HEADER RNA BINDING PROTEIN 16-AUG-12 4GMN TITLE STRUCTURAL BASIS OF RPL5 RECOGNITION BY SYO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L5-LIKE PROTEIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 5 GENE: CTHT_0063640, RPL5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 13 ORGANISM_TAXID: 759272; SOURCE 14 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 15 GENE: CTHT_0033460, SYO1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSETTA 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-DUET KEYWDS ARM, HEAT, SOLENOID, LINEAR MOTIF, NUCLEAR TRANSPORT, CHAPERONE, KEYWDS 2 RIBOSOME ASSEMBLY, RPL11, KAP104, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.BANGE,I.SINNING REVDAT 3 28-FEB-24 4GMN 1 SEQADV REVDAT 2 14-NOV-12 4GMN 1 JRNL REVDAT 1 31-OCT-12 4GMN 0 JRNL AUTH D.KRESSLER,G.BANGE,Y.OGAWA,G.STJEPANOVIC,B.BRADATSCH, JRNL AUTH 2 D.PRATTE,S.AMLACHER,D.STRAUSS,Y.YONEDA,J.KATAHIRA,I.SINNING, JRNL AUTH 3 E.HURT JRNL TITL SYNCHRONIZING NUCLEAR IMPORT OF RIBOSOMAL PROTEINS WITH JRNL TITL 2 RIBOSOME ASSEMBLY. JRNL REF SCIENCE V. 338 666 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 23118189 JRNL DOI 10.1126/SCIENCE.1226960 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2445 - 6.3504 0.99 1554 174 0.1748 0.2294 REMARK 3 2 6.3504 - 5.0426 0.99 1471 164 0.2351 0.3153 REMARK 3 3 5.0426 - 4.4058 0.99 1469 163 0.1678 0.1904 REMARK 3 4 4.4058 - 4.0033 0.99 1478 165 0.1693 0.2123 REMARK 3 5 4.0033 - 3.7165 0.99 1444 161 0.1946 0.2518 REMARK 3 6 3.7165 - 3.4974 0.99 1436 161 0.2078 0.2866 REMARK 3 7 3.4974 - 3.3223 0.98 1423 158 0.2346 0.2892 REMARK 3 8 3.3223 - 3.1777 0.97 1397 157 0.2371 0.3106 REMARK 3 9 3.1777 - 3.0554 0.95 1370 154 0.2592 0.3195 REMARK 3 10 3.0554 - 2.9500 0.93 1335 149 0.2702 0.3493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 21.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.45420 REMARK 3 B22 (A**2) : 15.95090 REMARK 3 B33 (A**2) : -12.49670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4531 REMARK 3 ANGLE : 1.259 6158 REMARK 3 CHIRALITY : 0.082 737 REMARK 3 PLANARITY : 0.005 784 REMARK 3 DIHEDRAL : 17.520 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9768 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 63.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SUCCINIC ACID PH 7.0, 20% (V/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.81000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.81000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.12500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.81000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.12500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.81000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 21 REMARK 465 ARG B 22 REMARK 465 ARG B 23 REMARK 465 ARG B 24 REMARK 465 GLN B 25 REMARK 465 GLY B 26 REMARK 465 LYS B 27 REMARK 465 THR B 28 REMARK 465 ASP B 29 REMARK 465 TYR B 30 REMARK 465 TYR B 31 REMARK 465 ALA B 32 REMARK 465 ARG B 33 REMARK 465 LYS B 34 REMARK 465 ARG B 35 REMARK 465 LEU B 36 REMARK 465 ILE B 37 REMARK 465 THR B 38 REMARK 465 GLN B 39 