HEADER TRANSFERASE/INHIBITOR 15-AUG-12 4GMD TITLE THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PAO1 IN COMPLEX WITH AZT MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA2962, TMK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY KEYWDS 3 TO KNOWN MTB INHIBITORS, MTBI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,G.JOACHIMIAK,R.JEDRZEJCZAK,J.SACCHETTINI,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS AUTHOR 3 CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 2 13-SEP-23 4GMD 1 REMARK SEQADV LINK REVDAT 1 29-AUG-12 4GMD 0 JRNL AUTH K.TAN,G.JOACHIMIAK,R.JEDRZEJCZAK,J.SACCHETTINI,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA PAO1 IN COMPLEX WITH AZT MONOPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0418 - 5.3673 0.99 2624 132 0.1696 0.2143 REMARK 3 2 5.3673 - 4.2628 1.00 2605 149 0.1355 0.1437 REMARK 3 3 4.2628 - 3.7247 1.00 2570 140 0.1465 0.1940 REMARK 3 4 3.7247 - 3.3845 1.00 2594 148 0.1670 0.2181 REMARK 3 5 3.3845 - 3.1421 1.00 2587 145 0.1837 0.2346 REMARK 3 6 3.1421 - 2.9570 1.00 2576 135 0.1937 0.2669 REMARK 3 7 2.9570 - 2.8089 1.00 2606 132 0.2071 0.2618 REMARK 3 8 2.8089 - 2.6867 1.00 2629 143 0.2052 0.2621 REMARK 3 9 2.6867 - 2.5833 1.00 2547 142 0.2087 0.2490 REMARK 3 10 2.5833 - 2.4942 1.00 2579 136 0.1964 0.2669 REMARK 3 11 2.4942 - 2.4162 1.00 2612 129 0.1996 0.2686 REMARK 3 12 2.4162 - 2.3472 1.00 2541 154 0.1977 0.2875 REMARK 3 13 2.3472 - 2.2854 1.00 2617 134 0.1901 0.2706 REMARK 3 14 2.2854 - 2.2297 1.00 2567 136 0.1883 0.2337 REMARK 3 15 2.2297 - 2.1790 1.00 2582 149 0.1999 0.2758 REMARK 3 16 2.1790 - 2.1326 1.00 2597 134 0.2063 0.2852 REMARK 3 17 2.1326 - 2.0900 1.00 2594 118 0.2079 0.3073 REMARK 3 18 2.0900 - 2.0505 1.00 2563 138 0.2212 0.2354 REMARK 3 19 2.0505 - 2.0139 1.00 2561 142 0.2152 0.2912 REMARK 3 20 2.0139 - 1.9798 0.98 2596 131 0.2336 0.2925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 35.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.73970 REMARK 3 B22 (A**2) : -8.03500 REMARK 3 B33 (A**2) : 0.29530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.41820 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6379 REMARK 3 ANGLE : 1.002 8643 REMARK 3 CHIRALITY : 0.065 965 REMARK 3 PLANARITY : 0.005 1155 REMARK 3 DIHEDRAL : 14.036 2428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 29 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:30) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4043 -54.3839 15.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.5039 T22: 0.3891 REMARK 3 T33: 0.3349 T12: 0.0492 REMARK 3 T13: 0.0122 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.1222 L22: 5.1840 REMARK 3 L33: 1.9624 L12: -0.3587 REMARK 3 L13: 1.3868 L23: 0.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: -0.4428 S13: -0.0865 REMARK 3 S21: 0.0667 S22: 0.2406 S23: 0.2332 REMARK 3 S31: 0.0216 S32: -0.2480 S33: -0.1005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 31:136) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3806 -39.5276 23.2638 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.2589 REMARK 3 T33: 0.2741 T12: 0.0271 REMARK 3 T13: 0.0019 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.5698 L22: 2.8315 REMARK 3 L33: 1.5364 L12: 0.1276 REMARK 3 L13: 0.2692 L23: 0.3957 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.0245 S13: -0.0489 REMARK 3 S21: -0.3743 S22: -0.0381 S23: 0.0428 REMARK 3 S31: 0.0464 S32: 0.0275 S33: 0.0202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 137:159) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2117 -43.6498 30.5451 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.6377 REMARK 3 T33: 0.8444 T12: -0.0587 REMARK 3 T13: -0.0038 T23: 0.1331 REMARK 3 L TENSOR REMARK 3 L11: 1.7416 L22: 0.5307 REMARK 3 L33: 6.9073 L12: -0.9352 REMARK 3 L13: 0.6310 L23: -0.8187 REMARK 3 S TENSOR REMARK 