HEADER HYDROLASE 13-AUG-12 4GL3 TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLUCOAMYLASE (BACUNI_03963) FROM TITLE 2 BACTEROIDES UNIFORMIS ATCC 8492 AT 2.01 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUCOAMYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 3 ORGANISM_TAXID: 411479; SOURCE 4 STRAIN: ATCC 8492; SOURCE 5 GENE: BACUNI_03963; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF10091 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 30-OCT-24 4GL3 1 REMARK REVDAT 4 01-FEB-23 4GL3 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4GL3 1 JRNL REVDAT 2 15-NOV-17 4GL3 1 REMARK REVDAT 1 29-AUG-12 4GL3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLUCOAMYLASE (BACUNI_03963) JRNL TITL 2 FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 2.01 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3319 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 0.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3516 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2442 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4759 ; 1.504 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5880 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;35.832 ;23.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;12.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.027 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4668 29.4419 112.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.0954 T22: 0.0151 REMARK 3 T33: 0.0436 T12: -0.0106 REMARK 3 T13: -0.0140 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.5815 L22: 1.4103 REMARK 3 L33: 1.2665 L12: 0.2318 REMARK 3 L13: 0.0557 L23: -0.2913 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0637 S13: 0.1412 REMARK 3 S21: -0.0506 S22: -0.0647 S23: 0.0005 REMARK 3 S31: -0.3142 S32: 0.0756 S33: 0.0665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.TRIS (TRS), GLYCEROL (GOL) AND POLYETHYLENE GLYCOL (PEG) FROM REMARK 3 THE CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. REMARK 4 REMARK 4 4GL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.9792,0.97883 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 29.028 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.230 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.88700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% POLYETHYLENE GLYCOL 300, 10.0% REMARK 280 GLYCEROL, 5.0% POLYETHYLENE GLYCOL 8000, 0.1M TRIS PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.78400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.09366 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 89.29600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.78400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.09366 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 89.29600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.78400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.09366 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.29600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.78400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.09366 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 89.29600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.78400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.09366 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.29600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.78400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.09366 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 89.29600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.18732 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 178.59200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.18732 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 