HEADER TRANSFERASE 14-AUG-12 4GLJ TITLE CRYSTAL STRUCTURE OF METHYLTHIOADENOSINE PHOSPHORYLASE IN COMPLEX WITH TITLE 2 RHODAMINE B CAVEAT 4GLJ THE LIGAND RHB #301 HAS A CORRELATION COEFFICIENT OF 0.631 CAVEAT 2 4GLJ AND A REAL SPACE OF 0.357. THE LIGAND RHB #302 HAS A CAVEAT 3 4GLJ CORRELATION COEFFICIENT OF 0.544 AND A REAL SPACE OF 0.430 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSFP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: RSFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LMG194; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD-MYC-HISA KEYWDS METHYLTHIOADENOSINE PHOSPHORYLASE, METHYLTHIOADENOSINE, RHODAMINE B, KEYWDS 2 METHAGENOMIC LIBRARY, ANTARCTIC SOIL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BUJACZ,G.BUJACZ,H.CIESLINSKI,P.BARTASUN REVDAT 3 13-SEP-23 4GLJ 1 REMARK REVDAT 2 15-NOV-17 4GLJ 1 REMARK REVDAT 1 20-FEB-13 4GLJ 0 JRNL AUTH P.BARTASUN,H.CIESLINSKI,A.BUJACZ,A.WIERZBICKA-WOS,J.KUR JRNL TITL A STUDY ON THE INTERACTION OF RHODAMINE B WITH JRNL TITL 2 METHYLTHIOADENOSINE PHOSPHORYLASE PROTEIN SOURCED FROM AN JRNL TITL 3 ANTARCTIC SOIL METAGENOMIC LIBRARY. JRNL REF PLOS ONE V. 8 55697 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23383268 JRNL DOI 10.1371/JOURNAL.PONE.0055697 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2337 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3194 ; 2.042 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 6.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.476 ;24.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;14.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1765 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9599 50.8603 64.0101 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.1644 REMARK 3 T33: 0.2677 T12: 0.0731 REMARK 3 T13: 0.0734 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.8851 L22: 3.8970 REMARK 3 L33: 2.9718 L12: -2.3936 REMARK 3 L13: 0.3549 L23: 2.0645 REMARK 3 S TENSOR REMARK 3 S11: -0.2995 S12: -0.2434 S13: 0.5277 REMARK 3 S21: -0.0139 S22: 0.1780 S23: -0.3520 REMARK 3 S31: -0.4203 S32: -0.0648 S33: 0.1215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9844 44.2821 66.7928 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.0826 REMARK 3 T33: 0.0897 T12: 0.0742 REMARK 3 T13: 0.0065 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 4.4562 L22: 0.9989 REMARK 3 L33: 0.5947 L12: -1.0120 REMARK 3 L13: -0.8689 L23: 0.6904 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.3100 S13: 0.4871 REMARK 3 S21: 0.2365 S22: -0.0275 S23: 0.0164 REMARK 3 S31: -0.0167 S32: -0.0723 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0513 36.8446 66.4503 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.1466 REMARK 3 T33: 0.0507 T12: 0.1555 REMARK 3 T13: 0.0816 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 11.8001 L22: 0.7199 REMARK 3 L33: 4.8707 L12: -2.3716 REMARK 3 L13: -0.0452 L23: 1.