HEADER LYASE 14-AUG-12 4GLL TITLE CRYSTAL STRUCTURE OF HUMAN UDP-XYLOSE SYNTHASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCURONIC ACID DECARBOXYLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE UXS DOMAIN; RESIDUES 85-420; COMPND 5 SYNONYM: UDP-GLUCURONATE DECARBOXYLASE 1, UGD, UXS-1; COMPND 6 EC: 4.1.1.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UNQ2538/PRO6079, UXS, UXS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SHORT-CHAIN DEHYDROGENASE/REDUCTASE, DECARBOXYLASE, LYASE, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR Z.A.WOOD,S.J.POLIZZI REVDAT 5 13-SEP-23 4GLL 1 REMARK SEQADV REVDAT 4 17-JUL-19 4GLL 1 REMARK REVDAT 3 02-MAY-18 4GLL 1 JRNL REVDAT 2 14-NOV-12 4GLL 1 JRNL REVDAT 1 05-SEP-12 4GLL 0 SPRSDE 05-SEP-12 4GLL 4EF7 JRNL AUTH S.J.POLIZZI,R.M.WALSH JR.,W.B.PEEPLES,J.M.LIM,L.WELLS, JRNL AUTH 2 Z.A.WOOD JRNL TITL HUMAN UDP-ALPHA-D-XYLOSE SYNTHASE AND ESCHERICHIA COLI ARNA JRNL TITL 2 CONSERVE A CONFORMATIONAL SHUNT THAT CONTROLS WHETHER XYLOSE JRNL TITL 3 OR 4-KETO-XYLOSE IS PRODUCED. JRNL REF BIOCHEMISTRY V. 51 8844 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23072385 JRNL DOI 10.1021/BI301135B REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5056 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6865 ; 1.440 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 7.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;37.542 ;24.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 847 ;19.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3826 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3049 ; 2.911 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4918 ; 4.581 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2007 ; 3.423 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 5.189 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2376 ; 0.59 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2376 ; 4.39 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2B69 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M AMMONIUM SULFATE, 0.1 M REMARK 280 MAGNESIUM FORMATE AND 0.15% 1.5K PEG, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.94667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.97333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.97333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 84 REMARK 465 GLU A 85 REMARK 465 LYS A 86 REMARK 465 ASP A 87 REMARK 465 LEU A 395 REMARK 465 GLU A 396 REMARK 465 TYR A 397 REMARK 465 GLN A 398 REMARK 465 ALA A 399 REMARK 465 ASN A 400 REMARK 465 ASN A 401 REMARK 465 GLN A 402 REMARK 465 TYR A 403 REMARK 465 ILE A 404 REMARK 465 PRO A 405 REMARK 465 LYS A 406 REMARK 465 PRO A 407 REMARK 465 LYS A 408 REMARK 465 PRO A 409 REMARK 465 ALA A 410 REMARK 465 ARG A 411 REMARK 465 ILE A 412 REMARK 465 LYS A 413 REMARK 465 LYS A 414 REMARK 465 GLY A 415 REMARK 465 ARG A 416 REMARK 465 THR A 417 REMARK 465 ARG A 418 REMARK 465 HIS A 419 REMARK 465 SER A 420 REMARK 465 MET