HEADER TRANSCRIPTION/DNA 20-AUG-12 4GOR OBSLTE 04-SEP-13 4GOR 4KI2 TITLE CRYSTALLOGRAPHIC ANALYSIS OF AN RNA-POLYMERASE SIGMA-SUBUNIT FRAGMENT TITLE 2 COMPLEXED WITH -10 PROMOTER ELEMENT SSDNA: G-QUADRUPLEX FORMATION AND TITLE 3 CRYSTAL PACKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3'; COMPND 3 CHAIN: D, E, F, G; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: -10 PROMOTER ELEMENT SSDNA; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA POLYMERASE SIGMA FACTOR; COMPND 8 CHAIN: A, B; COMPND 9 FRAGMENT: DOMAINS 2+3 (UNP RESIDUES 92-332); COMPND 10 SYNONYM: RNA POLYMERASE SIGMA SUBUNIT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 5 ORGANISM_TAXID: 271; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, SSDNA, G-QUARTET, CRYSTAL PACKING, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.FEKLISTOV,S.DARST REVDAT 2 04-SEP-13 4GOR 1 OBSLTE REVDAT 1 19-SEP-12 4GOR 0 JRNL AUTH A.FEKLISTOV,S.DARST JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF AN RNA-POLYMERASE SIGMA-SUBUNIT JRNL TITL 2 FRAGMENT COMPLEXED WITH -10 PROMOTER ELEMENT SSDNA: JRNL TITL 3 G-QUADRUPLEX FORMATION AND CRYSTAL PACKING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 9551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5222 - 6.8781 0.96 1349 150 0.2038 0.2162 REMARK 3 2 6.8781 - 5.4707 0.96 1271 141 0.2237 0.2598 REMARK 3 3 5.4707 - 4.7825 0.97 1242 139 0.2089 0.2394 REMARK 3 4 4.7825 - 4.3467 0.96 1222 135 0.2041 0.3225 REMARK 3 5 4.3467 - 4.0360 0.96 1212 136 0.2149 0.3037 REMARK 3 6 4.0360 - 3.7986 0.94 1179 130 0.2479 0.3322 REMARK 3 7 3.7986 - 3.6087 0.89 1116 129 0.3023 0.3990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21680 REMARK 3 B22 (A**2) : 1.21680 REMARK 3 B33 (A**2) : -2.43360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3912 REMARK 3 ANGLE : 0.713 5407 REMARK 3 CHIRALITY : 0.050 589 REMARK 3 PLANARITY : 0.003 615 REMARK 3 DIHEDRAL : 17.994 1517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (chain 'A' and resseq 93:270) or chain ' REMARK 3 D' or chain 'G' REMARK 3 SELECTION : (chain 'B' and resseq 93:270) or chain ' REMARK 3 E' or chain 'F' REMARK 3 ATOM PAIRS NUMBER : 1660 REMARK 3 RMSD : 0.010 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB074450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9821 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 25.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57800 REMARK 200 FOR SHELL : 3.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 200 STARTING MODEL: PDB ENTRY 1KU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8.5, 5% W/V PEG8000, REMARK 280 20% W/V PEG300, 10% V/V GLYCEROL, 0.15% W/V MELLITIC ACID, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.94067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.97033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 133.94067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.97033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 133.94067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 66.97033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 133.94067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.97033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 133.94067 REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 3 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 66.97033 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 66.97033 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K D 101 LIES ON A SPECIAL POSITION. REMARK 375 K K D 102 LIES ON A SPECIAL POSITION. REMARK 375 K K D 103 LIES ON A SPECIAL POSITION. REMARK 375 K K G 101 LIES ON A SPECIAL POSITION. REMARK 375 K K