HEADER HYDROLASE/ANTIBIOTIC 20-AUG-12 4GOG TITLE CRYSTAL STRUCTURE OF THE GES-1 IMIPENEM ACYL-ENZYME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE GES-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GES-1 EXTENDED-SPECTRUM BETA-LACTAMASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: GES-1, BLAGES-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, CARBAPENEMASE, IMIPENEM, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SMITH,S.B.VAKULENKO,J.MUNOZ REVDAT 1 24-JUL-13 4GOG 0 JRNL AUTH C.A.SMITH,H.FRASE,M.TOTH,M.KUMARASIRI,K.WIAFE,J.MUNOZ, JRNL AUTH 2 S.MOBASHERY,S.B.VAKULENKO JRNL TITL STRUCTURAL BASIS FOR PROGRESSION TOWARD THE CARBAPENEMASE JRNL TITL 2 ACTIVITY IN THE GES FAMILY OF BETA-LACTAMASES. JRNL REF J.AM.CHEM.SOC. V. 134 19512 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 23148776 JRNL DOI 10.1021/JA308197J REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 191760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 9658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3180 - 3.4149 0.97 0 316 0.1559 0.1545 REMARK 3 2 3.4149 - 2.7117 0.99 0 349 0.1593 0.1749 REMARK 3 3 2.7117 - 2.3692 0.99 0 371 0.1583 0.1739 REMARK 3 4 2.3692 - 2.1528 0.95 0 308 0.1430 0.1537 REMARK 3 5 2.1528 - 1.9985 0.97 0 319 0.1339 0.1474 REMARK 3 6 1.9985 - 1.8807 0.99 0 304 0.1398 0.1612 REMARK 3 7 1.8807 - 1.7866 0.99 0 367 0.1342 0.1515 REMARK 3 8 1.7866 - 1.7088 0.99 0 280 0.1349 0.1545 REMARK 3 9 1.7088 - 1.6431 0.99 0 318 0.1239 0.1426 REMARK 3 10 1.6431 - 1.5864 1.00 0 293 0.1182 0.1422 REMARK 3 11 1.5864 - 1.5368 0.95 0 280 0.1193 0.1636 REMARK 3 12 1.5368 - 1.4929 0.97 0 305 0.1151 0.1421 REMARK 3 13 1.4929 - 1.4536 0.98 0 333 0.1202 0.1445 REMARK 3 14 1.4536 - 1.4181 0.98 0 339 0.1242 0.1568 REMARK 3 15 1.4181 - 1.3859 0.99 0 317 0.1347 0.1745 REMARK 3 16 1.3859 - 1.3564 0.99 0 315 0.1377 0.1743 REMARK 3 17 1.3564 - 1.3293 0.99 0 334 0.1415 0.1754 REMARK 3 18 1.3293 - 1.3042 0.99 0 335 0.1391 0.1804 REMARK 3 19 1.3042 - 1.2809 0.99 0 343 0.1414 0.1644 REMARK 3 20 1.2809 - 1.2592 1.00 0 305 0.1530 0.1654 REMARK 3 21 1.2592 - 1.2389 0.95 0 350 0.1621 0.1962 REMARK 3 22 1.2389 - 1.2198 0.97 0 336 0.1712 0.2052 REMARK 3 23 1.2198 - 1.2019 0.97 0 311 0.1748 0.2165 REMARK 3 24 1.2019 - 1.1849 0.98 0 293 0.1813 0.2108 REMARK 3 25 1.1849 - 1.1689 0.98 0 347 0.1885 0.2247 REMARK 3 26 1.1689 - 1.1537 0.99 0 319 0.1896 0.2159 REMARK 3 27 1.1537 - 1.1393 0.98 0 295 0.1990 0.2108 REMARK 3 28 1.1393 - 1.1256 0.99 0 337 0.1984 0.2053 REMARK 3 29 1.1256 - 1.1125 0.99 0 329 0.2140 0.2598 REMARK 3 30 1.1125 - 1.1000 0.98 0 310 0.2379 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 46.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36410 REMARK 3 B22 (A**2) : -0.35910 REMARK 3 B33 (A**2) : -1.00490 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.73800 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4628 REMARK 3 ANGLE : 1.230 6345 REMARK 3 CHIRALITY : 0.083 726 REMARK 3 PLANARITY : 0.006 844 REMARK 3 DIHEDRAL : 14.931 1839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB074439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNBUFFERED 0.2% SODIUM IODIDE AND 18- REMARK 280 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.61000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 HIS A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 287 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 HIS B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 ILE B 12 REMARK 465 ALA B 13 REMARK 465 HIS B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 ALA B 18 REMARK 465 THR B 285 REMARK 465 ASP B 