B 84 REMARK 465 GLU B 85 REMARK 465 LYS B 86 REMARK 465 ASP B 87 REMARK 465 PRO B 166 REMARK 465 ASN B 167 REMARK 465 TYR B 168 REMARK 465 MET B 169 REMARK 465 TYR B 170 REMARK 465 ALA B 399 REMARK 465 ASN B 400 REMARK 465 ASN B 401 REMARK 465 GLN B 402 REMARK 465 TYR B 403 REMARK 465 ILE B 404 REMARK 465 PRO B 405 REMARK 465 LYS B 406 REMARK 465 PRO B 407 REMARK 465 LYS B 408 REMARK 465 PRO B 409 REMARK 465 ALA B 410 REMARK 465 ARG B 411 REMARK 465 ILE B 412 REMARK 465 LYS B 413 REMARK 465 LYS B 414 REMARK 465 GLY B 415 REMARK 465 ARG B 416 REMARK 465 THR B 417 REMARK 465 ARG B 418 REMARK 465 HIS B 419 REMARK 465 SER B 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 99 -73.76 -56.05 REMARK 500 SER A 161 132.46 179.13 REMARK 500 ARG A 265 -1.64 84.06 REMARK 500 PHE B 99 -72.00 -55.49 REMARK 500 ASP B 119 138.85 -174.94 REMARK 500 ALA B 160 98.25 -68.83 REMARK 500 THR B 180 -84.28 -92.44 REMARK 500 PRO B 213 -178.97 -68.73 REMARK 500 ARG B 265 -3.16 92.93 REMARK 500 ASN B 269 59.36 -92.28 REMARK 500 SER B 344 -8.94 -152.43 REMARK 500 GLN B 349 120.17 -171.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAI A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B69 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH URIDINE DIPHOSPHATE (UDP). THE 2B69 REMARK 900 PROTEIN CONSTRUCT HAS A ~20 AMINO ACID TRUNCATION AT THE C-TERMINUS REMARK 900 THAT REMOVES A PREDICTED DISORDERED HELIX. DBREF 4GLL A 85 420 UNP Q8NBZ7 UXS1_HUMAN 85 420 DBREF 4GLL B 85 420 UNP Q8NBZ7 UXS1_HUMAN 85 420 SEQADV 4GLL MET A 84 UNP Q8NBZ7 EXPRESSION TAG SEQADV 4GLL MET B 84 UNP Q8NBZ7 EXPRESSION TAG SEQRES 1 A 337 MET GLU LYS ASP ARG LYS ARG ILE LEU ILE THR GLY GLY SEQRES 2 A 337 ALA GLY PHE VAL GLY SER HIS LEU THR ASP LYS LEU MET SEQRES 3 A 337 MET ASP GLY HIS GLU VAL THR VAL VAL ASP ASN PHE PHE SEQRES 4 A 337 THR GLY ARG LYS ARG ASN VAL GLU HIS TRP ILE GLY HIS SEQRES 5 A 337 GLU ASN PHE GLU LEU ILE ASN HIS ASP VAL VAL GLU PRO SEQRES 6 A 337 LEU TYR ILE GLU VAL ASP GLN ILE TYR HIS LEU ALA SER SEQRES 7 A 337 PRO ALA SER PRO PRO ASN TYR MET TYR ASN PRO ILE LYS SEQRES 8 A 337 THR LEU LYS THR ASN THR ILE GLY THR LEU ASN MET LEU SEQRES 9 A 337 GLY LEU ALA LYS ARG VAL GLY ALA ARG LEU LEU LEU ALA SEQRES 10 A 337 SER THR SER GLU VAL TYR GLY ASP PRO GLU VAL HIS PRO SEQRES 11 A 337 GLN SER GLU ASP TYR TRP GLY HIS VAL ASN PRO ILE GLY SEQRES 12 A 337 PRO ARG ALA CYS TYR ASP GLU GLY LYS ARG VAL ALA GLU SEQRES 13 A 337 THR MET CYS TYR ALA TYR MET LYS GLN GLU GLY VAL GLU SEQRES 14 A 337 VAL ARG VAL ALA ARG ILE PHE ASN THR PHE GLY PRO ARG SEQRES 15 A 337 MET HIS MET ASN ASP GLY ARG VAL VAL SER ASN PHE ILE SEQRES 16 A 337 LEU GLN ALA LEU GLN GLY GLU PRO LEU THR VAL TYR GLY SEQRES 17 A 337 SER GLY SER GLN THR ARG ALA PHE GLN TYR VAL SER ASP SEQRES 18 A 337 LEU VAL ASN GLY LEU VAL ALA LEU MET ASN SER ASN VAL SEQRES 19 A 337 SER SER PRO VAL ASN LEU GLY ASN PRO GLU GLU HIS THR SEQRES 20 A 337 ILE LEU GLU PHE ALA GLN LEU ILE LYS ASN LEU VAL GLY SEQRES 