HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-AUG-12 4GL6 TITLE CRYSTAL STRUCTURE OF A DUF5037 FAMILY PROTEIN (RUMGNA_01148) FROM TITLE 2 RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 STRAIN: ATCC 29149; SOURCE 5 GENE: RUMGNA_01148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4GL6 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4GL6 1 JRNL REVDAT 3 11-OCT-17 4GL6 1 REMARK REVDAT 2 24-DEC-14 4GL6 1 TITLE REVDAT 1 03-OCT-12 4GL6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (RUMGNA_01148) JRNL TITL 2 FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.91000 REMARK 3 B22 (A**2) : -4.81000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.469 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4008 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2700 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5415 ; 1.646 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6614 ; 1.404 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 3.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;34.916 ;26.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4507 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7710 3.9660 8.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.3097 REMARK 3 T33: 0.1700 T12: 0.0169 REMARK 3 T13: -0.1395 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.8428 L22: 1.8870 REMARK 3 L33: 2.4383 L12: -0.0154 REMARK 3 L13: -0.5930 L23: 0.4604 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.2568 S13: -0.2560 REMARK 3 S21: 0.1769 S22: -0.1189 S23: -0.1694 REMARK 3 S31: 0.2136 S32: 0.2090 S33: 0.1753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6630 32.9430 0.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.2296 REMARK 3 T33: 0.2444 T12: 0.0602 REMARK 3 T13: -0.0551 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.9948 L22: 2.3568 REMARK 3 L33: 1.6133 L12: 0.9939 REMARK 3 L13: 0.0306 L23: 0.2430 REMARK 3 S TENSOR REMARK 3 S11: 0.2021 S12: 0.0403 S13: 0.5524 REMARK 3 S21: -0.0804 S22: -0.0898 S23: -0.1025 REMARK 3 S31: -0.1229 S32: 0.0814 S33: -0.1123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. GLYCEROL (GOL) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4GL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.971 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5, 20% REMARK 280 GLYCEROL, 16% POLYETHYLENE GLYCOL 8000, 0.16M MAGNESIUM ACETATE, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.32650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.06950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.32650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.06950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 HIS A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 265 REMARK 465 GLN A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 TYR A 269 REMARK 465 GLN A 270 REMARK 465 GLU B 265 REMARK 465 GLN B 266 REMARK 465 GLU B 267 REMARK 465 LYS B 268 REMARK 465 TYR B 269 REMARK 465 GLN B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 141.39 174.