HEADER ISOMERASE 19-AUG-12 4GO9 TITLE CRYSTAL STRUCTURE OF THE TREHALULOSE SYNTHASE MUTANT, MUTB D415N, IN TITLE 2 COMPLEX WITH TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MUTB FRAGMENT, UNP RESIDUES 28-584; COMPND 5 SYNONYM: TREHALULOSE SYNTHASE; COMPND 6 EC: 5.4.11.99; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MESOACIDOPHILA; SOURCE 3 ORGANISM_TAXID: 265293; SOURCE 4 GENE: MUTB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHWG660.2 KEYWDS MUTANT ENZYME, TIM-BARREL, (BETA/ALPHA)8, SUCROSE ISOMERASE, KEYWDS 2 GLYCOSIDE HYDROLASE, TREHALULOSE SYNTHASE, GH13 FAMILY (CAZY KEYWDS 3 DATABASE), CALCIUM BINDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LIPSKI,S.RAVAUD,X.ROBERT,R.HASER,N.AGHAJARI REVDAT 2 08-NOV-23 4GO9 1 REMARK SEQADV LINK REVDAT 1 21-AUG-13 4GO9 0 JRNL AUTH A.LIPSKI,H.WATZLAWICK,S.RAVAUD,X.ROBERT,R.HASER,R.MATTES, JRNL AUTH 2 N.AGHAJARI JRNL TITL CRYSTAL STRUCTURE OF THE TREHALULOSE SYNTHASE MUTB, MUTANT JRNL TITL 2 D415N, IN COMPLEX WITH TRIS JRNL REF TO BE PUBLISHED 2013 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.130 REMARK 3 FREE R VALUE TEST SET COUNT : 6800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8376 - 6.8256 0.97 2052 204 0.1610 0.1669 REMARK 3 2 6.8256 - 5.4217 1.00 2050 224 0.1580 0.2138 REMARK 3 3 5.4217 - 4.7375 1.00 2034 247 0.1353 0.1793 REMARK 3 4 4.7375 - 4.3049 1.00 2005 218 0.1236 0.1569 REMARK 3 5 4.3049 - 3.9966 1.00 2007 246 0.1273 0.1449 REMARK 3 6 3.9966 - 3.7611 1.00 2021 232 0.1348 0.1890 REMARK 3 7 3.7611 - 3.5729 1.00 2015 213 0.1445 0.2211 REMARK 3 8 3.5729 - 3.4174 1.00 2030 227 0.1510 0.1644 REMARK 3 9 3.4174 - 3.2859 1.00 2026 225 0.1604 0.2349 REMARK 3 10 3.2859 - 3.1726 1.00 1989 243 0.1638 0.2159 REMARK 3 11 3.1726 - 3.0734 1.00 1998 233 0.1673 0.2491 REMARK 3 12 3.0734 - 2.9856 1.00 2031 223 0.1718 0.2507 REMARK 3 13 2.9856 - 2.9070 1.00 2000 239 0.1741 0.2521 REMARK 3 14 2.9070 - 2.8361 1.00 2007 213 0.1710 0.2169 REMARK 3 15 2.8361 - 2.7717 1.00 1990 230 0.1723 0.2396 REMARK 3 16 2.7717 - 2.7127 1.00 2024 206 0.1783 0.2488 REMARK 3 17 2.7127 - 2.6584 1.00 2002 235 0.1783 0.2347 REMARK 3 18 2.6584 - 2.6083 1.00 2023 214 0.1751 0.2256 REMARK 3 19 2.6083 - 2.5617 1.00 2006 230 0.1784 0.2354 REMARK 3 20 2.5617 - 2.5183 1.00 2027 229 0.1864 0.2555 REMARK 3 21 2.5183 - 2.4777 1.00 1922 247 0.1841 0.2237 REMARK 3 22 2.4777 - 2.4396 1.00 2049 219 0.1840 0.2522 REMARK 3 23 2.4396 - 2.4037 1.00 1950 237 0.1909 0.2503 REMARK 3 24 2.4037 - 2.3698 1.00 2019 224 0.1952 0.2721 REMARK 3 25 2.3698 - 2.3378 1.00 2034 208 0.2071 0.2716 REMARK 3 26 2.3378 - 2.3074 1.00 1950 238 0.2101 0.2706 REMARK 3 27 2.3074 - 