178.59200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.18732 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 178.59200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.18732 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 178.59200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.18732 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 178.59200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.18732 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 178.59200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 854 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ILE A 27 REMARK 465 ASN A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 LYS A 447 REMARK 465 VAL A 448 REMARK 465 ASP A 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 68 O1 PEG A 504 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 56 -73.81 -104.37 REMARK 500 ASP A 144 78.66 -103.25 REMARK 500 GLN A 194 29.12 48.35 REMARK 500 ASP A 197 54.67 -93.08 REMARK 500 ASN A 219 -150.62 -126.19 REMARK 500 ALA A 246 33.04 -93.14 REMARK 500 PHE A 251 -93.34 -91.30 REMARK 500 ASN A 253 -80.82 -121.87 REMARK 500 ASP A 291 -168.14 -124.87 REMARK 500 ASN A 344 69.59 -155.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417802 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 27-449) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4GL3 A 27 449 UNP A7V8P4 A7V8P4_BACUN 27 449 SEQADV 4GL3 GLY A 0 UNP A7V8P4 EXPRESSION TAG SEQRES 1 A 424 GLY ILE ASN PRO PRO SER GLY VAL THR GLU LYS GLN LEU SEQRES 2 A 424 SER ASP ASP GLU LEU MSE THR LEU VAL GLN LYS GLN THR SEQRES 3 A 424 PHE ARG TYR PHE TRP ASP PHE ALA HIS PRO GLU SER GLY SEQRES 4 A 424 LEU ALA HIS GLU ARG SER ASN GLY GLY ALA GLU THR ALA SEQRES 5 A 424 THR ILE GLY GLY SER GLY PHE GLY VAL MSE ALA ILE ILE SEQRES 6 A 424 VAL GLY ILE GLU ARG GLY PHE VAL THR ARG GLU GLN GLY SEQRES 7 A 424 ALA GLU ARG MSE LEU LYS ILE VAL ARG PHE LEU SER ASP SEQRES 8 A 424 LYS ASN THR ASP SER TYR HIS GLY MSE TRP ALA HIS TRP SEQRES 9 A 424 MSE ASN GLY LYS THR GLY LYS THR ILE PRO PHE SER ARG SEQRES 10 A 424 LYS ASP ASP GLY ALA ASP ILE VAL GLU SER ALA PHE MSE SEQRES 11 A 424 PHE GLU GLY LEU LEU ALA ALA HIS GLN TYR PHE THR LYS SEQRES 12 A 424 ASP ASN PRO THR GLU ASN ARG ILE ARG GLY ILE ILE ASN SEQRES 13 A 424 ASN LEU TRP ARG GLN ALA GLU TRP ASN PHE PHE THR GLN SEQRES 14 A 424 GLY GLN ASP VAL MSE TYR TRP HIS TRP SER PRO ASN ASN SEQRES 15 A 424 GLY TRP ALA MSE ASN HIS GLN ILE LYS GLY HIS ASN GLU SEQRES 16 A 424 CYS HIS ILE VAL TYR ILE LEU GLY ALA SER SER PRO THR SEQRES 17 A 424 TYR PRO ILE ALA GLU SER VAL TYR HIS LYS GLY TRP ALA SEQRES 18 A 424 ASN ALA ASN THR PHE LEU ASN GLY ARG GLU TYR TYR GLY SEQRES 19 A 424 ILE LYS LEU PRO LEU GLY ASN ASN HIS GLY LYS GLY GLY SEQRES 20 A 424 PRO LEU PHE PHE THR HIS TYR SER TYR MSE GLY LEU ASP SEQRES 21 A 424 PRO ARG GLY LEU LYS ASP ARG TYR ALA ASP TYR GLU GLU SEQRES 22 A 424 GLN MSE LYS ALA HIS THR LEU ILE ASN ARG ALA TYR CYS SEQRES 23 A 424 ILE ASP ASN PRO LYS GLY TYR LYS GLY TYR GLY GLU LYS SEQRES 24 A 424 CYS TRP GLY LEU THR ALA SER ASP GLY ASP LYS GLY TYR SEQRES 25 A 424 SER ALA HIS SER PRO GLY ASN ASP ARG GLY VAL ILE THR SEQRES 26 A 424 PRO THR ALA ALA LEU SER SER ILE PRO TYR ALA PRO GLU SEQRES 27 A 424 TYR SER LEU GLU ALA MSE ARG TYR PHE TYR GLU GLU LEU SEQRES 28 A 424 GLY ASP ARG LEU TRP GLY GLU TYR GLY PHE LYS ASP ALA SEQRES 29 A 424 PHE ASN LEU THR GLU ASN TRP PHE ALA PRO SER TYR LEU SEQRES 30 A 424 ALA ILE ASP GLN GLY PRO ILE ILE VAL MSE ILE GLU ASN SEQRES 31 A 424 TYR ARG THR GLY LEU ILE TRP LYS LEU PHE MSE SER HIS SEQRES 32 A 424 PRO ASP VAL GLN LYS GLY LEU ARG ARG LEU GLY PHE THR SEQRES 33 A 424 SER PRO TYR LEU ASN LYS VAL ASP MODRES 4GL3 MSE A 44 MET SELENOMETHIONINE MODRES 4GL3 MSE A 87 MET SELENOMETHIONINE