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.3205 S12: -0.2378 S13: 0.1553 REMARK 3 S21: 0.1503 S22: 0.0539 S23: 0.0520 REMARK 3 S31: 0.0437 S32: -0.3391 S33: 0.2666 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9734 40.7065 46.9181 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0234 REMARK 3 T33: 0.0334 T12: 0.0095 REMARK 3 T13: -0.0307 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.6578 L22: 1.9981 REMARK 3 L33: 0.6964 L12: -0.9090 REMARK 3 L13: 0.5077 L23: -0.3764 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.1353 S13: 0.1907 REMARK 3 S21: -0.1884 S22: -0.1082 S23: -0.0676 REMARK 3 S31: -0.1785 S32: 0.0366 S33: 0.1275 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1993 24.4720 61.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0530 REMARK 3 T33: 0.0300 T12: 0.0144 REMARK 3 T13: 0.0188 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7782 L22: 3.1949 REMARK 3 L33: 2.8296 L12: 1.9721 REMARK 3 L13: -2.3420 L23: -0.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.2085 S13: -0.1359 REMARK 3 S21: 0.1240 S22: -0.2014 S23: 0.1040 REMARK 3 S31: 0.1596 S32: 0.1286 S33: 0.2570 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5589 45.2433 45.3993 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1537 REMARK 3 T33: 0.0648 T12: 0.0634 REMARK 3 T13: -0.0323 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.3283 L22: 15.0352 REMARK 3 L33: 3.6111 L12: -1.6294 REMARK 3 L13: 0.8760 L23: -3.6756 REMARK 3 S TENSOR REMARK 3 S11: -0.1608 S12: 0.1219 S13: 0.1102 REMARK 3 S21: -0.3629 S22: 0.3756 S23: 0.5783 REMARK 3 S31: -0.3017 S32: -0.5853 S33: -0.2148 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3884 40.1794 47.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.0202 REMARK 3 T33: 0.0242 T12: 0.0304 REMARK 3 T13: -0.0249 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 4.8129 L22: 3.5570 REMARK 3 L33: 2.3178 L12: -1.7784 REMARK 3 L13: 1.2541 L23: -2.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.1481 S13: 0.2554 REMARK 3 S21: -0.0755 S22: 0.0493 S23: 0.0636 REMARK 3 S31: -0.3227 S32: -0.1346 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3555 31.2109 42.8061 REMARK 3 T TENSOR REMARK 3 T11: 0.1055 T22: 0.0222 REMARK 3 T33: 0.0324 T12: 0.0039 REMARK 3 T13: -0.0276 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 20.9152 L22: 5.5376 REMARK 3 L33: 9.9734 L12: -2.2532 REMARK 3 L13: 6.5025 L23: 2.5838 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.5232 S13: -0.5601 REMARK 3 S21: -0.6916 S22: -0.1464 S23: 0.3237 REMARK 3 S31: -0.1165 S32: -0.0826 S33: 0.1159 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0150 33.8038 55.4708 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0340 REMARK 3 T33: 0.0292 T12: 0.0218 REMARK 3 T13: -0.0280 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.1208 L22: 1.2431 REMARK 3 L33: 2.9799 L12: 1.1632 REMARK 3 L13: -3.4745 L23: -1.1816 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.2568 S13: 0.0016 REMARK 3 S21: 0.0504 S22: 0.0264 S23: 0.0700 REMARK 3 S31: -0.0097 S32: -0.2162 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1139 43.3152 48.