2.2786 1.00 2037 207 0.2059 0.2809 REMARK 3 28 2.2786 - 2.2512 1.00 2017 227 0.2051 0.2791 REMARK 3 29 2.2512 - 2.2250 1.00 1940 245 0.2080 0.2706 REMARK 3 30 2.2250 - 2.2000 1.00 2062 217 0.2298 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 9299 REMARK 3 ANGLE : 0.726 12651 REMARK 3 CHIRALITY : 0.057 1282 REMARK 3 PLANARITY : 0.003 1672 REMARK 3 DIHEDRAL : 11.651 3373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9699 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2PWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 12% (W/V) PEG20000, REMARK 280 0.01M L-CYSTEINE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 PRO A 2 REMARK 465 LYS B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 HIS A 136 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 177 CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 470 LYS B 32 CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 GLN B 380 CG CD OE1 NE2 REMARK 470 GLU B 403 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 7431 O HOH B 7674 2.07 REMARK 500 O HOH A 852 O HOH A 1075 2.11 REMARK 500 O HOH B 7444 O HOH B 7595 2.16 REMARK 500 O HOH B 7443 O HOH B 7595 2.17 REMARK 500 O HOH A 1123 O HOH A 1176 2.17 REMARK 500 O HOH A 912 O HOH A 1089 2.18 REMARK 500 O HOH A 1089 O HOH A 1273 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 122 0.07 -68.09 REMARK 500 HIS A 136 -155.52 -127.00 REMARK 500 PHE A 164 -134.07 -107.62 REMARK 500 THR A 201 56.85 32.88 REMARK 500 VAL A 243 -72.70 -125.32 REMARK 500 GLU A 273 -93.22 -115.75 REMARK 500 LYS A 377 -61.95 -132.69 REMARK 500 ASP A 384 141.08 -170.78 REMARK 500 SER A 477 -67.96 -108.68 REMARK 500 ASP A 485 82.70 -152.74 REMARK 500 PHE B 20 -66.91 -92.18 REMARK 500 ASP B 68 113.93 -162.51 REMARK 500 PHE B 164 -129.68 -105.25 REMARK 500 THR B 201 59.19 32.35 REMARK 500 VAL B 243 -71.25 -126.23 REMARK 500 GLU B 273 -93.65 -115.18 REMARK 500 LYS B 377 -37.85 -130.29 REMARK 500 ASP B 384 144.06 -172.32 REMARK 500 ASP B 485 81.65 -154.34 REMARK 500 ALA B 511 40.52 -84.47 REMARK 500 TRP B 549 18.42 58.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD1 REMARK 620 2 ASN A 24 OD1 73.6 REMARK 620 3 ASP A 26 OD1 78.2 74.9 REMARK 620 4 ILE A 28 O 78.2 146.4 82.0 REMARK 620 5 ASP A 30 OD2 80.9 100.3 159.0 92.6 REMARK 620 6 HOH A1132 O 141.2 78.6 119.9 134.7 78.0 REMARK 620 7 HOH A1133 O 156.5 114.1 82.5 86.0 117.5 61.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B7001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 22 OD1 REMARK 620 2 ASN B 24 OD1 78.6 REMARK 620 3 ASP B 26 OD1 80.9 74.8 REMARK 620 4 ILE B 28 O 78.4 147.1 78.6 REMARK 620 5 ASP B 30 OD2 84.5 105.0 165.1 95.9 REMARK 620 6 HOH B7289 O 155.5 111.5 80.5 82.4 112.7 REMARK 620 7 HOH B7511 O 137.3 75.6 123.1 136.3 70.3 67.