MODRES 4GL3 MSE A 107 MET SELENOMETHIONINE MODRES 4GL3 MSE A 125 MET SELENOMETHIONINE MODRES 4GL3 MSE A 130 MET SELENOMETHIONINE MODRES 4GL3 MSE A 155 MET SELENOMETHIONINE MODRES 4GL3 MSE A 199 MET SELENOMETHIONINE MODRES 4GL3 MSE A 211 MET SELENOMETHIONINE MODRES 4GL3 MSE A 282 MET SELENOMETHIONINE MODRES 4GL3 MSE A 300 MET SELENOMETHIONINE MODRES 4GL3 MSE A 369 MET SELENOMETHIONINE MODRES 4GL3 MSE A 412 MET SELENOMETHIONINE MODRES 4GL3 MSE A 426 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 87 8 HET MSE A 107 8 HET MSE A 125 8 HET MSE A 130 8 HET MSE A 155 8 HET MSE A 199 8 HET MSE A 211 8 HET MSE A 282 13 HET MSE A 300 8 HET MSE A 369 8 HET MSE A 412 8 HET MSE A 426 8 HET TRS A 500 8 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET PEG A 504 7 HET PEG A 505 7 HETNAM MSE SELENOMETHIONINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 8 HOH *397(H2 O) HELIX 1 1 SER A 39 ARG A 53 1 15 HELIX 2 2 ILE A 79 ARG A 95 1 17 HELIX 3 3 THR A 99 ASP A 116 1 18 HELIX 4 4 ILE A 149 PHE A 166 1 18 HELIX 5 5 ASN A 170 ALA A 187 1 18 HELIX 6 6 GLU A 188 GLN A 194 5 7 HELIX 7 7 CYS A 221 SER A 231 1 11 HELIX 8 8 ALA A 237 GLY A 244 1 8 HELIX 9 9 PRO A 273 HIS A 278 5 6 HELIX 10 10 ASP A 295 ASN A 314 1 20 HELIX 11 11 THR A 350 SER A 357 1 8 HELIX 12 12 ALA A 361 GLU A 375 1 15 HELIX 13 13 LEU A 376 LEU A 380 1 5 HELIX 14 14 LEU A 402 GLY A 419 1 18 HELIX 15 15 GLY A 419 SER A 427 1 9 HELIX 16 16 HIS A 428 LEU A 438 1 11 SHEET 1 A 3 THR A 76 THR A 78 0 SHEET 2 A 3 TRP A 129 ASN A 131 -1 O MSE A 130 N ALA A 77 SHEET 3 A 3 THR A 137 ILE A 138 -1 O ILE A 138 N TRP A 129 SHEET 1 B 2 ALA A 147 ASP A 148 0 SHEET 2 B 2 HIS A 202 TRP A 203 -1 O TRP A 203 N ALA A 147 SHEET 1 C 2 LEU A 252 TYR A 257 0 SHEET 2 C 2 ILE A 260 LEU A 264 -1 O PRO A 263 N ASN A 253 SHEET 1 D 2 ALA A 330 SER A 331 0 SHEET 2 D 2 SER A 338 ALA A 339 -1 O SER A 338 N SER A 331 SHEET 1 E 2 TRP A 381 GLY A 382 0 SHEET 2 E 2 GLY A 385 PHE A 386 -1 O GLY A 385 N GLY A 382 SHEET 1 F 2 PHE A 390 ASN A 391 0 SHEET 2 F 2 TRP A 396 PHE A 397 -1 O TRP A 396 N ASN A 391 LINK C LEU A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N THR A 45 1555 1555 1.33 LINK C VAL A 86 N MSE A 87 1555 1555 1.32 LINK C MSE A 87 N ALA A 88 1555 1555 1.34 LINK C ARG A 106 N MSE A 107 1555 1555 1.32 LINK C MSE A 107 N LEU A 108 1555 1555 1.32 LINK C GLY A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N TRP A 126 1555 1555 1.33 LINK C TRP A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ASN A 131 1555 1555 1.33 LINK C PHE A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N PHE A 156 1555 1555 1.34 LINK C VAL A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N TYR A 200 1555 1555 1.34 LINK C ALA A 210 N MSE A 211 1555 1555 1.32 LINK C MSE A 211 N ASN A 212 1555 1555 1.32 LINK C TYR A 281 N MSE A 282 1555 1555 1.30 LINK C MSE A 282 N GLY A 283 1555 1555 1.34 LINK C GLN A 299 N MSE A 300 1555 1555 1.34 LINK C MSE A 300 N LYS A 301 1555 1555 1.33 LINK C ALA A 368 N MSE A 369 1555 1555 1.33 LINK C MSE A 369 N ARG A 370 1555 1555 1.33 LINK C VAL A 411 N MSE A 412 1555 1555 1.33 LINK C MSE A 412 N ILE A 413 1555 1555 1.34 LINK C PHE A 425 N MSE A 426 1555 1555 1.34 LINK C MSE A 426 N SER A 427 1555 1555 1.34 CISPEP 1 GLY A 217 HIS A 218 0 -3.21 SITE 1 AC1 11 HIS A 128 GLU A 151 GLU A 220 PHE A 275 SITE 2 AC1 11 TYR A 337 ILE A 404 GOL A 502 HOH A 680 SITE 3 AC1 11 HOH A 807 HOH A 916 HOH A 960 SITE 1 AC2 3 ASP A 57 PHE A 97 HOH A 687 SITE 1 AC3 10 HIS A 128 ASP A 144 TRP A 201 HIS A 202 SITE 2 AC3 10 HIS A 213 TRS A 500 HOH A 639 HOH A 642 SITE 3 AC3 10 HOH A 762 HOH A 965 SITE 1 AC4 1 GLN A 37 SITE 1 AC5 4 GLU A 68 ARG A 69 TYR A 337 HOH A 997 SITE 1 AC6 8 LEU A 108 ARG A 112 PRO A 171 THR A 172 SITE 2 AC6 8 ARG A 175 HOH