3 S11: 0.4004 S12: -0.7654 S13: -0.7635 REMARK 3 S21: 0.1806 S22: -0.1010 S23: 0.5190 REMARK 3 S31: 0.3933 S32: -1.1774 S33: -0.1810 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 160:177) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9236 -37.0251 16.8532 REMARK 3 T TENSOR REMARK 3 T11: 0.5182 T22: 0.3771 REMARK 3 T33: 0.4322 T12: 0.1885 REMARK 3 T13: -0.2656 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.4791 L22: 3.9768 REMARK 3 L33: 7.0718 L12: -0.3783 REMARK 3 L13: -1.3729 L23: 1.3469 REMARK 3 S TENSOR REMARK 3 S11: 0.5776 S12: 0.4149 S13: 0.1869 REMARK 3 S21: -0.6647 S22: -0.2327 S23: 0.9845 REMARK 3 S31: -0.5165 S32: -0.9463 S33: 0.0513 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 178:209) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9372 -51.8960 7.2641 REMARK 3 T TENSOR REMARK 3 T11: 0.8934 T22: 0.4159 REMARK 3 T33: 0.4420 T12: 0.1289 REMARK 3 T13: -0.0841 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.3835 L22: 5.1236 REMARK 3 L33: 2.4649 L12: -1.2122 REMARK 3 L13: 0.6164 L23: 0.4468 REMARK 3 S TENSOR REMARK 3 S11: 0.4258 S12: 0.2927 S13: -0.0009 REMARK 3 S21: -1.7739 S22: -0.2720 S23: 0.5078 REMARK 3 S31: -0.2713 S32: 0.2333 S33: 0.0211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 2:15) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1612 -29.5194 -5.3736 REMARK 3 T TENSOR REMARK 3 T11: 0.3248 T22: 0.3788 REMARK 3 T33: 0.3481 T12: 0.0452 REMARK 3 T13: -0.0059 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 6.9183 L22: 3.5001 REMARK 3 L33: 3.8871 L12: 1.0793 REMARK 3 L13: 1.3644 L23: 1.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.3930 S12: 0.7080 S13: 0.0290 REMARK 3 S21: 0.2132 S22: 0.4324 S23: -0.2511 REMARK 3 S31: -0.1074 S32: 0.3893 S33: -0.0087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 16:30) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4863 -33.6658 -16.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.4825 T22: 0.3295 REMARK 3 T33: 0.3981 T12: 0.0471 REMARK 3 T13: 0.0467 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.0456 L22: 6.0441 REMARK 3 L33: 2.1055 L12: 3.5006 REMARK 3 L13: 1.6759 L23: 1.9801 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.1159 S13: -0.5416 REMARK 3 S21: -0.2548 S22: 0.1917 S23: -0.8534 REMARK 3 S31: -0.2546 S32: 0.2569 S33: -0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 31:62) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5431 -14.7693 -4.2889 REMARK 3 T TENSOR REMARK 3 T11: 0.4025 T22: 0.3624 REMARK 3 T33: 0.3557 T12: 0.1004 REMARK 3 T13: 0.0793 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.7707 L22: 2.7345 REMARK 3 L33: 3.0360 L12: 0.2687 REMARK 3 L13: 0.2835 L23: 1.8205 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.1871 S13: -0.0281 REMARK 3 S21: -0.6867 S22: 0.0584 S23: -0.4809 REMARK 3 S31: -0.3452 S32: 0.2789 S33: -0.0077 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 63:112) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4692 -22.1300 1.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.3510 REMARK 3 T33: 0.2772 T12: 0.0715 REMARK 3 T13: 0.0198 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.8173 L22: 1.6117 REMARK 3 L33: 0.7095 L12: 0.1558 REMARK 3 L13: -0.1685 L23: 0.5577 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.1477 S13: -0.1561 REMARK 3 S21: -0.1356 S22: -0.0649 S23: -0.0470 REMARK 3 S31: 0.0230 S32: 0.0042 S33: -0.0223 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 113:136) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0411 -28.1575 6.1517 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.3120 REMARK 3 T33: 0.3528 T12: 0.0493 REMARK 3 T13: 0.0262 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.4114 L22: 2.0250 REMARK 3 L33: 2.3651 L12: -0.2362 REMARK 3 L13: 0.5180 L23: 0.8573 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.0813 