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 7002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZJA RELATED DB: PDB REMARK 900 TREHALULOSE SYNTHASE, MUTB, IN COMPLEX WITH TRIS (P1 FORM) REMARK 900 RELATED ID: 2PWH RELATED DB: PDB REMARK 900 MUTB IN THE NATIVE STATE REMARK 900 RELATED ID: 2PWE RELATED DB: PDB REMARK 900 AN INACTIVE MUTANT OF MUTB IN COMPLEX WITH SUCROSE REMARK 900 RELATED ID: 2PWF RELATED DB: PDB REMARK 900 AN INACTIVE MUTANT OF MUTB IN COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2PWD RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH DEOXYNOJIRIMYCIN REMARK 900 RELATED ID: 2PWG RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH CASTANOSPERMINE REMARK 900 RELATED ID: 4GI6 RELATED DB: PDB REMARK 900 MUTB F164L MUTANT FROM CRYSTALS SOAKED WITH GLUCOSE REMARK 900 RELATED ID: 4GI8 RELATED DB: PDB REMARK 900 MUTB F164L MUTANT FROM CRYSTALS SOAKED WITH SUCROSE REMARK 900 RELATED ID: 4GI9 RELATED DB: PDB REMARK 900 MUTB F164L MUTANT FROM CRYSTALS SOAKED WITH TREHALULOSE REMARK 900 RELATED ID: 4GIA RELATED DB: PDB REMARK 900 MUTB F164L MUTANT FROM CRYSTALS SOAKED WITH ISOMALTULOSE REMARK 900 RELATED ID: 4GIN RELATED DB: PDB REMARK 900 MUTB R284C MUTANT FROM CRYSTALS SOAKED WITH DEOXYNOJIRIMYCIN REMARK 900 RELATED ID: 1ZJB RELATED DB: PDB REMARK 900 TREHALULOSE SYNTHASE, MUTB, IN COMPLEX WITH TRIS (P21 FORM) REMARK 900 RELATED ID: 4GO8 RELATED DB: PDB REMARK 900 MUTB A258V MUTANT IN COMPLEX WITH TRIS DBREF 4GO9 A 1 557 UNP Q2PS28 Q2PS28_9PSED 28 584 DBREF 4GO9 B 1 557 UNP Q2PS28 Q2PS28_9PSED 28 584 SEQADV 4GO9 ASN A 415 UNP Q2PS28 ASP 442 ENGINEERED MUTATION SEQADV 4GO9 ASN B 415 UNP Q2PS28 ASP 442 ENGINEERED MUTATION SEQRES 1 A 557 LYS PRO GLY ALA PRO TRP TRP LYS SER ALA VAL PHE TYR SEQRES 2 A 557 GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP SEQRES 3 A 557 GLY ILE GLY ASP PHE LYS GLY LEU THR GLU LYS LEU ASP SEQRES 4 A 557 TYR LEU LYS GLY LEU GLY ILE ASP ALA ILE TRP ILE ASN SEQRES 5 A 557 PRO HIS TYR ALA SER PRO ASN THR ASP ASN GLY TYR ASP SEQRES 6 A 557 ILE SER ASP TYR ARG GLU VAL MET LYS GLU TYR GLY THR SEQRES 7 A 557 MET GLU ASP PHE ASP ARG LEU MET ALA GLU LEU LYS LYS SEQRES 8 A 557 ARG GLY MET ARG LEU MET VAL ASP VAL VAL ILE ASN HIS SEQRES 9 A 557 SER SER ASP GLN HIS GLU TRP PHE LYS SER SER ARG ALA SEQRES 10 A 557 SER LYS ASP ASN PRO TYR ARG ASP TYR TYR PHE TRP ARG SEQRES 11 A 557 ASP GLY LYS ASP GLY HIS GLU PRO ASN ASN TYR PRO SER SEQRES 12 A 557 PHE PHE GLY GLY SER ALA TRP GLU LYS ASP PRO VAL THR SEQRES 13 A 557 GLY GLN TYR