HEADER IMMUNE SYSTEM 13-AUG-12 4GKZ TITLE HA1.7, A MHC CLASS II RESTRICTED TCR SPECIFIC FOR HAEMAGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA CHAIN OF CLASS II TCR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA CHAIN OF CLASS II TCR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGMT7 KEYWDS MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II (PMHC-II), T-CELL, T-CELL KEYWDS 2 RECEPTOR (TCR), INFLUENZA, HA1.7, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.J.HOLLAND,P.J.RIZKALLAH,D.K.COLE,A.K.SEWELL,A.J.GODKIN REVDAT 2 13-SEP-23 4GKZ 1 REMARK REVDAT 1 07-NOV-12 4GKZ 0 JRNL AUTH C.J.HOLLAND,P.J.RIZKALLAH,S.VOLLERS,J.M.CALVO-CALLE, JRNL AUTH 2 F.MADURA,A.FULLER,A.K.SEWELL,L.J.STERN,A.GODKIN,D.K.COLE JRNL TITL MINIMAL CONFORMATIONAL PLASTICITY ENABLES TCR JRNL TITL 2 CROSS-REACTIVITY TO DIFFERENT MHC CLASS II HETERODIMERS. JRNL REF SCI REP V. 2 629 2012 JRNL REFN ESSN 2045-2322 JRNL PMID 22953050 JRNL DOI 10.1038/SREP00629 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.5100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 2.67000 REMARK 3 B33 (A**2) : -3.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.533 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3627 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2454 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4927 ; 1.745 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5977 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 8.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.576 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;19.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4055 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2227 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 890 ; 0.141 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1400 ; 1.811 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 2.777 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8352 5.4182 35.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0046 REMARK 3 T33: 0.1712 T12: -0.0065 REMARK 3 T13: -0.0054 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.1340 L22: 1.8616 REMARK 3 L33: 3.6922 L12: -0.2298 REMARK 3 L13: -0.1787 L23: 0.5930 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: -0.0055 S13: -0.0123 REMARK 3 S21: 0.0734 S22: -0.0476 S23: 0.0548 REMARK 3 S31: -0.1470 S32: -0.0631 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4233 3.0900 6.4938 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2267 REMARK 3 T33: 0.1647 T12: -0.0196 REMARK 3 T13: 0.0094 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.9577 L22: 1.5877 REMARK 3 L33: 1.0583 L12: -0.4737 REMARK 3 L13: -0.1043 L23: 0.0611 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0672 S13: -0.1488 REMARK 3 S21: -0.0912 S22: 0.0068 S23: -0.1499 REMARK 3 S31: 0.1000 S32: 0.0696 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2373 9.3680 47.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1954 REMARK 3 T33: 0.1238 T12: -0.0295 REMARK 3 T13: -0.0391 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.0475 L22: 1.2245 REMARK 3 L33: 0.8802 L12: -0.6523 REMARK 3 L13: -0.7930 L23: 0.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.0473 S13: 0.0431 REMARK 3 S21: 0.0849 S22: 0.0804 S23: -0.1444 REMARK 3 S31: -0.0881 S32: 0.3133 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9716 13.3310 17.2257 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.2735 REMARK 3 T33: 0.1689 T12: -0.0479 REMARK 3 T13: 0.0177 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.9834 L22: 0.3487 REMARK 3 L33: 1.1372 L12: -0.0211 REMARK 3 L13: 0.7352 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.0732 S13: 0.0469 REMARK 3 S21: -0.0956 S22: -0.0109 S23: -0.1220 REMARK 3 S31: -0.0384 S32: 0.0612 S33: 0.0466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 26.364 