S13: -0.1079 REMARK 3 S21: 0.3221 S22: 0.0146 S23: 0.0082 REMARK 3 S31: 0.4306 S32: -0.0034 S33: -0.0972 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 137:159) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8837 -16.6664 -0.6161 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.7265 REMARK 3 T33: 0.9270 T12: -0.1150 REMARK 3 T13: 0.1467 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 0.9541 L22: 0.9878 REMARK 3 L33: 1.6934 L12: -0.5580 REMARK 3 L13: -0.7444 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.9393 S13: 1.2489 REMARK 3 S21: 0.0500 S22: -0.0174 S23: -0.3757 REMARK 3 S31: -0.4528 S32: -0.0007 S33: -0.1838 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 160:176) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1124 -26.9152 5.8513 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.5299 REMARK 3 T33: 0.4845 T12: 0.1133 REMARK 3 T13: -0.0257 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.0651 L22: 6.2828 REMARK 3 L33: 2.1676 L12: 2.6415 REMARK 3 L13: -0.1357 L23: 0.5766 REMARK 3 S TENSOR REMARK 3 S11: 0.3904 S12: -0.3733 S13: 0.2465 REMARK 3 S21: 0.5633 S22: -0.3833 S23: -0.5314 REMARK 3 S31: 0.1954 S32: 0.7863 S33: 0.0379 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 177:189) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6947 -36.9787 -1.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.4556 REMARK 3 T33: 0.4663 T12: 0.0764 REMARK 3 T13: -0.0073 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 5.1385 L22: 3.7581 REMARK 3 L33: 6.5753 L12: 0.4230 REMARK 3 L13: -2.5976 L23: -0.1402 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: 0.0415 S13: -0.6070 REMARK 3 S21: 0.2752 S22: 0.0976 S23: -0.2215 REMARK 3 S31: 0.3002 S32: -0.1375 S33: -0.3945 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 190:208) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8865 -41.3401 -10.4955 REMARK 3 T TENSOR REMARK 3 T11: 0.7768 T22: 0.3963 REMARK 3 T33: 0.5789 T12: 0.1677 REMARK 3 T13: -0.1405 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 7.7775 L22: 4.3404 REMARK 3 L33: 6.4304 L12: 0.2404 REMARK 3 L13: 2.0492 L23: 0.7280 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: -0.0596 S13: -0.3503 REMARK 3 S21: 1.1391 S22: 0.6124 S23: -0.2410 REMARK 3 S31: 1.3146 S32: 0.6735 S33: -0.7694 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 2:15) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1263 -14.8012 44.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.4620 T22: 0.2982 REMARK 3 T33: 0.2465 T12: -0.0804 REMARK 3 T13: -0.0591 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 5.6847 L22: 1.9851 REMARK 3 L33: 3.5847 L12: -0.2138 REMARK 3 L13: 1.1138 L23: 0.3293 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.4304 S13: -0.3703 REMARK 3 S21: 0.1776 S22: 0.1393 S23: -0.1609 REMARK 3 S31: -0.1953 S32: -0.2407 S33: 0.0243 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 16:30) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0699 -10.1121 54.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.5621 T22: 0.4384 REMARK 3 T33: 0.3601 T12: 0.0036 REMARK 3 T13: -0.0180 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.1667 L22: 5.4038 REMARK 3 L33: 1.0507 L12: -3.6551 REMARK 3 L13: -1.0343 L23: 1.4835 REMARK 3 S TENSOR REMARK 3 S11: -0.5521 S12: -0.4163 S13: -0.2362 REMARK 3 S21: 1.1977 S22: 0.3708 S23: 0.0950 REMARK 3 S31: 0.0903 S32: 0.1533 S33: 0.1975 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 31:95) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8299 -25.5576 40.1985 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.2897 REMARK 3 T33: 0.2782 T12: -0.0065 REMARK 3 T13: -0.0259 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0434 L22: 2.3586 REMARK 3 L33: 1.5629 L12: -0.6664 REMARK 3 L13: 0.0159 L23: 0.3564 REMARK 3 S TENSOR REMARK 3 S11: -0.1166 S12: -0.0532 S13: -0.0082 REMARK 3 S21: 0.2274 S22: 0.0314 S23: -0.0725 REMARK 3 S31: 0.0058 S32: -0.0154 S33: 0.0874 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 96:136) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3471 -19.0817 32.8723 REMARK 3 T TENSOR REMARK 3 T11: 0.3216 T22: 0.3135 REMARK 3 T33: 0.3287 T12: 0.0050 REMARK 3 T13: -0.0254 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.4208 L22: 1.8664 REMARK 3 L33: 2.7305 L12: 0.1825 REMARK 3 L13: -0.5669 L23: 0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.0058 S13: 0.1499 REMARK 3 S21: -0.2358 S22: -0.1467 S23: -0.2176 REMARK 3 S31: -0.3768 S32: 0.3761 S33: 0.0907 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 137:159) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4264 -31.1377 43.5317 REMARK 3 T TENSOR REMARK 3 T11: 0.4493 T22: 0.7595 REMARK 3 T33: 0.7346 T12: -0.0507 REMARK 3 T13: -0.1481 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 3.5120 L22: 1.0853 REMARK 3 L33: 2.2164 L12: -0.0111 REMARK 3 L13: 0.9881 L23: 1.4479 REMARK 3 S TENSOR REMARK 3 S11: 0.3493 S12: -0.7356 S13: -0.2789 REMARK 3 S21: 0.6872 S22: -0.1035 S23: -0.7652 REMARK 3 S31: 0.0236 S32: 0.5805 S33: 0.2086 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 160:176) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3413 -18.7236 36.5274 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.7238 REMARK 3 T33: 0.5124 T12: -0.1173 REMARK 3 T13: -0.0701 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 2.9229 L22: 4.0008 REMARK 3 L33: 1.5931 L12: -1.7313 REMARK 3 L13: 0.6614 L23: 0.4527 REMARK 3 S TENSOR REMARK 3 S11: 0.0944 S12: 0.1322 S13: 0.1952 REMARK 3 S21: 0.0933 S22: -0.2763 S23: -0.8940 REMARK 3 S31: -0.1532 S32: 1.3184 S33: 0.0596 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 177:189) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1720 -8.0603 42.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.5176 T22: 0.5866 REMARK 3 T33: 0.4290 T12: -0.1226 REMARK 3 T13: -0.1013 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.2446 L22: 1.5481 REMARK 3 L33: 6.8706 L12: -0.4609 REMARK 3 L13: 3.1958 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.2869 S12: 0.0764 S13: 0.5090 REMARK 3 S21: -0.3710 S22: 0.0185 S23: -0.2075 REMARK 3 S31: -0.6276 S32: 0.4310 S33: 0.2063 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 190:209) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4660 -2.5814 49.2465 REMARK 3 T TENSOR REMARK 3 T11: 0.5285 T22: 0.4792 REMARK 3 T33: 0.5522 T12: -0.1006 REMARK 3 T13: 0.0502 T23: -0.1235 REMARK 3 L TENSOR REMARK 3 L11: 6.3701 L22: 2.8393 REMARK 3 L33: 3.7841 L12: -1.0713 REMARK 3 L13: 1.7320 L23: -0.8485 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: 0.2883 S13: 0.1982 REMARK 3 S21: -0.1317 S22: 0.2371 S23: -0.4811 REMARK 3 S31: -0.6429 S32: 0.4417 S33: -0.0145 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 2:30) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9967 10.7572 21.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.3480 T22: 0.3093 REMARK 3 T33: 0.3362 T12: -0.0086 REMARK 3 T13: 0.0298 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.3424 L22: 2.9128 REMARK 3 L33: 1.3994 L12: 0.6857 REMARK 3 L13: -0.0683 L23: 0.4350 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.1992 S13: 0.2532 REMARK 3 S21: -0.0527 S22: -0.1085 S23: 0.1900 REMARK 3 S31: 0.1828 S32: -0.1567 S33: 0.0361 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 31:95) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5135 -1.8755 10.6741 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.3074 REMARK 3 T33: 0.2955 T12: 0.0495 REMARK 3 T13: 0.0368 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.0178 L22: 2.3162 REMARK 3 L33: 1.4048 L12: 0.0225 REMARK 3 L13: -0.1228 L23: 1.4651 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.1588 