TYR LEU HIS TYR PHE GLY ARG GLN GLN PRO SEQRES 14 A 557 ASP LEU ASN TRP ASP THR PRO LYS LEU ARG GLU GLU LEU SEQRES 15 A 557 TYR ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER SEQRES 16 A 557 GLY MET ARG PHE ASP THR VAL ALA THR TYR SER LYS THR SEQRES 17 A 557 PRO GLY PHE PRO ASP LEU THR PRO GLU GLN MET LYS ASN SEQRES 18 A 557 PHE ALA GLU ALA TYR THR GLN GLY PRO ASN LEU HIS ARG SEQRES 19 A 557 TYR LEU GLN GLU MET HIS GLU LYS VAL PHE ASP HIS TYR SEQRES 20 A 557 ASP ALA VAL THR ALA GLY GLU ILE PHE GLY ALA PRO LEU SEQRES 21 A 557 ASN GLN VAL PRO LEU PHE ILE ASP SER ARG ARG LYS GLU SEQRES 22 A 557 LEU ASP MET ALA PHE THR PHE ASP LEU ILE ARG TYR ASP SEQRES 23 A 557 ARG ALA LEU ASP ARG TRP HIS THR ILE PRO ARG THR LEU SEQRES 24 A 557 ALA ASP PHE ARG GLN THR ILE ASP LYS VAL ASP ALA ILE SEQRES 25 A 557 ALA GLY GLU TYR GLY TRP ASN THR PHE PHE LEU GLY ASN SEQRES 26 A 557 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 A 557 ARG PRO GLN TRP ARG GLU ALA SER ALA LYS ALA LEU ALA SEQRES 28 A 557 THR VAL THR LEU THR GLN ARG GLY THR PRO PHE ILE PHE SEQRES 29 A 557 GLN GLY ASP GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 A 557 THR LEU GLN ASP PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 A 557 PHE GLN ASP TYR VAL GLU THR GLY LYS ALA THR ALA GLU SEQRES 32 A 557 GLU LEU LEU THR ASN VAL ALA LEU THR SER ARG ASN ASN SEQRES 33 A 557 ALA ARG THR PRO PHE GLN TRP ASP ASP SER ALA ASN ALA SEQRES 34 A 557 GLY PHE THR THR GLY LYS PRO TRP LEU LYS VAL ASN PRO SEQRES 35 A 557 ASN TYR THR GLU ILE ASN ALA ALA ARG GLU ILE GLY ASP SEQRES 36 A 557 PRO LYS SER VAL TYR SER PHE TYR ARG ASN LEU ILE SER SEQRES 37 A 557 ILE ARG HIS GLU THR PRO ALA LEU SER THR GLY SER TYR SEQRES 38 A 557 ARG ASP ILE ASP PRO SER ASN ALA ASP VAL TYR ALA TYR SEQRES 39 A 557 THR ARG SER GLN ASP GLY GLU THR TYR LEU VAL VAL VAL SEQRES 40 A 557 ASN PHE LYS ALA GLU PRO ARG SER PHE THR LEU PRO ASP SEQRES 41 A 557 GLY MET HIS ILE ALA GLU THR LEU ILE GLU SER SER SER SEQRES 42 A 557 PRO ALA ALA PRO ALA ALA GLY ALA ALA SER LEU GLU LEU SEQRES 43 A 557 GLN PRO TRP GLN SER GLY ILE TYR LYS VAL LYS SEQRES 1 B 557 LYS PRO GLY ALA PRO TRP TRP LYS SER ALA VAL PHE TYR SEQRES 2 B 557 GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP SEQRES 3 B 557 GLY ILE GLY ASP PHE LYS GLY LEU THR GLU LYS LEU ASP SEQRES 4 B 557 TYR LEU LYS GLY LEU GLY ILE ASP ALA ILE TRP ILE ASN SEQRES 5 B 557 PRO HIS TYR ALA SER PRO ASN THR ASP ASN GLY TYR ASP SEQRES 6 B 557 ILE SER ASP TYR ARG GLU VAL MET LYS GLU TYR GLY THR SEQRES 7 B 557 MET GLU ASP PHE ASP ARG LEU MET ALA GLU LEU LYS LYS SEQRES 8 B 557 ARG GLY MET ARG LEU MET VAL ASP VAL VAL ILE ASN HIS SEQRES 9 B 557 SER