REMARK 465 ALA B 40 REMARK 465 LYS B 41 REMARK 465 GLY B 42 REMARK 465 SER B 43 REMARK 465 HIS B 44 REMARK 465 HIS B 45 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ASN A 7 REMARK 465 ARG A 8 REMARK 465 VAL A 9 REMARK 465 ARG A 10 REMARK 465 ASN A 11 REMARK 465 ARG A 12 REMARK 465 THR A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 LYS A 18 REMARK 465 PRO A 19 REMARK 465 VAL A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 LEU A 31 REMARK 465 ARG A 32 REMARK 465 GLU A 33 REMARK 465 SER A 330 REMARK 465 ARG A 331 REMARK 465 GLU A 332 REMARK 465 SER A 333 REMARK 465 PRO A 334 REMARK 465 ILE A 335 REMARK 465 SER A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 ASP A 339 REMARK 465 GLU A 340 REMARK 465 GLU A 341 REMARK 465 TRP A 342 REMARK 465 ASN A 343 REMARK 465 GLY A 344 REMARK 465 PHE A 345 REMARK 465 ASP A 346 REMARK 465 ASP A 347 REMARK 465 ALA A 348 REMARK 465 ASP A 349 REMARK 465 GLY A 350 REMARK 465 ASP A 351 REMARK 465 ALA A 352 REMARK 465 MET A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 ASP A 356 REMARK 465 GLN A 357 REMARK 465 LYS A 358 REMARK 465 SER A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 GLY A 362 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 GLN A 365 REMARK 465 GLU A 366 REMARK 465 GLU A 367 REMARK 465 ASP A 368 REMARK 465 TYR A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 ILE A 372 REMARK 465 ASP A 373 REMARK 465 VAL A 374 REMARK 465 LYS A 375 REMARK 465 GLU A 376 REMARK 465 ASP A 377 REMARK 465 ASP A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 ASP A 381 REMARK 465 ASP A 382 REMARK 465 ASP A 383 REMARK 465 ASP A 384 REMARK 465 SER A 385 REMARK 465 ILE A 386 REMARK 465 THR A 387 REMARK 465 SER A 388 REMARK 465 GLU A 389 REMARK 465 MET A 390 REMARK 465 GLN A 391 REMARK 465 ALA A 392 REMARK 465 ASP A 393 REMARK 465 MET A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 VAL A 397 REMARK 465 VAL A 398 REMARK 465 GLY A 399 REMARK 465 ALA A 400 REMARK 465 ASP A 401 REMARK 465 GLY A 402 REMARK 465 THR A 403 REMARK 465 ASP A 404 REMARK 465 ASP A 405 REMARK 465 GLY A 406 REMARK 465 GLN A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLY A 540 REMARK 465 ASN A 541 REMARK 465 SER A 542 REMARK 465 ASN A 543 REMARK 465 SER A 544 REMARK 465 ILE A 545 REMARK 465 GLU A 546 REMARK 465 GLU A 547 REMARK 465 PRO A 548 REMARK 465 GLU A 549 REMARK 465 PRO A 675 REMARK 465 LYS A 676 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ARG A 300 CD1 ILE A 304 1.31 REMARK 500 CG ARG A 300 CD1 ILE A 304 1.98 REMARK 500 CD ARG A 300 CD1 ILE A 304 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 107 NH1 ARG A 647 8445 1.90 REMARK 500 NH1 ARG A 73 CG PRO A 650 8445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 141 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 141 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 65 176.76 -58.30 REMARK 500 LYS A 66 -55.61 69.75 REMARK 500 LYS A 181 92.94 -69.92 REMARK 500 ASP A 195 58.43 37.85 REMARK 500 LYS A 269 112.91 -3.64 REMARK 500 LEU A 408 47.17 -101.88 REMARK 500 ILE A 433 1.16 83.57 REMARK 500 ASN A 463 -135.38 60.43 REMARK 500 THR A 484 -66.86 -107.94 REMARK 500 ASP A 520 -74.67 -127.19 REMARK 500 SER A 534 9.92 -66.03 REMARK 500 PRO A 570 60.21 -101.11 REMARK 500 GLN A 589 43.09 -108.94 REMARK 500 VAL A 620 -53.66 -129.65 REMARK 500 THR A 648 70.09 -165.