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417402 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-270 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4GL6 A 25 270 UNP A7B0S2 A7B0S2_RUMGN 25 270 DBREF 4GL6 B 25 270 UNP A7B0S2 A7B0S2_RUMGN 25 270 SEQADV 4GL6 GLY A 0 UNP A7B0S2 EXPRESSION TAG SEQADV 4GL6 GLY B 0 UNP A7B0S2 EXPRESSION TAG SEQRES 1 A 247 GLY HIS GLU ASN GLU ILE SER ILE LYS ILE GLU THR TYR SEQRES 2 A 247 LEU GLN GLU GLU TYR GLY GLU GLU PHE GLU VAL LEU SER SEQRES 3 A 247 TRP ASN GLN PRO LYS LEU LEU PRO SER ASP ASN GLY ALA SEQRES 4 A 247 ILE TYR ALA THR CYS ILE SER LYS ASN ASP PRO LYS HIS SEQRES 5 A 247 PRO PHE GLU GLY SER TYR PHE ASN PRO GLU GLU PRO ASN SEQRES 6 A 247 SER GLU ILE GLU ILE ILE TYR ASP GLY TYR GLY GLN ARG SEQRES 7 A 247 LEU LEU ALA LYS GLN MSE GLU SER MSE ILE GLU GLU ALA SEQRES 8 A 247 ILE SER GLN ALA ALA GLU ASN TYR TYR ILE GLN GLY ASP SEQRES 9 A 247 ILE ILE ILE PRO GLU GLU TRP GLN ASP ILE PRO VAL GLU SEQRES 10 A 247 GLU ILE SER GLN TRP LYS ASN TYR VAL ASP LEU CYS ASN SEQRES 11 A 247 GLN SER ASN SER ASP TYR LYS THR LEU GLY SER ALA TRP SEQRES 12 A 247 VAL TYR ILE ASP ALA SER THR MSE LYS GLY LYS THR ASP SEQRES 13 A 247 GLU GLU GLU TYR GLN MSE TYR GLU GLU VAL TYR ARG ASP SEQRES 14 A 247 LYS LEU GLY GLY GLN ALA LEU LEU TYR VAL TYR TYR LEU SEQRES 15 A 247 ASP HIS LYS SER PHE GLU LYS ALA GLU LYS ILE LEU GLU SEQRES 16 A 247 ILE PHE THR SER GLY ASP GLU GLY SER ASN PHE GLU ASP SEQRES 17 A 247 ILE ILE GLU GLY GLN PRO TYR PHE GLY THR ILE MSE ARG SEQRES 18 A 247 TYR GLY SER ASP LYS PHE ASP ASP ASN LEU GLU ILE PHE SEQRES 19 A 247 LYS ALA ALA LYS GLN GLY LYS GLU GLN GLU LYS TYR GLN SEQRES 1 B 247 GLY HIS GLU ASN GLU ILE SER ILE LYS ILE GLU THR TYR SEQRES 2 B 247 LEU GLN GLU GLU TYR GLY GLU GLU PHE GLU VAL LEU SER SEQRES 3 B 247 TRP ASN GLN PRO LYS LEU LEU PRO SER ASP ASN GLY ALA SEQRES 4 B 247 ILE TYR ALA THR CYS ILE SER LYS ASN ASP PRO LYS HIS SEQRES 5 B 247 PRO PHE GLU GLY SER TYR PHE ASN PRO GLU GLU PRO ASN SEQRES 6 B 247 SER GLU ILE GLU ILE ILE TYR ASP GLY TYR GLY GLN ARG SEQRES 7 B 247 LEU LEU ALA LYS GLN MSE GLU SER MSE ILE GLU GLU ALA SEQRES 8 B 247 ILE SER GLN ALA ALA GLU ASN TYR TYR ILE GLN GLY ASP SEQRES 9 B 247 ILE ILE ILE PRO GLU GLU TRP GLN ASP ILE PRO VAL GLU SEQRES 10 B 247 GLU ILE SER GLN TRP LYS ASN TYR VAL ASP LEU CYS ASN SEQRES 11 B 247 GLN SER ASN SER ASP TYR LYS THR LEU GLY SER ALA TRP SEQRES 12 B 247 VAL TYR ILE ASP ALA SER THR MSE LYS GLY LYS THR ASP SEQRES 13 B 247 GLU GLU GLU TYR GLN MSE TYR GLU GLU VAL TYR ARG ASP SEQRES 14 B 247 LYS LEU GLY GLY GLN ALA LEU LEU TYR VAL TYR TYR LEU SEQRES 15 B 247 ASP HIS LYS SER PHE GLU LYS ALA GLU LYS ILE LEU GLU SEQRES 16 B 247 ILE PHE THR SER GLY ASP GLU GLY SER ASN PHE GLU ASP SEQRES 17 B 247 ILE ILE GLU GLY GLN PRO TYR PHE GLY THR ILE MSE ARG SEQRES 18 B 247 TYR GLY SER ASP LYS PHE ASP ASP ASN LEU GLU ILE PHE SEQRES 19 B 247 LYS ALA ALA LYS GLN GLY LYS GLU GLN GLU LYS TYR GLN MODRES 4GL6 MSE A 107 MET SELENOMETHIONINE MODRES 4GL6 MSE A 110 MET SELENOMETHIONINE MODRES 4GL6 MSE A 174 MET SELENOMETHIONINE MODRES 4GL6 MSE A 185 MET SELENOMETHIONINE MODRES 4GL6 MSE A 243 MET SELENOMETHIONINE MODRES 4GL6 MSE B 107 MET SELENOMETHIONINE MODRES 4GL6 MSE B 110 MET SELENOMETHIONINE MODRES 4GL6 MSE B 174 MET SELENOMETHIONINE MODRES 4GL6 MSE B 185 MET SELENOMETHIONINE MODRES 4GL6 MSE B 243 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 