G 102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT E 1 REMARK 465 DT F 1 REMARK 465 DG F 2 REMARK 465 DT F 3 REMARK 465 DA F 4 REMARK 465 DC F 5 REMARK 465 DA F 6 REMARK 465 DA F 7 REMARK 465 DT F 8 REMARK 465 DT G 1 REMARK 465 DG G 2 REMARK 465 DT G 3 REMARK 465 DA G 4 REMARK 465 DC G 5 REMARK 465 DA G 6 REMARK 465 DA G 7 REMARK 465 DT G 8 REMARK 465 GLY A 88 REMARK 465 PRO A 89 REMARK 465 HIS A 90 REMARK 465 MET A 91 REMARK 465 THR A 92 REMARK 465 ARG A 271 REMARK 465 THR A 272 REMARK 465 ILE A 273 REMARK 465 ARG A 274 REMARK 465 ILE A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 HIS A 278 REMARK 465 MET A 279 REMARK 465 VAL A 280 REMARK 465 GLU A 281 REMARK 465 THR A 282 REMARK 465 ILE A 283 REMARK 465 ASN A 284 REMARK 465 LYS A 285 REMARK 465 LEU A 286 REMARK 465 SER A 287 REMARK 465 ARG A 288 REMARK 465 THR A 289 REMARK 465 ALA A 290 REMARK 465 ARG A 291 REMARK 465 GLN A 292 REMARK 465 LEU A 293 REMARK 465 GLN A 294 REMARK 465 GLN A 295 REMARK 465 GLU A 296 REMARK 465 LEU A 297 REMARK 465 GLY A 298 REMARK 465 ARG A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 SER A 302 REMARK 465 TYR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 ILE A 306 REMARK 465 ALA A 307 REMARK 465 GLU A 308 REMARK 465 ALA A 309 REMARK 465 MET A 310 REMARK 465 GLY A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 TRP A 314 REMARK 465 ASP A 315 REMARK 465 ALA A 316 REMARK 465 LYS A 317 REMARK 465 ARG A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 LYS A 324 REMARK 465 ILE A 325 REMARK 465 ALA A 326 REMARK 465 GLN A 327 REMARK 465 GLU A 328 REMARK 465 PRO A 329 REMARK 465 VAL A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 GLY B 88 REMARK 465 PRO B 89 REMARK 465 HIS B 90 REMARK 465 MET B 91 REMARK 465 THR B 92 REMARK 465 GLN B 327 REMARK 465 GLU B 328 REMARK 465 PRO B 329 REMARK 465 VAL B 330 REMARK 465 SER B 331 REMARK 465 LEU B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 93 CB OG REMARK 470 ASP A 94 CB CG OD1 OD2 REMARK 470 ARG A 97 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 102 CB CG CD OE1 OE2 REMARK 470 GLN A 157 CB CG CD OE1 NE2 REMARK 470 LYS A 158 CB CG CD CE NZ REMARK 470 LYS A 163 CB CG CD CE NZ REMARK 470 LYS A 165 CB CG CD CE NZ REMARK 470 GLU A 172 CB CG CD OE1 OE2 REMARK 470 LYS A 179 CB CG CD CE NZ REMARK 470 LEU A 181 CB CG CD1 CD2 REMARK 470 LYS A 183 CB CG CD CE NZ REMARK 470 GLU A 184 CB CG CD OE1 OE2 REMARK 470 LYS A 186 CB CG CD CE NZ REMARK 470 ARG A 187 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 216 CB CG CD CE NZ REMARK 470 SER B 93 CB OG REMARK 470 ASP B 94 CB CG OD1 OD2 REMARK 470 ARG B 97 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 102 CB CG CD OE1 OE2 REMARK 470 LYS B 158 CB CG CD CE NZ REMARK 470 LYS B 163 CB CG CD CE NZ REMARK 470 LYS B 165 CB CG CD CE NZ REMARK 470 GLU B 172 CB CG CD OE1 OE2 REMARK 470 LYS B 179 CB CG CD CE NZ REMARK 470 LEU B 181 CB CG CD1 CD2 REMARK 470 LYS B 183 CB CG CD CE NZ REMARK 470 GLU B 184 CB CG CD OE1 OE2 REMARK 470 LYS B 186 CB CG CD CE NZ REMARK 470 ARG B 187 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 216 CB CG CD CE NZ REMARK 470 ARG B 264 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 271 CG CD NE CZ NH1 NH2 REMARK 470 THR B 272 OG1 CG2 REMARK 470 ILE B 273 CG1 CG2 CD1 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 275 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 116 NZ LYS A 120 2.11 REMARK 500 OD1 ASP B 116 NZ LYS B 120 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA D 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 271 -119.19 59.07 REMARK 500 ARG B 274 -4.28 84.