S13: 0.0718 REMARK 3 S21: -0.3530 S22: -0.0239 S23: -0.0227 REMARK 3 S31: -0.3068 S32: 0.0089 S33: -0.0122 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 96:136) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8397 -7.9751 18.1653 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.2771 REMARK 3 T33: 0.2717 T12: 0.0275 REMARK 3 T13: 0.0452 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.0504 L22: 4.1476 REMARK 3 L33: 2.2129 L12: -0.6464 REMARK 3 L13: 0.0265 L23: -0.2216 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0187 S13: -0.0439 REMARK 3 S21: 0.2902 S22: 0.0110 S23: 0.2030 REMARK 3 S31: 0.1243 S32: 0.0349 S33: 0.0541 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 137:159) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2445 -1.0272 4.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.5882 REMARK 3 T33: 0.5841 T12: 0.0885 REMARK 3 T13: -0.0783 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.0229 L22: 2.2177 REMARK 3 L33: 2.6289 L12: -1.7940 REMARK 3 L13: -1.5581 L23: 0.6975 REMARK 3 S TENSOR REMARK 3 S11: 0.3408 S12: 0.8141 S13: 0.7677 REMARK 3 S21: -0.1205 S22: -0.6358 S23: 0.2687 REMARK 3 S31: -0.2932 S32: -1.0545 S33: 0.1587 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 160:176) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6927 -4.9286 17.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3960 REMARK 3 T33: 0.5868 T12: 0.0137 REMARK 3 T13: 0.0986 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.1490 L22: 3.3100 REMARK 3 L33: 9.7505 L12: -0.0599 REMARK 3 L13: 1.9020 L23: 1.7479 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.1422 S13: 0.3565 REMARK 3 S21: 0.1305 S22: -0.1553 S23: 1.1011 REMARK 3 S31: 0.4944 S32: -1.2622 S33: -0.0667 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 177:189) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9976 3.5405 26.0519 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4072 REMARK 3 T33: 0.3522 T12: 0.1495 REMARK 3 T13: 0.0639 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.8116 L22: 4.4218 REMARK 3 L33: 1.9510 L12: -2.1960 REMARK 3 L13: 1.4924 L23: -1.3143 REMARK 3 S TENSOR REMARK 3 S11: -0.4732 S12: -0.4977 S13: -0.0315 REMARK 3 S21: 0.5823 S22: 0.2007 S23: -0.1272 REMARK 3 S31: 0.1083 S32: -0.0457 S33: 0.1481 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 190:209) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4516 11.6234 30.1764 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.3279 REMARK 3 T33: 0.2681 T12: -0.0272 REMARK 3 T13: 0.0499 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 4.3897 L22: 3.7842 REMARK 3 L33: 3.5843 L12: -1.3338 REMARK 3 L13: 1.2152 L23: -1.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.2572 S12: -0.5569 S13: -0.0288 REMARK 3 S21: 0.3294 S22: 0.1549 S23: 0.1863 REMARK 3 S31: -0.2540 S32: -0.3662 S33: 0.1104 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4E5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1M TRIS:HCL, 20%(W/V) REMARK 280 PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.70200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B, C AND D MAY REMARK 300 FORM DIMERS, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LEU A 143 REMARK 465 ALA A 144 REMARK 465 ARG A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 GLY A 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ILE B 141 REMARK 465 GLY B 142 REMARK 465 LEU B 143 REMARK 465 ALA B 144 REMARK 465 ARG B 145 REMARK 465 ALA B 146 REMARK 465 ALA B 147 REMARK 465 ALA B 148 REMARK 465 ARG B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 LEU B 152 REMARK 465 ASN B 209 REMARK 465 GLY B 210 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 GLU C 140 REMARK 465 ILE C 141 REMARK 465 GLY C 142 REMARK 465 LEU C 143 REMARK 465 ALA C 144 REMARK 465 ARG C 145 REMARK 465 ALA C 146 