A 763 HOH A 908 HOH A 927 CRYST1 121.568 121.568 267.888 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.004749 0.000000 0.00000 SCALE2 0.000000 0.009498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003733 0.00000 CONECT 67 73 CONECT 73 67 74 CONECT 74 73 75 77 CONECT 75 74 76 81 CONECT 76 75 CONECT 77 74 78 CONECT 78 77 79 CONECT 79 78 80 CONECT 80 79 CONECT 81 75 CONECT 397 402 CONECT 402 397 403 CONECT 403 402 404 406 CONECT 404 403 405 410 CONECT 405 404 CONECT 406 403 407 CONECT 407 406 408 CONECT 408 407 409 CONECT 409 408 CONECT 410 404 CONECT 548 557 CONECT 557 548 558 CONECT 558 557 559 561 CONECT 559 558 560 565 CONECT 560 559 CONECT 561 558 562 CONECT 562 561 563 CONECT 563 562 564 CONECT 564 563 CONECT 565 559 CONECT 709 711 CONECT 711 709 712 CONECT 712 711 713 715 CONECT 713 712 714 719 CONECT 714 713 CONECT 715 712 716 CONECT 716 715 717 CONECT 717 716 718 CONECT 718 717 CONECT 719 713 CONECT 750 762 CONECT 762 750 763 CONECT 763 762 764 766 CONECT 764 763 765 770 CONECT 765 764 CONECT 766 763 767 CONECT 767 766 768 CONECT 768 767 769 CONECT 769 768 CONECT 770 764 CONECT 940 949 CONECT 949 940 950 CONECT 950 949 951 953 CONECT 951 950 952 957 CONECT 952 951 CONECT 953 950 954 CONECT 954 953 955 CONECT 955 954 956 CONECT 956 955 CONECT 957 951 CONECT 1333 1338 CONECT 1338 1333 1339 CONECT 1339 1338 1340 1342 CONECT 1340 1339 1341 1346 CONECT 1341 1340 CONECT 1342 1339 1343 CONECT 1343 1342 1344 CONECT 1344 1343 1345 CONECT 1345 1344 CONECT 1346 1340 CONECT 1445 1448 CONECT 1448 1445 1449 CONECT 1449 1448 1450 1452 CONECT 1450 1449 1451 1456 CONECT 1451 1450 CONECT 1452 1449 1453 CONECT 1453 1452 1454 CONECT 1454 1453 1455 CONECT 1455 1454 CONECT 1456 1450 CONECT 2005 2015 CONECT 2015 2005 2016 2017 CONECT 2016 2015 2018 2020 CONECT 2017 2015 2018 2021 CONECT 2018 2016 2017 2019 2028 CONECT 2019 2018 CONECT 2020 2016 2022 CONECT 2021 2017 2023 CONECT 2022 2020 2024 CONECT 2023 2021 2025 CONECT 2024 2022 2026 CONECT 2025 2023 2027 CONECT 2026 2024 CONECT 2027 2025 CONECT 2028 2018 CONECT 2163 2170 CONECT 2170 2163 2171 CONECT 2171 2170 2172 2174 CONECT 2172 2171 2173 2178 CONECT 2173 2172 CONECT 2174 2171 2175 CONECT 2175 2174 2176 CONECT 2176 2175 2177 CONECT 2177 2176 CONECT 2178 2172 CONECT 2693 2696 CONECT 2696 2693 2697 CONECT 2697 2696 2698 2700 CONECT 2698 2697 2699 2704 CONECT 2699 2698 CONECT 2700 2697 2701 CONECT 2701 2700 2702 CONECT 2702 2701 2703 CONECT 2703 2702 CONECT 2704 2698 CONECT 3064 3069 CONECT 3069 3064 3070 CONECT 3070 3069 3071 3073 CONECT 3071 3070 3072 3077 CONECT 3072 3071 CONECT 3073 3070 3074 CONECT 3074 3073 3075 CONECT 3075 3074 3076 CONECT 3076 3075 CONECT 3077 3071 CONECT 3185 3194 CONECT 3194 3185 3195 CONECT 3195 3194 3196 3198 CONECT 3196 3195 3197 3202 CONECT 3197 3196 CONECT 3198 3195 3199 CONECT 3199 3198 3200 CONECT 3200 3199 3201 CONECT 3201 3200 CONECT 3202 3196 CONECT 3372 3373 3374 3375 3376 CONECT 3373 3372 3377 CONECT 3374 3372 3378 CONECT 3375 3372 3379 CONECT 3376 3372 CONECT 3377 3373 CONECT 3378 3374 CONECT 3379 3375 CONECT 3380 3381 3382 CONECT 3381 3380 CONECT 3382 3380 3383 3384 CONECT 3383 3382 CONECT 3384 3382 3385 CONECT 3385 3384 CONECT 3386 3387 3388 CONECT 3387 3386 CONECT 3388 3386 3389 3390 CONECT 3389 3388 CONECT 3390 3388 3391 CONECT 3391 3390 CONECT 3392 3393 3394 CONECT 3393 3392 CONECT 3394 3392 3395 3396 CONECT 3395 3394 CONECT 3396 3394 3397 CONECT 3397 3396 CONECT 3398 3399 3400 CONECT 3399 3398 CONECT 3400 3398 3401 CONECT 3401 3400 3402 CONECT 3402 3401 3403 CONECT 3403 3402 3404 CONECT 3404 3403 CONECT 3405 3406 3407 CONECT 3406 3405 CONECT 3407 3405 3408 CONECT 3408 3407 3409 CONECT 3409 3408 3410 CONECT 3410 3409 3411 CONECT 3411 3410 MASTER 427 0 19 16 13 0 11 6 3756 1 175 33 END