110 8 HET MSE A 174 8 HET MSE A 185 8 HET MSE A 243 8 HET MSE B 107 8 HET MSE B 110 8 HET MSE B 174 8 HET MSE B 185 8 HET MSE B 243 8 HET GOL A 301 6 HET GOL A 302 6 HET GOL B 300 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *26(H2 O) HELIX 1 1 GLU A 28 GLY A 42 1 15 HELIX 2 2 GLY A 97 ALA A 119 1 23 HELIX 3 3 PRO A 131 GLN A 135 5 5 HELIX 4 4 PRO A 138 SER A 143 1 6 HELIX 5 5 GLN A 144 ASN A 153 1 10 HELIX 6 6 SER A 172 MSE A 174 5 3 HELIX 7 7 THR A 178 LYS A 193 1 16 HELIX 8 8 ASP A 206 GLU A 218 1 13 HELIX 9 9 GLY A 226 GLU A 234 1 9 HELIX 10 10 ASN A 253 GLY A 263 1 11 HELIX 11 11 GLY B 0 ASN B 27 5 4 HELIX 12 12 GLU B 28 GLY B 42 1 15 HELIX 13 13 GLY B 97 ALA B 119 1 23 HELIX 14 14 PRO B 131 GLN B 135 5 5 HELIX 15 15 PRO B 138 SER B 143 1 6 HELIX 16 16 GLN B 144 SER B 155 1 12 HELIX 17 17 ASN B 156 TYR B 159 5 4 HELIX 18 18 SER B 172 MSE B 174 5 3 HELIX 19 19 THR B 178 LYS B 193 1 16 HELIX 20 20 ASP B 206 GLU B 218 1 13 HELIX 21 21 GLY B 226 GLU B 234 1 9 HELIX 22 22 ASN B 253 GLY B 263 1 11 SHEET 1 A 4 PHE A 45 ASN A 51 0 SHEET 2 A 4 ILE A 63 SER A 69 -1 O TYR A 64 N ASN A 51 SHEET 3 A 4 PHE A 77 PHE A 82 -1 O PHE A 77 N CYS A 67 SHEET 4 A 4 GLU A 92 TYR A 95 -1 O GLU A 92 N PHE A 82 SHEET 1 B 4 TYR A 122 ASP A 127 0 SHEET 2 B 4 GLY A 163 ASP A 170 -1 O TYR A 168 N TYR A 123 SHEET 3 B 4 ALA A 198 LEU A 205 1 O TYR A 203 N ILE A 169 SHEET 4 B 4 TYR A 238 MSE A 243 -1 O THR A 241 N LEU A 200 SHEET 1 C 4 PHE B 45 ASN B 51 0 SHEET 2 C 4 ILE B 63 SER B 69 -1 O TYR B 64 N ASN B 51 SHEET 3 C 4 PHE B 77 PHE B 82 -1 O TYR B 81 N ILE B 63 SHEET 4 C 4 GLU B 92 TYR B 95 -1 O GLU B 92 N PHE B 82 SHEET 1 D 4 TYR B 122 ASP B 127 0 SHEET 2 D 4 THR B 161 ASP B 170 -1 O TYR B 168 N TYR B 123 SHEET 3 D 4 GLN B 197 LEU B 205 1 O GLN B 197 N LEU B 162 SHEET 4 D 4 TYR B 238 MSE B 243 -1 O THR B 241 N LEU B 200 LINK C GLN A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLU A 108 1555 1555 1.33 LINK C SER A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ILE A 111 1555 1555 1.33 LINK C THR A 173 N MSE A 174 1555 1555 1.35 LINK C MSE A 174 N LYS A 175 1555 1555 1.34 LINK C GLN A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N TYR A 186 1555 1555 1.33 LINK C ILE A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N ARG A 244 1555 1555 1.33 LINK C GLN B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N GLU B 108 1555 1555 1.33 LINK C SER B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N ILE B 111 1555 1555 1.33 LINK C THR B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N LYS B 175 1555 1555 1.34 LINK C GLN B 184 N MSE B 185 1555 1555 1.34 LINK C MSE B 185 N TYR B 186 1555 1555 1.33 LINK C ILE B 242 N MSE B 243 1555 1555 1.33 LINK C MSE B 243 N ARG B 244 1555 1555 1.33 SITE 1 AC1 4 HIS A 75 GLU A 112 TYR A 122 HOH A 401 SITE 1 AC2 7 ASN A 51 GLU A 78 ASP A 224 LYS B 175 SITE 2 AC2 7 GLY B 176 LYS B 177 GLU B 181 SITE 1 AC3 6 HIS B 75 GLU B 112 TYR B 122 TYR B 123 SITE 2 AC3 6 ILE B 124 HOH B 410 CRYST1 148.653 84.139 53.031 90.00 98.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006727 0.000000 0.000982 0.00000 SCALE2 0.000000 0.011885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019057 0.00000