HEADER SIGNALING PROTEIN 14-AUG-12 4GLQ TITLE CRYSTAL STRUCTURE OF THE BLUE-LIGHT ABSORBING FORM OF THE TITLE 2 THERMOSYNECHOCOCCUS ELONGATUS PIXJ GAF-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLL0569; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD-MYC-HIS KEYWDS CHROMOPHORE, PHYTOCHROME, CYANOBACTERIOCHROME, PHYCOVIOLOBILIN, KEYWDS 2 BILIN, BILI-PROTEIN, CATION-PI INTERACTION, SIGNALING PROTEIN, GAF KEYWDS 3 DOMAIN, PHOTORECEPTOR, PHYCOVIOLOBILIN ADDUCT EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,J.M.WALKER,G.N.PHILLIPS JR.,R.D.VIERSTRA REVDAT 8 03-APR-24 4GLQ 1 REMARK REVDAT 7 13-MAR-24 4GLQ 1 SOURCE REVDAT 6 23-SEP-20 4GLQ 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 HETSYN LINK REVDAT 5 15-NOV-17 4GLQ 1 AUTHOR JRNL REMARK REVDAT 4 15-MAY-13 4GLQ 1 HETATM HETNAM REVDAT 3 13-FEB-13 4GLQ 1 JRNL REVDAT 2 06-FEB-13 4GLQ 1 JRNL REVDAT 1 16-JAN-13 4GLQ 0 JRNL AUTH E.S.BURGIE,J.M.WALKER,G.N.PHILLIPS JR.,R.D.VIERSTRA JRNL TITL A PHOTO-LABILE THIOETHER LINKAGE TO PHYCOVIOLOBILIN PROVIDES JRNL TITL 2 THE FOUNDATION FOR THE BLUE/GREEN PHOTOCYCLES IN JRNL TITL 3 DXCF-CYANOBACTERIOCHROMES. JRNL REF STRUCTURE V. 21 88 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23219880 JRNL DOI 10.1016/J.STR.2012.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0812 - 3.8166 1.00 1443 161 0.1559 0.1916 REMARK 3 2 3.8166 - 3.0295 1.00 1333 148 0.1421 0.1910 REMARK 3 3 3.0295 - 2.6466 1.00 1312 146 0.1700 0.1986 REMARK 3 4 2.6466 - 2.4047 1.00 1299 144 0.1707 0.2091 REMARK 3 5 2.4047 - 2.2323 1.00 1270 142 0.1566 0.2203 REMARK 3 6 2.2323 - 2.1007 1.00 1282 141 0.1413 0.1905 REMARK 3 7 2.1007 - 1.9955 0.99 1270 143 0.1456 0.2078 REMARK 3 8 1.9955 - 1.9086 0.99 1257 140 0.1460 0.1876 REMARK 3 9 1.9086 - 1.8352 0.97 1227 136 0.1587 0.2188 REMARK 3 10 1.8352 - 1.7718 0.96 1206 136 0.1646 0.2259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1349 REMARK 3 ANGLE : 1.264 1851 REMARK 3 CHIRALITY : 0.083 200 REMARK 3 PLANARITY : 0.005 244 REMARK 3 DIHEDRAL : 17.122 530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 436:455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1600 84.2099 126.2912 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.3010 REMARK 3 T33: 0.2643 T12: 0.0161 REMARK 3 T13: 0.0222 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 7.8570 L22: 9.0173 REMARK 3 L33: 3.4624 L12: 3.9583 REMARK 3 L13: 2.3360 L23: 1.5739 REMARK 3 S TENSOR REMARK 3 S11: -0.3178 S12: 0.4678 S13: 0.4159 REMARK 3 S21: -0.1543 S22: 0.2222 S23: -0.4498 REMARK 3 S31: -0.3079 S32: 0.3809 S33: 0.0356 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 456:478 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3703 87.3786 135.7801 REMARK 3 T TENSOR REMARK 3 T11: 0.2349 T22: 0.2307 REMARK 3 T33: 0.2753 T12: 0.0122 REMARK 3 T13: 0.0029 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.5516 L22: 1.8312 REMARK 3 L33: 5.1550 L12: 0.5167 REMARK 3 L13: 1.3800 L23: 1.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.0606 S13: 0.1649 REMARK 3 S21: 0.0372 S22: 0.0283 S23: -0.0772 REMARK 3 S31: -0.0768 S32: -0.0031 S33: -0.0410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 479:493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1060 91.5712 131.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.2826 REMARK 3 T33: 0.2820 T12: 0.0088 REMARK 3 T13: -0.0098 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.4129 L22: 1.4157 REMARK 3 L33: 6.3018 L12: 0.1594 REMARK 3 L13: 2.4395 L23: 0.8357 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: 0.1222 S13: 0.0843 REMARK 3 S21: -0.1924 S22: 0.1019 S23: 0.0584 REMARK 3 S31: -0.4454 S32: -0.2105 S33: -0.0639 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 494:520 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9167 77.5165 143.