286 REMARK 465 LYS B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 -138.44 46.67 REMARK 500 THR A 215 -131.26 -105.41 REMARK 500 GLN A 247 -111.29 53.48 REMARK 500 CYS B 63 -131.61 30.62 REMARK 500 THR B 215 -127.49 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 881 DISTANCE = 5.47 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 IM2 A 501 REMARK 615 IM2 B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IM2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IM2 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GNU RELATED DB: PDB REMARK 900 GES-5 APO FORM REMARK 900 RELATED ID: 4H8R RELATED DB: PDB DBREF 4GOG A 1 287 UNP Q9KJY7 Q9KJY7_KLEPN 1 287 DBREF 4GOG B 1 287 UNP Q9KJY7 Q9KJY7_KLEPN 1 287 SEQRES 1 A 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 A 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 A 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 A 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 A 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 A 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 A 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 A 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 A 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 A 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 A 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 A 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 A 287 LEU ASP ARG LYS GLU PRO GLU MET GLY ASP ASN THR PRO SEQRES 14 A 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 A 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 A 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 A 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 A 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 A 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 A 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 A 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 A 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 A 287 LYS SEQRES 1 B 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 B 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 B 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 B 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 B 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 B 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 B 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 B 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 B 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 B 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 B 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 B 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 B 287 LEU ASP ARG LYS GLU PRO GLU MET GLY ASP ASN THR PRO SEQRES 14 B 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 B 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 B 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 B 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 B 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 B 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 B 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 B 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 B 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 B 287 LYS HET IM2 A 501 20 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD A 506 1 HET IOD A 507 1 HET IOD A 508 1 HET IOD A 509 1 HET NA A 510 1 HET IM2 B 501 20 HET IOD B 502 1 HET IOD B 503 1 HET IOD B 504 1 HET IOD B 505 1 HET IOD B 506 1 HET IOD B 507 1 HET IOD B 508 1 HET IOD B 509 1 HET IOD B 510 1 HET IOD B 511 1 HET IOD B 512 1 HET NA B 513 