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.0976 REMARK 3 T33: 0.1023 T12: 0.0078 REMARK 3 T13: -0.0460 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 6.9379 L22: 5.4813 REMARK 3 L33: 8.7729 L12: 5.5152 REMARK 3 L13: -3.6732 L23: -3.2692 REMARK 3 S TENSOR REMARK 3 S11: -0.5340 S12: 0.0865 S13: -0.1098 REMARK 3 S21: -0.2224 S22: 0.2896 S23: -0.3778 REMARK 3 S31: -0.1157 S32: 0.4480 S33: 0.2444 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9485 47.4781 45.1038 REMARK 3 T TENSOR REMARK 3 T11: 1.1406 T22: 1.2762 REMARK 3 T33: 1.1448 T12: -0.1979 REMARK 3 T13: 0.0820 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.0349 L22: 0.0191 REMARK 3 L33: 0.0003 L12: -0.0186 REMARK 3 L13: 0.0022 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.1852 S13: 0.0686 REMARK 3 S21: -0.0775 S22: 0.0965 S23: -0.0761 REMARK 3 S31: 0.0031 S32: -0.0189 S33: -0.0345 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2221 51.9353 51.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1061 REMARK 3 T33: 0.0865 T12: 0.0803 REMARK 3 T13: -0.0091 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 17.0263 L22: 6.7244 REMARK 3 L33: 4.4659 L12: 5.1400 REMARK 3 L13: -1.6623 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: -0.6359 S13: 0.7618 REMARK 3 S21: 0.0840 S22: -0.1574 S23: -0.0223 REMARK 3 S31: -0.5339 S32: 0.2127 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9321 24.8240 65.4641 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.2546 REMARK 3 T33: 0.1928 T12: 0.0290 REMARK 3 T13: 0.0606 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 5.8068 REMARK 3 L33: 6.0220 L12: 0.1007 REMARK 3 L13: -0.1608 L23: -4.6503 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.0307 S13: 0.0002 REMARK 3 S21: 0.0297 S22: 0.2305 S23: 0.6631 REMARK 3 S31: 0.1563 S32: -0.6670 S33: -0.2252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: RIGID BODY OF APO MODEL IN REFMAC REMARK 200 STARTING MODEL: 4GLF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%PPG400, 75MM MGCL2, BIS-TRIS, 10MM REMARK 280 RHODAMINE B , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.63000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.63000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 80.26000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 40.13000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 69.50720 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 VAL A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 109 -7.13 77.93 REMARK 500 ASP A 222 171.91 176.55 REMARK 500 TRP A 226 3.58 -60.36 REMARK 500 PRO A 228 76.20 -64.57 REMARK 500 ASN A 229 8.15 -61.81 REMARK 500 ALA A 232 -2.84 -55.25 REMARK 500 VAL A 233 37.47 -92.43 REMARK 500 SER A 234 -31.67 -133.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RHB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RHB A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GLF RELATED DB: PDB REMARK 900 APO FORM DBREF 4GLJ A 1 297 UNP C6KFA4 C6KFA4_9BACT 1 297 SEQRES 1 A 297 MET THR SER THR ALA VAL GLU ILE THR VAL LYS ASN ALA SEQRES 2 A 297 ALA ASP ILE ALA ILE ILE GLY GLY SER GLY LEU TYR GLN SEQRES 3 A 297 MET GLN ALA LEU THR ASN LYS ARG SER VAL LYS ILE GLU SEQRES 4 A 297 THR PRO TYR GLY GLU PRO SER ASP ASP ILE VAL LEU GLY SEQRES 5 A 297 GLU LEU ASN GLY VAL THR VAL ALA PHE LEU THR ARG HIS SEQRES 6 A 297 GLY GLN GLY HIS ARG LEU THR PRO SER GLU VAL PRO TYR SEQRES 7 A 297 ARG ALA ASN ILE TYR ALA LEU LYS THR LEU GLY VAL ARG SEQRES 8 A 297 TYR ILE VAL SER VAL SER ALA VAL GLY SER LEU GLN GLU SEQRES 9 A 297 THR LEU LYS PRO LEU