SER ASP GLN HIS GLU TRP PHE LYS SER SER ARG ALA SEQRES 10 B 557 SER LYS ASP ASN PRO TYR ARG ASP TYR TYR PHE TRP ARG SEQRES 11 B 557 ASP GLY LYS ASP GLY HIS GLU PRO ASN ASN TYR PRO SER SEQRES 12 B 557 PHE PHE GLY GLY SER ALA TRP GLU LYS ASP PRO VAL THR SEQRES 13 B 557 GLY GLN TYR TYR LEU HIS TYR PHE GLY ARG GLN GLN PRO SEQRES 14 B 557 ASP LEU ASN TRP ASP THR PRO LYS LEU ARG GLU GLU LEU SEQRES 15 B 557 TYR ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER SEQRES 16 B 557 GLY MET ARG PHE ASP THR VAL ALA THR TYR SER LYS THR SEQRES 17 B 557 PRO GLY PHE PRO ASP LEU THR PRO GLU GLN MET LYS ASN SEQRES 18 B 557 PHE ALA GLU ALA TYR THR GLN GLY PRO ASN LEU HIS ARG SEQRES 19 B 557 TYR LEU GLN GLU MET HIS GLU LYS VAL PHE ASP HIS TYR SEQRES 20 B 557 ASP ALA VAL THR ALA GLY GLU ILE PHE GLY ALA PRO LEU SEQRES 21 B 557 ASN GLN VAL PRO LEU PHE ILE ASP SER ARG ARG LYS GLU SEQRES 22 B 557 LEU ASP MET ALA PHE THR PHE ASP LEU ILE ARG TYR ASP SEQRES 23 B 557 ARG ALA LEU ASP ARG TRP HIS THR ILE PRO ARG THR LEU SEQRES 24 B 557 ALA ASP PHE ARG GLN THR ILE ASP LYS VAL ASP ALA ILE SEQRES 25 B 557 ALA GLY GLU TYR GLY TRP ASN THR PHE PHE LEU GLY ASN SEQRES 26 B 557 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 B 557 ARG PRO GLN TRP ARG GLU ALA SER ALA LYS ALA LEU ALA SEQRES 28 B 557 THR VAL THR LEU THR GLN ARG GLY THR PRO PHE ILE PHE SEQRES 29 B 557 GLN GLY ASP GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 B 557 THR LEU GLN ASP PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 B 557 PHE GLN ASP TYR VAL GLU THR GLY LYS ALA THR ALA GLU SEQRES 32 B 557 GLU LEU LEU THR ASN VAL ALA LEU THR SER ARG ASN ASN SEQRES 33 B 557 ALA ARG THR PRO PHE GLN TRP ASP ASP SER ALA ASN ALA SEQRES 34 B 557 GLY PHE THR THR GLY LYS PRO TRP LEU LYS VAL ASN PRO SEQRES 35 B 557 ASN TYR THR GLU ILE ASN ALA ALA ARG GLU ILE GLY ASP SEQRES 36 B 557 PRO LYS SER VAL TYR SER PHE TYR ARG ASN LEU ILE SER SEQRES 37 B 557 ILE ARG HIS GLU THR PRO ALA LEU SER THR GLY SER TYR SEQRES 38 B 557 ARG ASP ILE ASP PRO SER ASN ALA ASP VAL TYR ALA TYR SEQRES 39 B 557 THR ARG SER GLN ASP GLY GLU THR TYR LEU VAL VAL VAL SEQRES 40 B 557 ASN PHE LYS ALA GLU PRO ARG SER PHE THR LEU PRO ASP SEQRES 41 B 557 GLY MET HIS ILE ALA GLU THR LEU ILE GLU SER SER SER SEQRES 42 B 557 PRO ALA ALA PRO ALA ALA GLY ALA ALA SER LEU GLU LEU SEQRES 43 B 557 GLN PRO TRP GLN SER GLY ILE TYR LYS VAL LYS HET CA A 601 1 HET TRS A 602 8 HET CA B7001 1 HET TRS B7002 8 HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 CA 2(CA 2+) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *1230(H2 O) HELIX 1 1 PRO A 5 SER A 9 5 5 HELIX 2 2 TYR A 16 PHE A 20 5 5 HELIX 3 3 ASP A 30 LYS