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : 0.57600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PROPANE, 200MM SODIUM REMARK 280 BROMIDE, 20% PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.83000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 155 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL B 2 O HOH B 416 1.93 REMARK 500 O LYS A 172 O1 EDO A 303 1.99 REMARK 500 O PHE A 97 O1 EDO A 302 2.03 REMARK 500 O TYR A 24 CG2 THR A 71 2.13 REMARK 500 OD1 ASP B 172 NH2 ARG B 192 2.17 REMARK 500 OE2 GLU B 237 O HOH B 417 2.17 REMARK 500 OG SER A 25 O2 SO4 A 305 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 51 43.82 -74.05 REMARK 500 ALA A 53 157.40 161.66 REMARK 500 PHE A 73 64.66 -160.83 REMARK 500 ALA A 86 170.38 178.93 REMARK 500 SER A 129 16.50 -69.69 REMARK 500 SER A 131 85.59 35.76 REMARK 500 SER A 135 95.94 162.97 REMARK 500 ASP A 170 65.88 13.87 REMARK 500 ALA A 190 -53.96 -128.96 REMARK 500 ASN A 192 -33.65 -158.90 REMARK 500 LYS B 53 -9.23 64.92 REMARK 500 SER B 80 103.51 -165.69 REMARK 500 ASP B 115 104.38 -174.54 REMARK 500 ASP B 152 68.92 -57.35 REMARK 500 PRO B 180 -4.46 -59.08 REMARK 500 ASP B 184 44.74 -99.45 REMARK 500 GLN B 201 58.02 -108.11 REMARK 500 ASN B 202 90.31 -160.94 REMARK 500 PRO B 203 7.87 -66.75 REMARK 500 PRO B 229 76.74 -64.62 REMARK 500 THR B 231 131.19 -39.47 REMARK 500 ALA B 238 147.85 -171.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 DBREF 4GKZ A 0 201 PDB 4GKZ 4GKZ 0 201 DBREF 4GKZ B 2 242 PDB 4GKZ 4GKZ 2 242 SEQRES 1 A 202 MET GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 202 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 202 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 202 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 202 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 202 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 202 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 202 ALA VAL SER GLU SER PRO PHE GLY ASN GLU LYS LEU THR SEQRES 9 A 202 PHE GLY THR GLY THR ARG LEU THR ILE ILE PRO ASN ILE SEQRES 10 A 202 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 202 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 202 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 202 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 202 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 202 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 202 ILE ILE PRO GLU ASP THR PHE SEQRES 1 B 241 VAL LYS VAL THR GLN SER SER ARG TYR LEU VAL LYS ARG SEQRES 2 B 241 THR GLY GLU LYS VAL PHE LEU GLU CYS VAL GLN ASP MET SEQRES 3 B 241 ASP HIS GLU ASN MET PHE TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 241 LEU GLY LEU ARG LEU ILE TYR PHE SER TYR ASP VAL LYS SEQRES 5 B 241 MET LYS GLU LYS GLY ASP ILE PRO GLU GLY TYR SER VAL SEQRES 6 B 241 SER ARG GLU LYS LYS GLU ARG PHE SER LEU ILE LEU GLU SEQRES 7 B 241 SER ALA SER THR ASN GLN THR SER MET TYR LEU CYS ALA SEQRES 8 B 241 SER SER SER THR GLY LEU PRO TYR GLY TYR THR PHE GLY SEQRES 9 B 241 SER GLY THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS SEQRES 10 B 241 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 B 241 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 B 241 LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 B 241 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 B 241 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 B 241 ASP SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER SEQRES 16 B 241 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 B 241 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 B 241 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 B 241 ALA GLU ALA TRP GLY ARG ALA HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET SO4 A 305 5 HET SO4 A 306 5 HET TAM A 307 11 HET EDO B 301 4 HET EDO B 302 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 TAM C7 H17 N