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 140 PRO A 141 -32.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 4GMN B 1 45 UNP G0SEG2 G0SEG2_CHATD 1 45 DBREF 4GMN A 1 676 UNP G0S5S6 G0S5S6_CHATD 1 676 SEQADV 4GMN GLY B 42 UNP G0SEG2 ASN 42 CONFLICT SEQADV 4GMN SER B 43 UNP G0SEG2 LYS 43 CONFLICT SEQADV 4GMN HIS B 44 UNP G0SEG2 TYR 44 CONFLICT SEQADV 4GMN HIS B 45 UNP G0SEG2 ASN 45 CONFLICT SEQADV 4GMN HIS B 46 UNP G0SEG2 EXPRESSION TAG SEQADV 4GMN HIS B 47 UNP G0SEG2 EXPRESSION TAG SEQADV 4GMN HIS B 48 UNP G0SEG2 EXPRESSION TAG SEQADV 4GMN HIS B 49 UNP G0SEG2 EXPRESSION TAG SEQRES 1 B 49 MET ALA PHE HIS LYS LEU VAL LYS ASN SER ALA TYR TYR SEQRES 2 B 49 SER ARG PHE GLN THR LYS PHE LYS ARG ARG ARG GLN GLY SEQRES 3 B 49 LYS THR ASP TYR TYR ALA ARG LYS ARG LEU ILE THR GLN SEQRES 4 B 49 ALA LYS GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 A 676 MET GLY LYS THR ARG ARG ASN ARG VAL ARG ASN ARG THR SEQRES 2 A 676 ASP PRO ILE ALA LYS PRO VAL LYS PRO PRO THR ASP PRO SEQRES 3 A 676 GLU LEU ALA LYS LEU ARG GLU ASP LYS ILE LEU PRO VAL SEQRES 4 A 676 LEU LYS ASP LEU LYS SER PRO ASP ALA LYS SER ARG THR SEQRES 5 A 676 THR ALA ALA GLY ALA ILE ALA ASN ILE VAL GLN ASP ALA SEQRES 6 A 676 LYS CYS ARG LYS LEU LEU LEU ARG GLU GLN VAL VAL HIS SEQRES 7 A 676 ILE VAL LEU THR GLU THR LEU THR ASP ASN ASN ILE ASP SEQRES 8 A 676 SER ARG ALA ALA GLY TRP GLU ILE LEU LYS VAL LEU ALA SEQRES 9 A 676 GLN GLU GLU GLU ALA ASP PHE CYS VAL HIS LEU TYR ARG SEQRES 10 A 676 LEU ASP VAL LEU THR ALA ILE GLU HIS ALA ALA LYS ALA SEQRES 11 A 676 VAL LEU GLU THR LEU THR THR SER GLU PRO PRO PHE SER SEQRES 12 A 676 LYS LEU LEU LYS ALA GLN GLN ARG LEU VAL TRP ASP ILE SEQRES 13 A 676 THR GLY SER LEU LEU VAL LEU ILE GLY LEU LEU ALA LEU SEQRES 14 A 676 ALA ARG ASP GLU ILE HIS GLU ALA VAL ALA THR LYS GLN SEQRES 15 A 676 THR ILE LEU ARG LEU LEU PHE ARG LEU ILE SER ALA ASP SEQRES 16 A 676 ILE ALA PRO GLN ASP ILE TYR GLU GLU ALA ILE SER CYS SEQRES 17 A 676 LEU THR THR LEU SER GLU ASP ASN LEU LYS VAL GLY GLN SEQRES 18 A 676 ALA ILE THR ASP ASP GLN GLU THR HIS VAL TYR ASP VAL SEQRES 19 A 676 LEU LEU LYS LEU ALA THR GLY THR ASP PRO ARG ALA VAL SEQRES 20 A 676 MET ALA CYS GLY VAL LEU HIS ASN VAL PHE THR SER LEU SEQRES 21 A 676 GLN TRP MET ASP HIS SER PRO GLY LYS ASP GLY ALA CYS SEQRES 22 A 676 ASP ALA ILE LEU ILE PRO THR LEU THR ARG ALA LEU GLU SEQRES 23 A 676 HIS VAL VAL PRO GLY GLY ALA LYS PHE ASN GLY ASP ALA SEQRES 24 A 676 ARG TYR ALA ASN ILE THR LEU LEU ALA LEU VAL THR LEU SEQRES 25 A 676 ALA SER ILE GLY THR ASP PHE GLN GLU THR LEU VAL LYS SEQRES 26 A 676 GLY ASN GLN GLY SER ARG GLU SER PRO ILE SER ALA ALA SEQRES 27 A 676 ASP GLU GLU TRP ASN GLY PHE ASP ASP ALA ASP GLY ASP SEQRES 28 A 676 ALA MET ASP VAL ASP GLN LYS SER SER SER GLY GLU ASP SEQRES 29 A 676 GLN GLU GLU ASP TYR GLU GLU ILE ASP VAL LYS GLU ASP SEQRES 