A 37 1 8 HELIX 4 4 LYS A 37 GLY A 45 1 9 HELIX 5 5 THR A 78 ARG A 92 1 15 HELIX 6 6 HIS A 109 SER A 118 1 10 HELIX 7 7 TYR A 123 TYR A 127 5 5 HELIX 8 8 THR A 175 ASP A 191 1 17 HELIX 9 9 THR A 201 TYR A 205 5 5 HELIX 10 10 THR A 215 ASN A 221 1 7 HELIX 11 11 ASN A 221 TYR A 226 1 6 HELIX 12 12 ASN A 231 VAL A 243 1 13 HELIX 13 13 PHE A 244 TYR A 247 5 4 HELIX 14 14 PRO A 259 GLN A 262 5 4 HELIX 15 15 VAL A 263 ASP A 268 1 6 HELIX 16 16 SER A 269 LYS A 272 5 4 HELIX 17 17 THR A 298 GLY A 314 1 17 HELIX 18 18 ARG A 330 GLY A 336 1 7 HELIX 19 19 TRP A 342 LEU A 355 1 14 HELIX 20 20 THR A 378 ASP A 383 5 6 HELIX 21 21 ASP A 384 VAL A 395 1 12 HELIX 22 22 THR A 401 SER A 413 1 13 HELIX 23 23 ARG A 414 ARG A 418 5 5 HELIX 24 24 SER A 426 PHE A 431 5 6 HELIX 25 25 ASN A 441 GLU A 446 5 6 HELIX 26 26 ASN A 448 GLY A 454 1 7 HELIX 27 27 SER A 458 GLU A 472 1 15 HELIX 28 28 PRO A 474 GLY A 479 1 6 HELIX 29 29 PRO B 5 SER B 9 5 5 HELIX 30 30 TYR B 16 PHE B 20 5 5 HELIX 31 31 ASP B 30 LYS B 37 1 8 HELIX 32 32 LYS B 37 GLY B 45 1 9 HELIX 33 33 THR B 78 ARG B 92 1 15 HELIX 34 34 HIS B 109 ARG B 116 1 8 HELIX 35 35 TYR B 123 TYR B 127 5 5 HELIX 36 36 THR B 175 ASP B 191 1 17 HELIX 37 37 THR B 201 TYR B 205 5 5 HELIX 38 38 THR B 215 ASN B 221 1 7 HELIX 39 39 ASN B 221 THR B 227 1 7 HELIX 40 40 ASN B 231 VAL B 243 1 13 HELIX 41 41 PHE B 244 TYR B 247 5 4 HELIX 42 42 PRO B 259 GLN B 262 5 4 HELIX 43 43 VAL B 263 ASP B 268 1 6 HELIX 44 44 SER B 269 LYS B 272 5 4 HELIX 45 45 THR B 298 GLY B 314 1 17 HELIX 46 46 ARG B 330 GLY B 336 1 7 HELIX 47 47 TRP B 342 LEU B 355 1 14 HELIX 48 48 THR B 378 ASP B 383 5 6 HELIX 49 49 ASP B 384 VAL B 395 1 12 HELIX 50 50 THR B 401 SER B 413 1 13 HELIX 51 51 ARG B 414 ARG B 418 5 5 HELIX 52 52 SER B 426 PHE B 431 5 6 HELIX 53 53 ASN B 441 GLU B 446 5 6 HELIX 54 54 ASN B 448 GLY B 454 1 7 HELIX 55 55 SER B 458 THR B 473 1 16 HELIX 56 56 PRO B 474 SER B 477 5 4 SHEET 1 A 8 MET A 276 PHE A 278 0 SHEET 2 A 8 VAL A 250 GLU A 254 1 N GLY A 253 O PHE A 278 SHEET 3 A 8 GLY A 196 PHE A 199 1 N PHE A 199 O ALA A 252 SHEET 4 A 8 ARG A 95 VAL A 100 1 N VAL A 100 O ARG A 198 SHEET 5 A 8 ALA A 48 ILE A 51 1 N ILE A 49 O MET A 97 SHEET 6 A 8 PHE A 12 VAL A 15 1 N VAL A 15 O TRP A 50 SHEET 7 A 8 THR A 360 PHE A 364 1 O ILE A 363 N GLN A 14 SHEET 8 A 8 THR A 320 PHE A 321 1 N PHE A 321 O PHE A 362 SHEET 1 B 2 TYR A 55 ALA A 56 0 SHEET 2 B 2 ASP A 68 VAL A 72 -1 O GLU A 71 N ALA A 56 SHEET 1 C 3 TRP A 129 ARG A 130 0 SHEET 2 C 3 TYR A 159 LEU A 161 -1 O TYR A 159 N ARG A 130 SHEET 3 C 3 TRP A 150 LYS A 152 -1 N GLU A 151 O TYR A 160 SHEET 1 D 5 SER A 480 ASP A 483 0 SHEET 2 D 5 VAL A 491 GLN A 498 -1 