O3 FORMUL 12 HOH *49(H2 O) HELIX 1 1 ILE A 59 GLY A 61 5 3 HELIX 2 2 HIS A 81 ALA A 85 5 5 HELIX 3 3 ARG A 167 ASP A 170 5 4 HELIX 4 4 ALA A 186 ALA A 190 5 5 HELIX 5 5 SER B 82 THR B 86 5 5 HELIX 6 6 ASP B 115 VAL B 119 5 5 HELIX 7 7 SER B 130 GLN B 138 1 9 HELIX 8 8 ALA B 197 GLN B 201 1 5 SHEET 1 A 2 SER A 2 THR A 4 0 SHEET 2 A 2 ASN A 23 SER A 25 -1 O ASN A 23 N THR A 4 SHEET 1 B 5 HIS A 9 SER A 13 0 SHEET 2 B 5 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 B 5 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 B 5 TYR A 31 GLN A 37 -1 N TYR A 35 O PHE A 89 SHEET 5 B 5 LEU A 43 LYS A 48 -1 O LEU A 46 N TRP A 34 SHEET 1 C 4 HIS A 9 SER A 13 0 SHEET 2 C 4 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 C 4 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 C 4 THR A 103 PHE A 104 -1 O THR A 103 N VAL A 92 SHEET 1 D 4 VAL A 18 LEU A 20 0 SHEET 2 D 4 SER A 72 LYS A 77 -1 O LEU A 75 N LEU A 20 SHEET 3 D 4 GLU A 63 LYS A 67 -1 N GLU A 63 O THR A 76 SHEET 4 D 4 LEU A 55 LYS A 57 -1 N VAL A 56 O ALA A 64 SHEET 1 E 4 ALA A 122 LEU A 126 0 SHEET 2 E 4 VAL A 136 PHE A 142 -1 O LEU A 138 N TYR A 124 SHEET 3 E 4 LYS A 172 TRP A 179 -1 O ALA A 178 N CYS A 137 SHEET 4 E 4 TYR A 157 ILE A 158 -1 N TYR A 157 O TRP A 179 SHEET 1 F 4 ALA A 122 LEU A 126 0 SHEET 2 F 4 VAL A 136 PHE A 142 -1 O LEU A 138 N TYR A 124 SHEET 3 F 4 LYS A 172 TRP A 179 -1 O ALA A 178 N CYS A 137 SHEET 4 F 4 CYS A 162 ASP A 165 -1 N LEU A 164 O SER A 173 SHEET 1 G 2 VAL B 4 GLN B 6 0 SHEET 2 G 2 CYS B 23 GLN B 25 -1 O VAL B 24 N THR B 5 SHEET 1 H 6 TYR B 10 ARG B 14 0 SHEET 2 H 6 THR B 108 VAL B 113 1 O THR B 111 N LYS B 13 SHEET 3 H 6 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 H 6 ASN B 31 ASP B 38 -1 N TYR B 35 O LEU B 90 SHEET 5 H 6 GLY B 42 SER B 49 -1 O TYR B 47 N TRP B 34 SHEET 6 H 6 GLU B 56 LYS B 57 -1 O GLU B 56 N PHE B 48 SHEET 1 I 4 TYR B 10 ARG B 14 0 SHEET 2 I 4 THR B 108 VAL B 113 1 O THR B 111 N LYS B 13 SHEET 3 I 4 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 I 4 THR B 103 PHE B 104 -1 O THR B 103 N SER B 93 SHEET 1 J 3 VAL B 19 LEU B 21 0 SHEET 2 J 3 SER B 75 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 3 J 3 TYR B 64 SER B 67 -1 N SER B 65 O ILE B 77 SHEET 1 K 4 GLU B 123 PHE B 127 0 SHEET 2 K 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 K 4 TYR B 187 SER B 196 -1 O LEU B 189 N ALA B 146 SHEET 4 K 4 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 L 4 GLU B 123 PHE B 127 0 SHEET 2 L 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 L 4 TYR B 187 SER B 196 -1 O LEU B 189 N ALA B 146 SHEET 4 L 4 LEU B 176 LYS B 177 -1 N LEU B 176 O SER B 188 SHEET 1 M 4 LYS B 163 VAL B 165 0 SHEET 2 M 4 VAL B 154 VAL B 160 -1 N VAL B 160 O LYS B 163 SHEET 3 M 4 HIS B 206 PHE B 213 -1 O GLN B 210 N SER B 157 SHEET 4 M 4 GLN B 232 TRP B 239 -1 O GLN B 232 N PHE B 213 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.01 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.04 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.05 SSBOND 4 CYS B 23 CYS B 91 1555 1555 2.02 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.03 CISPEP 1 PHE B 150 PRO B 151 0 -19.58 SITE 1 AC1 7 LEU A 6 GLY A 7 VAL A 10 LEU A 19 SITE 2 AC1 7 ARG A 21 THR A 108 HOH A 617 SITE 1 AC2 7 LEU A 45 LYS A 48 PHE A 97 HOH A 618 SITE 2 AC2 7 PRO B 99 TYR B 100 GLY B 101 SITE 1 AC3 7 ILE A 116 GLN A 117 ASP A 141 PHE A 142 SITE 2 AC3 7 LYS A 172 SER A 173 ASN A 174 SITE 1 AC4 6 SER A 2 VAL A 3 THR A 4 ASN A 23 SITE 2 AC4 6 TYR A 24 SER A 25 SITE 1 AC5 4 LEU A 43 GLN A 44 LEU A 45 HOH A 614 SITE 1 AC6 1 HIS A 9 SITE 1 AC7 3 ASN A 99 GLU A 100 THR B 96 SITE 1 AC8 3 ASP B 28 GLU B 30 SER B 95 CRYST1 69.240 49.660 72.610 90.00 94.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014443 0.000000 0.001094 0.00000 SCALE2 0.000000 0.020137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013812 0.00000