21 A 337 SER GLY SER GLU ILE GLN PHE LEU SER GLU ALA GLN ASP SEQRES 22 A 337 ASP PRO GLN LYS ARG LYS PRO ASP ILE LYS LYS ALA LYS SEQRES 23 A 337 LEU MET LEU GLY TRP GLU PRO VAL VAL PRO LEU GLU GLU SEQRES 24 A 337 GLY LEU ASN LYS ALA ILE HIS TYR PHE ARG LYS GLU LEU SEQRES 25 A 337 GLU TYR GLN ALA ASN ASN GLN TYR ILE PRO LYS PRO LYS SEQRES 26 A 337 PRO ALA ARG ILE LYS LYS GLY ARG THR ARG HIS SER SEQRES 1 B 337 MET GLU LYS ASP ARG LYS ARG ILE LEU ILE THR GLY GLY SEQRES 2 B 337 ALA GLY PHE VAL GLY SER HIS LEU THR ASP LYS LEU MET SEQRES 3 B 337 MET ASP GLY HIS GLU VAL THR VAL VAL ASP ASN PHE PHE SEQRES 4 B 337 THR GLY ARG LYS ARG ASN VAL GLU HIS TRP ILE GLY HIS SEQRES 5 B 337 GLU ASN PHE GLU LEU ILE ASN HIS ASP VAL VAL GLU PRO SEQRES 6 B 337 LEU TYR ILE GLU VAL ASP GLN ILE TYR HIS LEU ALA SER SEQRES 7 B 337 PRO ALA SER PRO PRO ASN TYR MET TYR ASN PRO ILE LYS SEQRES 8 B 337 THR LEU LYS THR ASN THR ILE GLY THR LEU ASN MET LEU SEQRES 9 B 337 GLY LEU ALA LYS ARG VAL GLY ALA ARG LEU LEU LEU ALA SEQRES 10 B 337 SER THR SER GLU VAL TYR GLY ASP PRO GLU VAL HIS PRO SEQRES 11 B 337 GLN SER GLU ASP TYR TRP GLY HIS VAL ASN PRO ILE GLY SEQRES 12 B 337 PRO ARG ALA CYS TYR ASP GLU GLY LYS ARG VAL ALA GLU SEQRES 13 B 337 THR MET CYS TYR ALA TYR MET LYS GLN GLU GLY VAL GLU SEQRES 14 B 337 VAL ARG VAL ALA ARG ILE PHE ASN THR PHE GLY PRO ARG SEQRES 15 B 337 MET HIS MET ASN ASP GLY ARG VAL VAL SER ASN PHE ILE SEQRES 16 B 337 LEU GLN ALA LEU GLN GLY GLU PRO LEU THR VAL TYR GLY SEQRES 17 B 337 SER GLY SER GLN THR ARG ALA PHE GLN TYR VAL SER ASP SEQRES 18 B 337 LEU VAL ASN GLY LEU VAL ALA LEU MET ASN SER ASN VAL SEQRES 19 B 337 SER SER PRO VAL ASN LEU GLY ASN PRO GLU GLU HIS THR SEQRES 20 B 337 ILE LEU GLU PHE ALA GLN LEU ILE LYS ASN LEU VAL GLY SEQRES 21 B 337 SER GLY SER GLU ILE GLN PHE LEU SER GLU ALA GLN ASP SEQRES 22 B 337 ASP PRO GLN LYS ARG LYS PRO ASP ILE LYS LYS ALA LYS SEQRES 23 B 337 LEU MET LEU GLY TRP GLU PRO VAL VAL PRO LEU GLU GLU SEQRES 24 B 337 GLY LEU ASN LYS ALA ILE HIS TYR PHE ARG LYS GLU LEU SEQRES 25 B 337 GLU TYR GLN ALA ASN ASN GLN TYR ILE PRO LYS PRO LYS SEQRES 26 B 337 PRO ALA ARG ILE LYS LYS GLY ARG THR ARG HIS SER HET NAD A 800 44 HET GAI A 801 4 HET SO4 A 802 5 HET NAD B 501 44 HET GAI B 502 4 HET SO4 B 503 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GAI GUANIDINE HETNAM SO4 SULFATE ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 GAI 2(C H5 N3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *136(H2 O) HELIX 1 1 GLY A 98 ASP A 111 1 14 HELIX 2 2 ARG A 125 ILE A 133 5 9 HELIX 3 3 SER A 164 ASN A 171 1 8 HELIX 4 4 ASN A 171 GLY A 194 1 24 HELIX 5 5 GLU A 204 GLY A 207 5 4 HELIX 6 6 ARG A 228 GLY A 250 1 23 HELIX 7 7 ARG A 272 GLN A 283 1 12 HELIX 8 8 VAL A 302 ASN A 314 1 13 HELIX 9 9 ILE A 331 GLY A 343 1 13 HELIX 10 10 ILE A 365 GLY A 373 1 9 HELIX 11 11 PRO A 379 LYS A 393 1 15 HELIX 12 12 GLY B 98 ASP B 111 1 14 HELIX 13 13 ARG B 125 ILE B 133 5 9 HELIX 14 14 PRO B 172 THR B 180 1 9 