O SER A 497 N SER A 480 SHEET 3 D 5 GLU A 501 ASN A 508 -1 O VAL A 507 N TYR A 492 SHEET 4 D 5 SER A 551 VAL A 556 -1 O TYR A 554 N LEU A 504 SHEET 5 D 5 ILE A 524 SER A 531 -1 N ALA A 525 O LYS A 555 SHEET 1 E 2 ARG A 514 THR A 517 0 SHEET 2 E 2 SER A 543 LEU A 546 -1 O LEU A 546 N ARG A 514 SHEET 1 F 8 MET B 276 PHE B 278 0 SHEET 2 F 8 VAL B 250 GLU B 254 1 N GLY B 253 O PHE B 278 SHEET 3 F 8 GLY B 196 PHE B 199 1 N PHE B 199 O ALA B 252 SHEET 4 F 8 ARG B 95 VAL B 100 1 N VAL B 100 O ARG B 198 SHEET 5 F 8 ALA B 48 ILE B 51 1 N ILE B 49 O MET B 97 SHEET 6 F 8 PHE B 12 VAL B 15 1 N VAL B 15 O TRP B 50 SHEET 7 F 8 THR B 360 PHE B 364 1 O ILE B 363 N GLN B 14 SHEET 8 F 8 THR B 320 PHE B 321 1 N PHE B 321 O PHE B 362 SHEET 1 G 2 TYR B 55 ALA B 56 0 SHEET 2 G 2 ASP B 68 VAL B 72 -1 O GLU B 71 N ALA B 56 SHEET 1 H 3 TRP B 129 ARG B 130 0 SHEET 2 H 3 TYR B 159 LEU B 161 -1 O TYR B 159 N ARG B 130 SHEET 3 H 3 TRP B 150 LYS B 152 -1 N GLU B 151 O TYR B 160 SHEET 1 I 5 SER B 480 ASP B 483 0 SHEET 2 I 5 VAL B 491 GLN B 498 -1 O SER B 497 N SER B 480 SHEET 3 I 5 GLU B 501 ASN B 508 -1 O VAL B 505 N TYR B 494 SHEET 4 I 5 SER B 551 VAL B 556 -1 O TYR B 554 N LEU B 504 SHEET 5 I 5 ILE B 524 SER B 531 -1 N ALA B 525 O LYS B 555 SHEET 1 J 2 ARG B 514 THR B 517 0 SHEET 2 J 2 SER B 543 LEU B 546 -1 O LEU B 546 N ARG B 514 LINK OD1 ASP A 22 CA CA A 601 1555 1555 2.37 LINK OD1 ASN A 24 CA CA A 601 1555 1555 2.36 LINK OD1 ASP A 26 CA CA A 601 1555 1555 2.38 LINK O ILE A 28 CA CA A 601 1555 1555 2.35 LINK OD2 ASP A 30 CA CA A 601 1555 1555 2.49 LINK CA CA A 601 O HOH A1132 1555 1555 2.48 LINK CA CA A 601 O HOH A1133 1555 1555 2.34 LINK OD1 ASP B 22 CA CA B7001 1555 1555 2.32 LINK OD1 ASN B 24 CA CA B7001 1555 1555 2.35 LINK OD1 ASP B 26 CA CA B7001 1555 1555 2.47 LINK O ILE B 28 CA CA B7001 1555 1555 2.39 LINK OD2 ASP B 30 CA CA B7001 1555 1555 2.42 LINK CA CA B7001 O HOH B7289 1555 1555 2.36 LINK CA CA B7001 O HOH B7511 1555 1555 2.55 SITE 1 AC1 7 ASP A 22 ASN A 24 ASP A 26 ILE A 28 SITE 2 AC1 7 ASP A 30 HOH A1132 HOH A1133 SITE 1 AC2 11 ASP A 61 TYR A 64 HIS A 104 PHE A 145 SITE 2 AC2 11 PHE A 164 ASP A 200 GLU A 254 ARG A 414 SITE 3 AC2 11 HOH A 703 HOH A1269 HOH A1282 SITE 1 AC3 7 ASP B 22 ASN B 24 ASP B 26 ILE B 28 SITE 2 AC3 7 ASP B 30 HOH B7289 HOH B7511 SITE 1 AC4 11 ASP B 61 TYR B 64 HIS B 104 PHE B 145 SITE 2 AC4 11 PHE B 164 ASP B 200 GLU B 254 ARG B 414 SITE 3 AC4 11 HOH B7118 HOH B7665 HOH B7667 CRYST1 64.520 84.990 123.950 90.00 99.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015499 0.000000 0.002602 0.00000 SCALE2 0.000000 0.011766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008181 0.00000