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.2529 REMARK 3 T33: 0.2658 T12: -0.0117 REMARK 3 T13: 0.0094 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.9588 L22: 1.4598 REMARK 3 L33: 2.4412 L12: 0.1923 REMARK 3 L13: 1.8132 L23: 1.2337 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: -0.0826 S13: -0.0722 REMARK 3 S21: 0.1202 S22: -0.0329 S23: 0.0208 REMARK 3 S31: 0.1811 S32: -0.0428 S33: -0.0902 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 521:530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3910 87.9134 140.5653 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.3777 REMARK 3 T33: 0.4023 T12: 0.0585 REMARK 3 T13: -0.0030 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: 5.6059 REMARK 3 L33: 5.6599 L12: -0.0843 REMARK 3 L13: 0.0903 L23: -5.6320 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.2086 S13: 0.5309 REMARK 3 S21: 0.3258 S22: 0.0772 S23: 0.1139 REMARK 3 S31: -0.8086 S32: -0.8152 S33: -0.1026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 531:562 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7897 78.9892 134.2904 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2022 REMARK 3 T33: 0.2100 T12: 0.0159 REMARK 3 T13: 0.0240 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.8182 L22: 2.9531 REMARK 3 L33: 3.2404 L12: 2.7270 REMARK 3 L13: 1.4681 L23: 1.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 0.2292 S13: 0.0271 REMARK 3 S21: 0.0206 S22: 0.0364 S23: 0.0478 REMARK 3 S31: 0.1332 S32: 0.0884 S33: -0.0884 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 563:584 OR RESID 1000:1000 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1725 75.3256 133.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.2519 REMARK 3 T33: 0.2220 T12: 0.0222 REMARK 3 T13: -0.0118 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.8181 L22: 1.5592 REMARK 3 L33: 2.3222 L12: -0.1463 REMARK 3 L13: -1.4037 L23: 0.7016 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0989 S13: 0.0335 REMARK 3 S21: -0.0247 S22: 0.1090 S23: -0.1022 REMARK 3 S31: 0.0840 S32: 0.2444 S33: -0.0839 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.0 REMARK 200 STARTING MODEL: SYB CPH1-GAF DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NACL, 0.3 MM TRIS(2 REMARK 280 -CARBOXYETHYL)PHOSPHINE, 10 MM HEPES-NAOH (PH 7.8), 25% REMARK 280 POLYETHYLENE GLYCOL 3350, 200 MM SODIUM CHLORIDE, 40 MM GLYCINE, REMARK 280 100 MM BIS-TRIS-HCL, (PH 5.5), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.98300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.52000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.49150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.52000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.47450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.52000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.49150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.52000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.47450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.98300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -47.04000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 47.04000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 251.93200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 429 REMARK 465 ALA A 430 REMARK 465 ALA A 431 REMARK 465 VAL A 432 REMARK 465 GLN A 433 REMARK 465 LEU A 434 REMARK 465 SER A 435 REMARK 465 PHE A 585 REMARK 465 LEU A 586 REMARK 465 GLU A 587 REMARK 465 GLN A 588 REMARK 465 THR A 589 REMARK 465 ILE A 590 REMARK 465 ALA A 591 REMARK 465 SER A 592 REMARK 465 LEU A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 HIS A 597 REMARK 465 HIS A 598 REMARK 465 HIS A 599 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 582 O HOH A 1232 2.15 REMARK 500 O HOH A 1145 O HOH A 1158 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 564 CD1 ILE A 564 7467 1.