HELIX 15 15 THR B 180 GLY B 194 1 15 HELIX 16 16 GLU B 204 GLY B 207 5 4 HELIX 17 17 ARG B 228 GLY B 250 1 23 HELIX 18 18 ARG B 272 GLN B 283 1 12 HELIX 19 19 VAL B 302 ASN B 314 1 13 HELIX 20 20 ILE B 331 GLY B 343 1 13 HELIX 21 21 ILE B 365 GLY B 373 1 9 HELIX 22 22 PRO B 379 GLU B 396 1 18 SHEET 1 A 7 PHE A 138 ASN A 142 0 SHEET 2 A 7 GLU A 114 ASP A 119 1 N VAL A 117 O ILE A 141 SHEET 3 A 7 ARG A 90 THR A 94 1 N ILE A 91 O THR A 116 SHEET 4 A 7 GLN A 155 HIS A 158 1 O TYR A 157 N LEU A 92 SHEET 5 A 7 ARG A 196 THR A 202 1 O ARG A 196 N ILE A 156 SHEET 6 A 7 GLU A 252 ILE A 258 1 O ARG A 254 N LEU A 199 SHEET 7 A 7 VAL A 321 LEU A 323 1 O LEU A 323 N ARG A 257 SHEET 1 B 2 THR A 261 PHE A 262 0 SHEET 2 B 2 GLN A 300 TYR A 301 1 O GLN A 300 N PHE A 262 SHEET 1 C 2 LEU A 287 TYR A 290 0 SHEET 2 C 2 ILE A 348 LEU A 351 1 O GLN A 349 N VAL A 289 SHEET 1 D 2 THR A 296 ARG A 297 0 SHEET 2 D 2 HIS A 329 THR A 330 -1 O HIS A 329 N ARG A 297 SHEET 1 E 7 PHE B 138 ASN B 142 0 SHEET 2 E 7 GLU B 114 ASP B 119 1 N VAL B 117 O ILE B 141 SHEET 3 E 7 ARG B 90 THR B 94 1 N ILE B 91 O GLU B 114 SHEET 4 E 7 GLN B 155 HIS B 158 1 O GLN B 155 N LEU B 92 SHEET 5 E 7 ARG B 196 THR B 202 1 O LEU B 198 N HIS B 158 SHEET 6 E 7 VAL B 253 ILE B 258 1 O ARG B 254 N LEU B 199 SHEET 7 E 7 VAL B 321 LEU B 323 1 O VAL B 321 N ARG B 257 SHEET 1 F 2 THR B 261 PHE B 262 0 SHEET 2 F 2 GLN B 300 TYR B 301 1 O GLN B 300 N PHE B 262 SHEET 1 G 2 LEU B 287 TYR B 290 0 SHEET 2 G 2 ILE B 348 LEU B 351 1 O GLN B 349 N VAL B 289 SHEET 1 H 2 THR B 296 ARG B 297 0 SHEET 2 H 2 HIS B 329 THR B 330 -1 O HIS B 329 N ARG B 297 CISPEP 1 HIS A 212 PRO A 213 0 -5.98 CISPEP 2 SER B 164 PRO B 165 0 -1.38 CISPEP 3 HIS B 212 PRO B 213 0 -10.61 SITE 1 AC1 26 GLY A 95 ALA A 97 GLY A 98 PHE A 99 SITE 2 AC1 26 VAL A 100 ASP A 119 ASN A 120 PHE A 121 SITE 3 AC1 26 PHE A 122 THR A 123 GLY A 124 HIS A 143 SITE 4 AC1 26 ASP A 144 VAL A 145 LEU A 159 ALA A 160 SITE 5 AC1 26 SER A 161 ALA A 163 THR A 178 SER A 201 SITE 6 AC1 26 TYR A 231 LYS A 235 ILE A 258 THR A 261 SITE 7 AC1 26 HIS A 267 HOH A 940 SITE 1 AC2 4 THR A 288 TYR A 290 ILE A 331 ASP A 356 SITE 1 AC3 5 SER A 203 PHE A 259 ASN A 260 GLN A 359 SITE 2 AC3 5 ARG A 361 SITE 1 AC4 31 GLY B 95 GLY B 98 PHE B 99 VAL B 100 SITE 2 AC4 31 ASP B 119 ASN B 120 PHE B 121 PHE B 122 SITE 3 AC4 31 THR B 123 GLY B 124 HIS B 143 ASP B 144 SITE 4 AC4 31 VAL B 145 LEU B 159 ALA B 160 SER B 161 SITE 5 AC4 31 PRO B 162 ALA B 163 LYS B 174 THR B 178 SITE 6 AC4 31 ALA B 200 THR B 202 TYR B 231 LYS B 235 SITE 7 AC4 31 ILE B 258 PHE B 259 ASN B 260 THR B 261 SITE 8 AC4 31 HIS B 267 ARG B 272 HOH B 608 SITE 1 AC5 3 THR B 288 TYR B 290 ASP B 356 SITE 1 AC6 7 TYR B 150 ARG B 192 TYR B 290 SER B 292 SITE 2 AC6 7 GLY B 293 SER B 294 GLN B 295 CRYST1 125.610 125.610 98.920 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007961 0.004596 0.000000 0.00000 SCALE2 0.000000 0.009193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010109 0.00000