1 HETNAM IM2 (5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)- HETNAM 2 IM2 IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H- HETNAM 3 IM2 PYRROLE-2-CARBOXYLIC ACID HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETSYN IM2 IMIPENEM, OPEN FORM; N-FORMIMIDOYL-THIENAMYCINE, OPEN HETSYN 2 IM2 FORM FORMUL 3 IM2 2(C12 H19 N3 O4 S) FORMUL 4 IOD 19(I 1-) FORMUL 12 NA 2(NA 1+) FORMUL 26 HOH *615(H2 O) HELIX 1 1 SER A 19 ALA A 36 1 18 HELIX 2 2 CYS A 63 THR A 65 5 3 HELIX 3 3 PHE A 66 GLY A 81 1 16 HELIX 4 4 GLY A 92 ILE A 96 5 5 HELIX 5 5 SER A 100 LEU A 107 1 8 HELIX 6 6 VAL A 114 SER A 125 1 12 HELIX 7 7 ASP A 126 GLY A 138 1 13 HELIX 8 8 GLY A 138 ILE A 150 1 13 HELIX 9 9 PRO A 162 ASP A 166 5 5 HELIX 10 10 THR A 177 GLY A 191 1 15 HELIX 11 11 THR A 195 GLY A 208 1 14 HELIX 12 12 THR A 215 PHE A 220 5 6 HELIX 13 13 SER A 263 THR A 285 1 23 HELIX 14 14 GLU B 20 ALA B 36 1 17 HELIX 15 15 CYS B 63 THR B 65 5 3 HELIX 16 16 PHE B 66 SER B 80 1 15 HELIX 17 17 GLY B 92 ILE B 96 5 5 HELIX 18 18 SER B 100 LEU B 107 1 8 HELIX 19 19 VAL B 114 SER B 125 1 12 HELIX 20 20 ASP B 126 GLY B 138 1 13 HELIX 21 21 GLY B 138 ILE B 150 1 13 HELIX 22 22 PRO B 162 ASP B 166 5 5 HELIX 23 23 THR B 177 GLY B 191 1 15 HELIX 24 24 THR B 195 GLY B 208 1 14 HELIX 25 25 THR B 215 PHE B 220 1 6 HELIX 26 26 SER B 263 LEU B 283 1 21 SHEET 1 A 5 ILE A 50 HIS A 54 0 SHEET 2 A 5 GLN A 38 VAL A 44 -1 N ILE A 43 O VAL A 51 SHEET 3 A 5 ARG A 249 THR A 258 -1 O TYR A 256 N GLY A 40 SHEET 4 A 5 GLY A 237 ALA A 246 -1 N GLY A 242 O VAL A 253 SHEET 5 A 5 VAL A 225 CYS A 233 -1 N LYS A 229 O ILE A 241 SHEET 1 B 2 PHE A 60 ALA A 61 0 SHEET 2 B 2 THR A 175 THR A 176 -1 O THR A 176 N PHE A 60 SHEET 1 C 2 LYS A 88 SER A 90 0 SHEET 2 C 2 HIS A 111 THR A 113 -1 O MET A 112 N LEU A 89 SHEET 1 D 5 ILE B 50 HIS B 54 0 SHEET 2 D 5 GLN B 38 VAL B 44 -1 N ILE B 43 O VAL B 51 SHEET 3 D 5 ARG B 249 THR B 258 -1 O TYR B 256 N GLY B 40 SHEET 4 D 5 GLY B 237 ALA B 246 -1 N GLY B 242 O VAL B 253 SHEET 5 D 5 VAL B 225 CYS B 233 -1 N LYS B 229 O ILE B 241 SHEET 1 E 2 PHE B 60 ALA B 61 0 SHEET 2 E 2 THR B 175 THR B 176 -1 O THR B 176 N PHE B 60 SHEET 1 F 2 LYS B 88 SER B 90 0 SHEET 2 F 2 HIS B 111 THR B 113 -1 O MET B 112 N LEU B 89 SSBOND 1 CYS A 63 CYS A 233 1555 1555 2.04 SSBOND 2 CYS B 63 CYS B 233 1555 1555 2.03 LINK OD1 ASP A 94 NA NA A 510 1555 1555 1.95 LINK OD1BASP B 94 NA NA B 513 1555 1555 2.96 LINK OG SER A 64 C7 IM2 A 501 1555 1555 1.42 LINK OG SER B 64 C7 IM2 B 501 1555 1555 1.42 CISPEP 1 GLU A 161 PRO A 162 0 -0.35 CISPEP 2 GLU B 161 PRO B 162 0 -0.03 SITE 1 AC1 12 CYS A 63 SER A 64 SER A 125 ASN A 127 SITE 2 AC1 12 GLU A 161 LYS A 229 THR A 230 GLY A 231 SITE 3 AC1 12 THR A 232 ARG A 238 HOH A 646 HOH A 764 SITE 1 AC2 1 MET A 56 SITE 1 AC3 1 ARG A 204 SITE 1 AC4 2 LYS A 222 IOD B 511 SITE 1 AC5 2 ARG A 105 GLN B 210 SITE 1 AC6 1 NA A 510 SITE 1 AC7 3 PRO A 93 ASP A 94 IOD A 508 SITE 1 AC8 12 CYS B 63 SER B 64 SER B 125 ASN B 127 SITE 2 AC8 12 GLU B 161 LYS B 229 THR B 230 GLY B 231 SITE 3 AC8 12 THR B 232 ARG B 238 HOH B 668 HOH B 778 SITE 1 AC9 1 ARG B 204 SITE 1 BC1 1 HOH B 671 SITE 1 BC2 5 CYS B 233 GLY B 236 GLY B 237 ARG B 267 SITE 2 BC2 5 HOH B 618 SITE 1 BC3 2 THR B 177 ILE B 179 SITE 1 BC4 3 GLN B 145 LYS B 149 GLN B 280 SITE 1 BC5 2 GLN A 210 ARG B 105 SITE 1 BC6 2 ILE B 150 LYS B 187 SITE 1 BC7 2 THR B 113 HOH B 666 SITE 1 BC8 2 IOD A 506 PRO B 93 SITE 1 BC9 3 GLY B 92 ASP B 94 ARG B 135 CRYST1 42.950 81.220 72.120 90.00 102.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023283 0.000000 0.005071 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014191 0.00000