REMARK 465 ALA C 147 REMARK 465 ALA C 148 REMARK 465 ARG C 149 REMARK 465 GLY C 150 REMARK 465 GLY C 210 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 GLU D 140 REMARK 465 ILE D 141 REMARK 465 GLY D 142 REMARK 465 LEU D 143 REMARK 465 ALA D 144 REMARK 465 ARG D 145 REMARK 465 ALA D 146 REMARK 465 ALA D 147 REMARK 465 ALA D 148 REMARK 465 ARG D 149 REMARK 465 GLY D 150 REMARK 465 ARG D 151 REMARK 465 GLY D 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 182 O2 GOL A 303 1.96 REMARK 500 O GLU A 179 NH1 ARG A 207 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 161 O ARG C 109 1455 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -55.36 -127.29 REMARK 500 ARG A 96 139.31 76.85 REMARK 500 PHE A 97 -149.33 -155.35 REMARK 500 VAL A 139 102.53 -58.44 REMARK 500 VAL B 81 -61.94 -134.87 REMARK 500 ARG B 96 133.15 73.77 REMARK 500 PHE B 97 -145.03 -145.84 REMARK 500 ARG B 207 -12.86 -43.70 REMARK 500 VAL C 81 -53.34 -126.23 REMARK 500 ARG C 96 136.05 79.73 REMARK 500 PHE C 97 -148.39 -152.84 REMARK 500 PRO C 138 152.03 -48.15 REMARK 500 VAL D 81 -56.97 -120.77 REMARK 500 ARG D 96 136.72 82.65 REMARK 500 PHE D 97 -145.54 -152.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 158 OE1 REMARK 620 2 ASP D 159 OD2 79.4 REMARK 620 3 HOH D 497 O 106.4 172.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E5U RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA PAO1 IN COMPLEX WITH THYMIDINE MONOPHOSPHATE REMARK 900 RELATED ID: 4EDH RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA PAO1 IN COMPLEX WITH ADP,TMP AND MG2+. REMARK 900 RELATED ID: 4ESH RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA PAO1 IN COMPLEX WITH DEOXYTHYMIDINE REMARK 900 RELATED ID: APC105732 RELATED DB: TARGETTRACK DBREF 4GMD A 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 DBREF 4GMD B 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 DBREF 4GMD C 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 DBREF 4GMD D 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 SEQADV 4GMD SER A -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ASN A -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ALA A 0 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD SER B -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ASN B -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ALA B 0 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD SER C -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ASN C -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ALA C 0 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD SER D -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ASN D -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 4GMD ALA D 0 UNP Q9HZN8 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA MET THR GLY LEU PHE VAL THR LEU GLU GLY SEQRES 2 A 213 PRO GLU GLY ALA GLY LYS SER THR ASN ARG ASP TYR LEU SEQRES 3 A 213 ALA GLU ARG LEU ARG GLU ARG GLY ILE GLU VAL GLN LEU SEQRES 4 A 213 THR ARG GLU PRO GLY GLY THR PRO LEU ALA GLU ARG ILE SEQRES 5 A 213 ARG GLU LEU LEU LEU ALA PRO SER ASP GLU PRO MET ALA SEQRES 6 A 213 ALA ASP THR GLU LEU LEU LEU MET PHE ALA ALA ARG ALA SEQRES 7 A 213 GLN HIS LEU ALA GLY VAL ILE ARG PRO ALA LEU ALA ARG SEQRES 8 A 213 GLY ALA VAL VAL LEU CYS ASP ARG PHE THR ASP ALA THR SEQRES 9 A 213 TYR ALA TYR GLN GLY GLY GLY ARG GLY LEU PRO GLU ALA SEQRES 10 A 213 ARG ILE ALA ALA LEU GLU SER PHE VAL GLN GLY ASP LEU SEQRES 11 A 213 ARG PRO ASP LEU THR LEU VAL PHE ASP LEU PRO VAL GLU SEQRES 12 A 213 ILE GLY LEU ALA ARG ALA ALA ALA ARG GLY ARG LEU ASP SEQRES 13 A 213 ARG PHE GLU GLN GLU ASP ARG ARG PHE PHE GLU ALA VAL SEQRES 14 A 213 ARG GLN THR TYR LEU GLN ARG ALA ALA GLN ALA PRO GLU SEQRES 15 A 213 ARG TYR GLN VAL LEU ASP ALA GLY LEU PRO LEU ALA GLU SEQRES 16 A 213 VAL GLN ALA GLY LEU ASP ARG LEU LEU PRO ASN LEU LEU SEQRES 17 A 213 