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 487 -2.26 75.00 REMARK 500 SER A 556 -0.25 65.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VRB A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FOF RELATED DB: PDB REMARK 900 TE-PIXJ GAF DOMAIN DBREF 4GLQ A 430 591 UNP Q8DLC7 Q8DLC7_THEEB 430 591 SEQADV 4GLQ MET A 429 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ ALA A 555 UNP Q8DLC7 CYS 555 ENGINEERED MUTATION SEQADV 4GLQ SER A 592 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ LEU A 593 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 594 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 595 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 596 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 597 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 598 UNP Q8DLC7 EXPRESSION TAG SEQADV 4GLQ HIS A 599 UNP Q8DLC7 EXPRESSION TAG SEQRES 1 A 171 MET ALA ALA VAL GLN LEU SER GLU LEU ARG ASP ARG GLN SEQRES 2 A 171 ALA ILE PHE GLU THR LEU VAL ALA LYS GLY ARG GLU LEU SEQRES 3 A 171 LEU ALA CYS ASP ARG VAL ILE VAL TYR ALA PHE ASP ASP SEQRES 4 A 171 ASN TYR VAL GLY THR VAL VAL ALA GLU SER VAL ALA GLU SEQRES 5 A 171 GLY TRP PRO GLN ALA ARG ASP GLN VAL ILE GLU ASP PRO SEQRES 6 A 171 CYS PHE ARG GLU HIS TRP VAL GLU ALA TYR ARG GLN GLY SEQRES 7 A 171 ARG ILE GLN ALA THR THR ASP ILE PHE LYS ALA GLY LEU SEQRES 8 A 171 THR GLU CYS HIS LEU ASN GLN LEU ARG PRO LEU LYS VAL SEQRES 9 A 171 ARG ALA ASN LEU VAL VAL PRO MET VAL ILE ASP ASP GLN SEQRES 10 A 171 LEU PHE GLY LEU LEU ILE ALA HIS GLN ALA SER GLU PRO SEQRES 11 A 171 ARG GLN TRP GLN GLU ILE GLU ILE ASP GLN PHE SER GLU SEQRES 12 A 171 LEU ALA SER THR GLY SER LEU VAL LEU GLU ARG LEU HIS SEQRES 13 A 171 PHE LEU GLU GLN THR ILE ALA SER LEU HIS HIS HIS HIS SEQRES 14 A 171 HIS HIS HET VRB A1000 43 HETNAM VRB PHYCOVIOLOBILIN, BLUE LIGHT-ABSORBING FORM HETSYN VRB 3-[5-[(3-ETHYL-4-METHYL-5-OXIDANYLIDENE-1,2- HETSYN 2 VRB DIHYDROPYRROL-2-YL)METHYL]-2-[[5-[(Z)-(4-ETHYL-3- HETSYN 3 VRB METHYL-5-OXIDANYLIDENE-PYR ROL-2-YLIDENE)METHYL]-3-(3- HETSYN 4 VRB HYDROXY-3-OXOPROPYL)-4-METHYL-1H-PYRROL-2-YL]METHYL]- HETSYN 5 VRB 4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID FORMUL 2 VRB C33 H42 N4 O6 FORMUL 3 HOH *137(H2 O) HELIX 1 1 ARG A 438 ALA A 456 1 19 HELIX 2 2 PRO A 493 TRP A 499 1 7 HELIX 3 3 TRP A 499 GLN A 505 1 7 HELIX 4 4 ASP A 513 ALA A 517 5 5 HELIX 5 5 THR A 520 ARG A 528 1 9 HELIX 6 6 GLN A 562 HIS A 584 1 23 SHEET 1 A 6 VAL A 489 ILE A 490 0 SHEET 2 A 6 GLY A 471 VAL A 478 -1 N GLY A 471 O ILE A 490 SHEET 3 A 6 ARG A 459 PHE A 465 -1 N ALA A 464 O THR A 472 SHEET 4 A 6 GLN A 545 ALA A 555 -1 O LEU A 549 N TYR A 463 SHEET 5 A 6 VAL A 532 ILE A 542 -1 N ALA A 534 O GLN A 554 SHEET 6 A 6 GLN A 509 THR A 511 -1 N THR A 511 O ASN A 535 LINK SG CYS A 494 C16 VRB A1000 1555 1555 1.81 LINK SG CYS A 522 C02 VRB A1000 1555 1555 1.81 SITE 1 AC1 23 ASP A 492 PRO A 493 CYS A 494 PHE A 495 SITE 2 AC1 23 HIS A 498 TRP A 499 TYR A 503 ARG A 507 SITE 3 AC1 23 GLN A 509 CYS A 522 HIS A 523 LEU A 527 SITE 4 AC1 23 LEU A 530 ASN A 535 ILE A 551 HIS A 553 SITE 5 AC1 23 GLU A 563 ILE A 566 ASP A 567 HOH A1126 SITE 6 AC1 23 HOH A1147 HOH A1148 HOH A1205 CRYST1 47.040 47.040 125.966 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007939 0.00000