30 A 676 ASP GLU ASP ASP ASP ASP ASP SER ILE THR SER GLU MET SEQRES 31 A 676 GLN ALA ASP MET GLU ARG VAL VAL GLY ALA ASP GLY THR SEQRES 32 A 676 ASP ASP GLY ASP LEU GLU ASP LEU PRO THR LEU ARG GLU SEQRES 33 A 676 LEU ILE GLN THR ALA VAL PRO GLN LEU ILE ARG LEU SER SEQRES 34 A 676 ASN LEU PRO ILE ASP SER ASP GLU SER LEU THR ILE GLN SEQRES 35 A 676 SER HIS ALA LEU SER ALA LEU ASN ASN ILE SER TRP THR SEQRES 36 A 676 ILE SER CYS LEU GLU PHE ALA ASN GLY GLU ASN ALA ASN SEQRES 37 A 676 ILE HIS ASN ALA TRP TYR PRO THR ALA LYS LYS ILE TRP SEQRES 38 A 676 ARG LYS THR ILE LEU PRO ILE LEU GLU ALA ASP SER ALA SEQRES 39 A 676 ASP LEU LYS LEU ALA THR GLN VAL THR SER LEU ALA TRP SEQRES 40 A 676 ALA VAL ALA ARG VAL LEU HIS GLY GLU THR PRO THR ASP SEQRES 41 A 676 GLY ASN PRO HIS ARG LYS PHE ILE SER LEU TYR HIS SER SEQRES 42 A 676 SER LYS GLN GLN ALA GLY GLY ASN SER ASN SER ILE GLU SEQRES 43 A 676 GLU PRO GLU ASP PRO PHE GLN GLY LEU GLY VAL LYS CYS SEQRES 44 A 676 ILE GLY VAL VAL GLY SER LEU ALA HIS ASP PRO ALA PRO SEQRES 45 A 676 ILE GLU VAL ASN ARG GLU VAL GLY VAL PHE LEU VAL THR SEQRES 46 A 676 LEU LEU ARG GLN SER ASN ASN VAL PRO PRO ALA GLU ILE SEQRES 47 A 676 VAL GLU ALA LEU ASN GLN LEU PHE ASP ILE TYR GLY ASP SEQRES 48 A 676 GLU GLU LEU ALA CYS ASP LYS GLU VAL PHE TRP LYS ASP SEQRES 49 A 676 GLY PHE LEU LYS HIS LEU GLU GLU PHE LEU PRO LYS MET SEQRES 50 A 676 ARG THR LEU THR LYS GLY ILE ASP LYS ARG THR GLN PRO SEQRES 51 A 676 GLU LEU ARG THR ARG ALA ASP GLU ALA LEU LEU ASN LEU SEQRES 52 A 676 GLY ARG PHE VAL GLN TYR LYS LYS LYS HIS ALA PRO LYS HELIX 1 1 ASN B 9 GLN B 17 5 9 HELIX 2 2 ILE A 36 LYS A 44 1 9 HELIX 3 3 ASP A 47 VAL A 62 1 16 HELIX 4 4 LYS A 66 GLU A 74 1 9 HELIX 5 5 GLN A 75 GLU A 83 1 9 HELIX 6 6 THR A 84 ASP A 87 5 4 HELIX 7 7 ASN A 89 GLU A 107 1 19 HELIX 8 8 ALA A 109 LEU A 118 1 10 HELIX 9 9 ASP A 119 THR A 137 1 19 HELIX 10 10 PRO A 141 LEU A 145 5 5 HELIX 11 11 LEU A 146 LEU A 169 1 24 HELIX 12 12 ARG A 171 ALA A 179 1 9 HELIX 13 13 LYS A 181 ASP A 195 1 15 HELIX 14 14 PRO A 198 GLU A 214 1 17 HELIX 15 15 ASN A 216 ASP A 225 1 10 HELIX 16 16 HIS A 230 GLY A 241 1 12 HELIX 17 17 ARG A 245 LEU A 260 1 16 HELIX 18 18 CYS A 273 ILE A 276 5 4 HELIX 19 19 LEU A 277 ALA A 284 1 8 HELIX 20 20 ARG A 300 THR A 305 1 6 HELIX 21 21 THR A 305 GLY A 329 1 25 HELIX 22 22 LEU A 411 THR A 420 1 10 HELIX 23 23 THR A 420 LEU A 431 1 12 HELIX 24 24 SER A 435 SER A 457 1 23 HELIX 25 25 ASN A 466 THR A 484 1 19 HELIX 26 26 THR A 484 ALA A 491 1 8 HELIX 27 27 ASP A 495 HIS A 514 1 20 HELIX 28 28 ASN A 522 SER A 534 1 13 HELIX 29 29 ASP A 550 GLN A 553 5 4 HELIX 30 30 GLY A 554 LEU A 566 1 13 HELIX 31 31 PRO A 572 GLN A 589 1 18 HELIX 32 32 SER A 590 VAL A 593 5 4 HELIX 33 33 PRO A 594 TYR A 609 1 16 HELIX 34 34 LEU A 614 VAL A 620 1 7 HELIX 35 35 GLY A 625 LYS A 642 1 18 HELIX 36 36 GLN A 649 LYS A 672 1 24 CISPEP 1 PRO A 432 ILE A 433 0 12.78 CISPEP 2 SER A 493 ALA A 494 0 -14.08 CISPEP 3 ASP A 569 PRO A 570 0 7.31 CISPEP 4 THR A 648 GLN A 649 0 17.17 CRYST1 79.620 104.230 182.250 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005487 0.00000