GLU ARG LEU ASN GLY SEQRES 1 B 213 SER ASN ALA MET THR GLY LEU PHE VAL THR LEU GLU GLY SEQRES 2 B 213 PRO GLU GLY ALA GLY LYS SER THR ASN ARG ASP TYR LEU SEQRES 3 B 213 ALA GLU ARG LEU ARG GLU ARG GLY ILE GLU VAL GLN LEU SEQRES 4 B 213 THR ARG GLU PRO GLY GLY THR PRO LEU ALA GLU ARG ILE SEQRES 5 B 213 ARG GLU LEU LEU LEU ALA PRO SER ASP GLU PRO MET ALA SEQRES 6 B 213 ALA ASP THR GLU LEU LEU LEU MET PHE ALA ALA ARG ALA SEQRES 7 B 213 GLN HIS LEU ALA GLY VAL ILE ARG PRO ALA LEU ALA ARG SEQRES 8 B 213 GLY ALA VAL VAL LEU CYS ASP ARG PHE THR ASP ALA THR SEQRES 9 B 213 TYR ALA TYR GLN GLY GLY GLY ARG GLY LEU PRO GLU ALA SEQRES 10 B 213 ARG ILE ALA ALA LEU GLU SER PHE VAL GLN GLY ASP LEU SEQRES 11 B 213 ARG PRO ASP LEU THR LEU VAL PHE ASP LEU PRO VAL GLU SEQRES 12 B 213 ILE GLY LEU ALA ARG ALA ALA ALA ARG GLY ARG LEU ASP SEQRES 13 B 213 ARG PHE GLU GLN GLU ASP ARG ARG PHE PHE GLU ALA VAL SEQRES 14 B 213 ARG GLN THR TYR LEU GLN ARG ALA ALA GLN ALA PRO GLU SEQRES 15 B 213 ARG TYR GLN VAL LEU ASP ALA GLY LEU PRO LEU ALA GLU SEQRES 16 B 213 VAL GLN ALA GLY LEU ASP ARG LEU LEU PRO ASN LEU LEU SEQRES 17 B 213 GLU ARG LEU ASN GLY SEQRES 1 C 213 SER ASN ALA MET THR GLY LEU PHE VAL THR LEU GLU GLY SEQRES 2 C 213 PRO GLU GLY ALA GLY LYS SER THR ASN ARG ASP TYR LEU SEQRES 3 C 213 ALA GLU ARG LEU ARG GLU ARG GLY ILE GLU VAL GLN LEU SEQRES 4 C 213 THR ARG GLU PRO GLY GLY THR PRO LEU ALA GLU ARG ILE SEQRES 5 C 213 ARG GLU LEU LEU LEU ALA PRO SER ASP GLU PRO MET ALA SEQRES 6 C 213 ALA ASP THR GLU LEU LEU LEU MET PHE ALA ALA ARG ALA SEQRES 7 C 213 GLN HIS LEU ALA GLY VAL ILE ARG PRO ALA LEU ALA ARG SEQRES 8 C 213 GLY ALA VAL VAL LEU CYS ASP ARG PHE THR ASP ALA THR SEQRES 9 C 213 TYR ALA TYR GLN GLY GLY GLY ARG GLY LEU PRO GLU ALA SEQRES 10 C 213 ARG ILE ALA ALA LEU GLU SER PHE VAL GLN GLY ASP LEU SEQRES 11 C 213 ARG PRO ASP LEU THR LEU VAL PHE ASP LEU PRO VAL GLU SEQRES 12 C 213 ILE GLY LEU ALA ARG ALA ALA ALA ARG GLY ARG LEU ASP SEQRES 13 C 213 ARG PHE GLU GLN GLU ASP ARG ARG PHE PHE GLU ALA VAL SEQRES 14 C 213 ARG GLN THR TYR LEU GLN ARG ALA ALA GLN ALA PRO GLU SEQRES 15 C 213 ARG TYR GLN VAL LEU ASP ALA GLY LEU PRO LEU ALA GLU SEQRES 16 C 213 VAL GLN ALA GLY LEU ASP ARG LEU LEU PRO ASN LEU LEU SEQRES 17 C 213 GLU ARG LEU ASN GLY SEQRES 1 D 213 SER ASN ALA MET THR GLY LEU PHE VAL THR LEU GLU GLY SEQRES 2 D 213 PRO GLU GLY ALA GLY LYS SER THR ASN ARG ASP TYR LEU SEQRES 3 D 213 ALA GLU ARG LEU ARG GLU ARG GLY ILE GLU VAL GLN LEU SEQRES 4 D 213 THR ARG GLU PRO GLY GLY THR PRO LEU ALA GLU ARG ILE SEQRES 5 D 213 ARG GLU LEU LEU LEU ALA PRO SER ASP GLU PRO MET ALA SEQRES 6 D 213 ALA ASP THR GLU LEU LEU LEU MET PHE ALA ALA ARG ALA SEQRES 7 D 213 GLN HIS LEU ALA GLY VAL ILE ARG PRO ALA LEU ALA ARG SEQRES 8 D 213 GLY ALA VAL VAL LEU CYS ASP ARG PHE THR ASP ALA THR SEQRES 9 D 213 TYR ALA TYR GLN GLY GLY GLY ARG GLY LEU PRO GLU ALA SEQRES 10 D 213 ARG ILE ALA ALA LEU GLU SER PHE VAL GLN GLY ASP LEU SEQRES 11 D 213 ARG PRO ASP LEU THR LEU VAL PHE ASP LEU PRO VAL GLU SEQRES 12 D 213 ILE GLY LEU ALA ARG ALA ALA ALA ARG GLY ARG LEU ASP SEQRES 13 D 213 ARG PHE GLU GLN GLU ASP ARG ARG PHE PHE GLU ALA VAL SEQRES 14 D 213 ARG GLN THR TYR LEU GLN ARG ALA ALA GLN ALA PRO GLU SEQRES 15 D 213 ARG TYR GLN VAL LEU ASP ALA GLY LEU PRO LEU ALA GLU SEQRES 16 D 213 VAL GLN ALA GLY LEU ASP ARG LEU LEU PRO ASN LEU LEU SEQRES 17 D 213 GLU ARG LEU ASN GLY HET ATM A 301 23 HET CL A 302 1 HET GOL A 303 6 HET ATM B 301 23 HET CL B 302 1 HET GOL B 303 6 HET GOL B 304 6 HET ATM C 301 23 HET CL C 302 1 HET CL C 303 1 HET ATM D 301 23 HET CA D 302 1 HET CL D 303 1 HET CL D 304 1 HETNAM ATM 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ATM 4(C10 H14 N5 O7 P) FORMUL 6 CL 6(CL 1-) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 16 CA CA 2+ FORMUL 19 HOH *312(H2 O) HELIX 1 1 GLY A 15 GLU A 29 1 15 HELIX 2 2 THR A 43 