ASP MET VAL ILE PRO ASP GLN MET SEQRES 10 A 297 ILE ASP MET THR LYS GLN ARG VAL SER THR PHE PHE GLY SEQRES 11 A 297 ASP GLY ALA VAL ALA HIS VAL SER MET ALA ASP PRO LEU SEQRES 12 A 297 CYS PRO GLU VAL ALA ASP ILE LEU ILE ARG ALA TYR ASP SEQRES 13 A 297 ASN ALA ASP ILE ALA ASP GLY GLN CYS HIS ALA LYS ALA SEQRES 14 A 297 THR TYR VAL CYS ILE GLU GLY PRO GLN PHE SER THR ARG SEQRES 15 A 297 ALA GLU SER HIS TRP TYR ARG GLN MET GLN ALA ASP ILE SEQRES 16 A 297 ILE GLY MET THR ASN MET PRO GLU ALA LYS LEU ALA ARG SEQRES 17 A 297 GLU ALA SER ILE ALA TYR ALA THR LEU ALA LEU VAL THR SEQRES 18 A 297 ASP PHE ASP CYS TRP HIS PRO ASN GLU GLN ALA VAL SER SEQRES 19 A 297 ALA ASP TYR ALA ILE GLN ASN LEU MET LYS ASN ALA ASP SEQRES 20 A 297 ASN ALA GLN GLN VAL ILE LYS GLN ALA VAL ALA LEU ILE SEQRES 21 A 297 ALA SER GLU GLN PRO LYS SER ILE ALA HIS THR ALA LEU SEQRES 22 A 297 THR GLN ALA LEU VAL THR PRO VAL GLU ALA MET SER ALA SEQRES 23 A 297 GLU THR LYS THR ARG LEU ALA ALA LEU LEU PRO HET RHB A 301 33 HET RHB A 302 33 HET PO4 A 303 5 HET CL A 304 1 HET CL A 305 1 HETNAM RHB N-[9-(2-CARBOXYPHENYL)-6-(DIETHYLAMINO)-3H-XANTHEN-3- HETNAM 2 RHB YLIDENE]-N-ETHYLETHANAMINIUM HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 2 RHB 2(C28 H31 N2 O3 1+) FORMUL 4 PO4 O4 P 3- FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *180(H2 O) HELIX 1 1 GLY A 66 ARG A 70 5 5 HELIX 2 2 THR A 72 VAL A 76 5 5 HELIX 3 3 PRO A 77 LEU A 88 1 12 HELIX 4 4 CYS A 144 ALA A 158 1 15 HELIX 5 5 THR A 181 MET A 191 1 11 HELIX 6 6 THR A 199 ALA A 210 1 12 HELIX 7 7 ASP A 236 GLN A 264 1 29 HELIX 8 8 SER A 267 ALA A 272 5 6 HELIX 9 9 PRO A 280 MET A 284 5 5 HELIX 10 10 SER A 285 LEU A 292 1 8 HELIX 11 11 ALA A 293 LEU A 296 5 4 SHEET 1 A10 THR A 31 VAL A 36 0 SHEET 2 A10 ILE A 49 LEU A 54 -1 O LEU A 51 N ARG A 34 SHEET 3 A10 VAL A 57 THR A 63 -1 O VAL A 59 N GLY A 52 SHEET 4 A10 ILE A 16 GLY A 20 1 N ILE A 18 O ALA A 60 SHEET 5 A10 TYR A 92 SER A 101 1 O VAL A 96 N ILE A 19 SHEET 6 A10 ALA A 213 PHE A 223 1 O LEU A 217 N SER A 95 SHEET 7 A10 MET A 111 ASP A 119 -1 N VAL A 112 O ALA A 218 SHEET 8 A10 CYS A 165 CYS A 173 1 O HIS A 166 N ILE A 113 SHEET 9 A10 ILE A 195 GLY A 197 1 O ILE A 195 N VAL A 172 SHEET 10 A10 TYR A 92 SER A 101 -1 N GLY A 100 O ILE A 196 CISPEP 1 GLY A 176 PRO A 177 0 -1.51 CISPEP 2 MET A 201 PRO A 202 0 14.79 SITE 1 AC1 15 SER A 22 TYR A 25 HIS A 65 PRO A 73 SITE 2 AC1 15 PHE A 179 ILE A 239 LEU A 242 MET A 243 SITE 3 AC1 15 GLN A 275 VAL A 278 RHB A 302 PO4 A 303 SITE 4 AC1 15 CL A 305 HOH A 435 HOH A 574 SITE 1 AC2 19 ALA A 98 GLY A 100 PHE A 179 ILE A 196 SITE 2 AC2 19 GLY A 197 MET A 198 THR A 221 ASP A 222 SITE 3 AC2 19 PHE A 223 ASP A 224 CYS A 225 ASN A 229 SITE 4 AC2 19 ALA A 238 RHB A 301 CL A 304 HOH A 482 SITE 5 AC2 19 HOH A 575 HOH A 576 HOH A 579 SITE 1 AC3 10 GLY A 21 SER A 22 ARG A 64 HIS A 65 SITE 2 AC3 10 SER A 97 ALA A 98 THR A 199 RHB A 301 SITE 3 AC3 10 HOH A 457 HOH A 482 SITE 1 AC4 4 ASP A 222 ASN A 229 SER A 234 RHB A 302 SITE 1 AC5 1 RHB A 301 CRYST1 80.260 80.260 81.260 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012460 0.007193 0.000000 0.00000 SCALE2 0.000000 0.014387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012306 0.00000