 584 ASN HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP SEQRES 29 A 584 ASP ARG PRO GLN TRP ARG GLU ALA SER ALA LYS ALA LEU SEQRES 30 A 584 ALA THR VAL THR LEU THR GLN ARG GLY THR PRO PHE ILE SEQRES 31 A 584 PHE GLN GLY ASP GLU LEU GLY MET THR ASN TYR PRO PHE SEQRES 32 A 584 LYS THR LEU GLN ASP PHE ASP ASP ILE GLU VAL LYS GLY SEQRES 33 A 584 PHE PHE GLN ASP TYR VAL GLU THR GLY LYS ALA THR ALA SEQRES 34 A 584 GLU GLU LEU LEU THR ASN VAL ALA LEU THR SER ARG ASP SEQRES 35 A 584 ASN ALA ARG THR PRO PHE GLN TRP ASP ASP SER ALA ASN SEQRES 36 A 584 ALA GLY PHE THR THR GLY LYS PRO TRP LEU LYS VAL ASN SEQRES 37 A 584 PRO ASN TYR THR GLU ILE ASN ALA ALA ARG GLU ILE GLY SEQRES 38 A 584 ASP PRO LYS SER VAL TYR SER PHE TYR ARG ASN LEU ILE SEQRES 39 A 584 SER ILE ARG HIS GLU THR PRO ALA LEU SER THR GLY SER SEQRES 40 A 584 TYR ARG ASP ILE ASP PRO SER ASN ALA ASP VAL TYR ALA SEQRES 41 A 584 TYR THR ARG SER GLN ASP GLY GLU THR TYR LEU VAL VAL SEQRES 42 A 584 VAL ASN PHE LYS ALA GLU PRO ARG SER PHE THR LEU PRO SEQRES 43 A 584 ASP GLY MET HIS ILE ALA GLU THR LEU ILE GLU SER SER SEQRES 44 A 584 SER PRO ALA ALA PRO ALA ALA GLY ALA ALA SER LEU GLU SEQRES 45 A 584 LEU GLN PRO TRP GLN SER GLY ILE TYR LYS VAL LYS HET CA A 601 1 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *716(H2 O) HELIX 1 1 PRO A 5 ALA A 10 1 6 HELIX 2 2 TYR A 16 PHE A 20 5 5 HELIX 3 3 ASP A 30 LYS A 37 1 8 HELIX 4 4 LYS A 37 GLY A 45 1 9 HELIX 5 5 LYS A 74 GLY A 77 5 4 HELIX 6 6 THR A 78 ARG A 92 1 15 HELIX 7 7 HIS A 109 ALA A 117 1 9 HELIX 8 8 TYR A 123 TYR A 127 5 5 HELIX 9 9 THR A 175 ASP A 191 1 17 HELIX 10 10 THR A 201 TYR A 205 5 5 HELIX 11 11 THR A 215 LYS A 220 1 6 HELIX 12 12 ASN A 221 THR A 227 1 7 HELIX 13 13 ASN A 231 VAL A 243 1 13 HELIX 14 14 PHE A 244 TYR A 247 5 4 HELIX 15 15 PRO A 259 ASN A 261 5 3 HELIX 16 16 GLN A 262 ASP A 268 1 7 HELIX 17 17 SER A 269 LYS A 272 5 4 HELIX 18 18 THR A 298 GLY A 314 1 17 HELIX 19 19 ARG A 330 GLY A 336 1 7 HELIX 20 20 TRP A 342 GLN A 357 1 16 HELIX 21 21 GLY A 366 GLY A 370 5 5 HELIX 22 22 THR A 378 PHE A 382 5 5 HELIX 23 23 ASP A 384 VAL A 395 1 12 HELIX 24 24 THR A 401 SER A 413 1 13 HELIX 25 25 ARG A 414 THR A 419 1 6 HELIX 26 26 SER A 426 PHE A 431 5 6 HELIX 27 27 ASN A 441 GLU A 446 5 6 HELIX 28 28 ASN A 448 GLY A 454 1 7 HELIX 29 29 SER A 458 THR A 473 1 16 HELIX 30 30 PRO A 474 GLY A 479 1 6 SHEET 1 A 8 MET A 276 PHE A 278 0 SHEET 2 A 8 VAL A 250 GLU A 254 1 N GLY A 253 O PHE A 278 SHEET 3 A 8 GLY A 196 PHE A 199 1 N PHE A 199 O ALA A 252 SHEET 4 A 8 ARG A 95 VAL A 100 1 N VAL A 100 O ARG A 198 SHEET 5 A 8 ALA A 48 ILE A 51 1 N ILE A 49 O MET A 97 SHEET 6 A 8 PHE A 12 VAL A 15 1 N VAL A 15 O TRP A 50 SHEET 7 A 8 THR A 360 PHE A 364 1 O ILE A 363 N GLN A 14 SHEET 8 A 8 THR A 320 PHE A 321 1 N PHE A 321 O PHE A 362 SHEET 1 B 2 TYR A 55 ALA A 56 0 SHEET 2 B 2 ASP A 68 VAL A 72 -1 O GLU A 71 N ALA A 56 SHEET 1 C 3 TRP A 129 ARG A 130 0 SHEET 2 C 3 TYR A 159 LEU A 161 -1 O TYR A 159 N ARG A 130 SHEET 3 C 3 TRP A 150 LYS A 152 -1 N GLU A 151 O TYR A 160 SHEET 1 D 5 SER A 480 ASP A 483 0 SHEET 2 D 5 VAL A 491 GLN A 498 -1 O SER A 497 N SER A 480 SHEET 3 D 5 GLU A 501 ASN A 508 -1 O TYR A 503 N ARG A 496 SHEET 4 D 5 SER A 551 VAL A 556 -1 O TYR A 554 N LEU A 504 SHEET 5 D 5 ILE A 524 SER A 531 -1 N ALA A 525 O LYS A 555 SHEET 1 E 2 ARG A 514 THR A 517 0 SHEET 2 E 2 SER A 543 LEU A 546 -1 O LEU A 544 N PHE A 516 LINK OD1 ASP A 22 CA CA A 601 1555 1555 2.36 LINK OD1 ASN A 24 CA CA A 601 1555 1555 2.33 LINK OD1 ASP A 26 CA CA A 601 1555 1555 2.36 LINK O ILE A 28 CA CA A 601 1555 1555 2.38 LINK OD2 ASP A 30 CA CA A 601 1555 1555 2.45 LINK CA CA A 601 O HOH A 859 1555 1555 2.54 LINK CA CA A 601 O HOH A 860 1555 1555 2.28 SITE 1 AC1 7 ASP A 22 ASN A 24 ASP A 26 ILE A 28 SITE 2 AC1 7 ASP A 30 HOH A 859 HOH A 860 SITE 1 AC2 7 ASP A 61 TYR A 64 HIS A 326 ASP A 327 SITE 2 AC2 7 ARG A 414 HOH A1162 HOH A1325 SITE 1 AC3 7 THR A 208 PRO A 212 GLN A 218 ALA A 225 SITE 2 AC3 7 GLN A 228 HOH A1033 HOH A1036 SITE 1 AC4 6 PHE A 256 ALA A 258 LEU A 260 ASP A 281 SITE 2 AC4 6 HOH A 740 HOH A1107 SITE 1 AC5 5 GLU A 36 LYS A 37 TYR A 316 HOH A1149 SITE 2 AC5 5 HOH A1154 CRYST1 83.800 89.700 91.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010917 0.00000