ALA A 55 1 13 HELIX 3 3 ALA A 62 VAL A 81 1 20 HELIX 4 4 VAL A 81 ARG A 88 1 8 HELIX 5 5 PHE A 97 GLN A 105 1 9 HELIX 6 6 PRO A 112 GLY A 125 1 14 HELIX 7 7 ASP A 153 GLU A 158 5 6 HELIX 8 8 ASP A 159 ALA A 177 1 19 HELIX 9 9 PRO A 189 ASN A 209 1 21 HELIX 10 10 GLY B 15 GLU B 29 1 15 HELIX 11 11 THR B 43 ALA B 55 1 13 HELIX 12 12 ALA B 62 VAL B 81 1 20 HELIX 13 13 VAL B 81 GLY B 89 1 9 HELIX 14 14 PHE B 97 GLN B 105 1 9 HELIX 15 15 PRO B 112 GLY B 125 1 14 HELIX 16 16 ASP B 159 ALA B 177 1 19 HELIX 17 17 PRO B 189 ARG B 199 1 11 HELIX 18 18 LEU B 200 LEU B 208 1 9 HELIX 19 19 GLY C 15 GLU C 29 1 15 HELIX 20 20 THR C 43 ALA C 55 1 13 HELIX 21 21 ALA C 62 VAL C 81 1 20 HELIX 22 22 VAL C 81 ARG C 88 1 8 HELIX 23 23 PHE C 97 GLN C 105 1 9 HELIX 24 24 PRO C 112 GLY C 125 1 14 HELIX 25 25 ASP C 159 ALA C 177 1 19 HELIX 26 26 PRO C 189 ASN C 209 1 21 HELIX 27 27 GLY D 15 GLU D 29 1 15 HELIX 28 28 THR D 43 ALA D 55 1 13 HELIX 29 29 ALA D 62 VAL D 81 1 20 HELIX 30 30 VAL D 81 ARG D 88 1 8 HELIX 31 31 PHE D 97 GLN D 105 1 9 HELIX 32 32 PRO D 112 GLY D 125 1 14 HELIX 33 33 ASP D 159 ALA D 177 1 19 HELIX 34 34 PRO D 189 ASN D 209 1 21 SHEET 1 A 5 VAL A 34 ARG A 38 0 SHEET 2 A 5 VAL A 91 ASP A 95 1 O VAL A 91 N GLN A 35 SHEET 3 A 5 LEU A 4 GLU A 9 1 N VAL A 6 O CYS A 94 SHEET 4 A 5 LEU A 131 ASP A 136 1 O PHE A 135 N GLU A 9 SHEET 5 A 5 TYR A 181 ASP A 185 1 O LEU A 184 N VAL A 134 SHEET 1 B 5 VAL B 34 ARG B 38 0 SHEET 2 B 5 VAL B 91 ASP B 95 1 O VAL B 91 N GLN B 35 SHEET 3 B 5 LEU B 4 GLU B 9 1 N LEU B 4 O VAL B 92 SHEET 4 B 5 LEU B 131 ASP B 136 1 O PHE B 135 N GLU B 9 SHEET 5 B 5 TYR B 181 ASP B 185 1 O LEU B 184 N VAL B 134 SHEET 1 C 5 VAL C 34 ARG C 38 0 SHEET 2 C 5 VAL C 91 ASP C 95 1 O VAL C 91 N GLN C 35 SHEET 3 C 5 LEU C 4 GLU C 9 1 N LEU C 4 O VAL C 92 SHEET 4 C 5 LEU C 131 ASP C 136 1 O LEU C 133 N THR C 7 SHEET 5 C 5 TYR C 181 ASP C 185 1 O LEU C 184 N VAL C 134 SHEET 1 D 5 VAL D 34 ARG D 38 0 SHEET 2 D 5 VAL D 91 ASP D 95 1 O LEU D 93 N GLN D 35 SHEET 3 D 5 LEU D 4 GLU D 9 1 N LEU D 4 O VAL D 92 SHEET 4 D 5 LEU D 131 ASP D 136 1 O LEU D 133 N THR D 7 SHEET 5 D 5 TYR D 181 ASP D 185 1 O LEU D 184 N VAL D 134 LINK OE1 GLU D 158 CA CA D 302 1555 1555 2.52 LINK OD2 ASP D 159 CA CA D 302 1555 1555 2.78 LINK CA CA D 302 O HOH D 497 1555 1555 2.77 CISPEP 1 GLU A 39 PRO A 40 0 -8.77 CISPEP 2 GLU B 39 PRO B 40 0 -5.69 CISPEP 3 GLU C 39 PRO C 40 0 -7.89 CISPEP 4 GLU D 39 PRO D 40 0 -6.84 SITE 1 AC1 11 ARG A 50 MET A 70 ARG A 74 ARG A 96 SITE 2 AC1 11 ALA A 100 THR A 101 TYR A 104 GLN A 105 SITE 3 AC1 11 ARG A 151 PHE A 155 HOH A 423 SITE 1 AC2 2 ARG A 20 THR A 37 SITE 1 AC3 4 PRO A 178 GLU A 179 TYR A 181 GLN A 182 SITE 1 AC4 16 GLU B 39 PRO B 40 ARG B 50 MET B 70 SITE 2 AC4 16 ARG B 74 ARG B 96 PHE B 97 ALA B 100 SITE 3 AC4 16 THR B 101 TYR B 104 GLN B 105 ASP B 153 SITE 4 AC4 16 PHE B 155 HOH B 417 HOH B 422 HOH B 448 SITE 1 AC5 3 ARG B 20 THR B 37 ARG B 38 SITE 1 AC6 8 PRO B 11 GLU B 12 GLY B 13 ALA B 14 SITE 2 AC6 8 GLY B 15 LYS B 16 SER B 17 HOH B 423 SITE 1 AC7 4 ARG B 26 GLU B 29 ARG C 48 GLU C 51 SITE 1 AC8 10 GLU C 39 PRO C 40 ARG C 50 MET C 70 SITE 2 AC8 10 ARG C 74 ARG C 96 THR C 101 TYR C 104 SITE 3 AC8 10 GLN C 105 PHE C 155 SITE 1 AC9 2 ARG C 20 THR C 37 SITE 1 BC1 4 GLY C 10 PRO C 11 TYR C 104 TYR C 170 SITE 1 BC2 15 GLU D 12 GLU D 39 PRO D 40 ARG D 50 SITE 2 BC2 15 MET D 70 ARG D 74 ARG D 96 ALA D 100 SITE 3 BC2 15 THR D 101 TYR D 104 GLN D 105 ASP D 153 SITE 4 BC2 15 PHE D 155 HOH D 436 HOH D 490 SITE 1 BC3 4 GLN B 157 GLU D 158 ASP D 159 HOH D 497 SITE 1 BC4 5 GLY D 10 PRO D 11 ARG D 96 TYR D 104 SITE 2 BC4 5 TYR D 170 SITE 1 BC5 2 ARG D 20 THR D 37 CRYST1 44.500 123.404 73.920 90.00 100.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022472 0.000000 0.003963 0.00000 SCALE2 0.000000 0.008103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013737 0.00000