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG B 274 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 11 O6 REMARK 620 2 DG G 10 O6 84.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 9 O6 REMARK 620 2 DG G 11 O6 74.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 10 O6 REMARK 620 2 DG G 9 O6 87.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 11 O6 REMARK 620 2 DG D 10 O6 69.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 10 O6 REMARK 620 2 DG D 9 O6 77.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K G 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UGO RELATED DB: PDB REMARK 900 RELATED ID: 3UGP RELATED DB: PDB DBREF 4GOR A 92 332 UNP Q9EZJ8 Q9EZJ8_THEAQ 92 332 DBREF 4GOR B 92 332 UNP Q9EZJ8 Q9EZJ8_THEAQ 92 332 DBREF 4GOR D 1 11 PDB 4GOR 4GOR 1 11 DBREF 4GOR E 1 11 PDB 4GOR 4GOR 1 11 DBREF 4GOR F 1 11 PDB 4GOR 4GOR 1 11 DBREF 4GOR G 1 11 PDB 4GOR 4GOR 1 11 SEQADV 4GOR GLY A 88 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR PRO A 89 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR HIS A 90 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR MET A 91 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR GLY B 88 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR PRO B 89 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR HIS B 90 UNP Q9EZJ8 EXPRESSION TAG SEQADV 4GOR MET B 91 UNP Q9EZJ8 EXPRESSION TAG SEQRES 1 D 11 DT DG DT DA DC DA DA DT DG DG DG SEQRES 1 E 11 DT DG DT DA DC DA DA DT DG DG DG SEQRES 1 F 11 DT DG DT DA DC DA DA DT DG DG DG SEQRES 1 G 11 DT DG DT DA DC DA DA DT DG DG DG SEQRES 1 A 245 GLY PRO HIS MET THR SER ASP PRO VAL ARG GLN TYR LEU SEQRES 2 A 245 HIS GLU ILE GLY GLN VAL PRO LEU LEU THR LEU GLU GLU SEQRES 3 A 245 GLU ILE ASP LEU ALA ARG LYS VAL GLU GLU GLY MET GLU SEQRES 4 A 245 ALA ILE LYS LYS LEU SER GLU ALA THR GLY LEU ASP GLN SEQRES 5 A 245 GLU LEU ILE ARG GLU VAL VAL ARG ALA LYS ILE LEU GLY SEQRES 6 A 245 THR ALA ARG ILE GLN LYS ILE PRO GLY LEU LYS GLU LYS SEQRES 7 A 245 PRO ASP PRO LYS THR VAL GLU GLU VAL ASP GLY LYS LEU SEQRES 8 A 245 LYS SER LEU PRO LYS GLU LEU LYS ARG TYR LEU HIS ILE SEQRES 9 A 245 ALA ARG GLU GLY GLU ALA ALA ARG GLN HIS LEU ILE GLU SEQRES 10 A 245 ALA ASN LEU ARG LEU VAL VAL SER ILE ALA LYS LYS TYR SEQRES 11 A 245 THR GLY ARG GLY LEU SER PHE LEU ASP LEU ILE GLN GLU SEQRES 12 A 245 GLY ASN GLN GLY LEU ILE ARG ALA VAL GLU LYS PHE GLU SEQRES 13 A 245 TYR LYS ARG ARG PHE LYS PHE SER THR TYR ALA THR TRP SEQRES 14 A 245 TRP ILE ARG GLN ALA ILE ASN ARG ALA ILE ALA ASP GLN SEQRES 15 A 245 ALA ARG THR ILE ARG ILE PRO VAL HIS MET VAL GLU THR SEQRES 16 A 245 ILE ASN LYS LEU SER ARG THR ALA ARG GLN LEU GLN GLN SEQRES 17 A 245 GLU LEU GLY ARG GLU PRO SER TYR GLU GLU ILE ALA GLU SEQRES 18 A 245 ALA MET GLY PRO GLY TRP ASP ALA LYS ARG VAL GLU GLU SEQRES 19 A 245 THR LEU LYS ILE ALA GLN GLU PRO VAL SER LEU SEQRES 1 B 245 GLY PRO HIS MET THR SER ASP PRO VAL ARG GLN TYR LEU SEQRES 2 B 245 HIS GLU ILE GLY GLN VAL PRO LEU LEU THR LEU GLU GLU SEQRES 3 B 245 GLU ILE ASP LEU ALA ARG LYS VAL GLU GLU GLY MET GLU SEQRES 4 B 245 ALA ILE LYS LYS LEU SER GLU ALA THR GLY LEU ASP GLN SEQRES 5 B 245 GLU LEU ILE ARG GLU VAL VAL ARG ALA LYS ILE LEU GLY SEQRES 6 B 245 THR ALA ARG ILE GLN LYS ILE PRO GLY LEU LYS GLU LYS SEQRES 7 B 245 PRO ASP PRO LYS THR VAL GLU GLU VAL ASP GLY LYS LEU SEQRES 8 B 245 LYS SER LEU PRO LYS GLU LEU LYS ARG TYR LEU HIS ILE SEQRES 9 B 245 ALA ARG GLU GLY GLU ALA ALA ARG GLN HIS LEU ILE GLU SEQRES 10 B 245 ALA ASN LEU ARG LEU VAL VAL SER ILE ALA LYS LYS TYR SEQRES 11 B 245 THR GLY ARG GLY LEU SER PHE LEU ASP LEU ILE GLN GLU SEQRES 12 B 245 GLY ASN GLN GLY LEU ILE ARG ALA VAL GLU LYS PHE GLU SEQRES 13 B 245 TYR LYS ARG ARG PHE LYS PHE SER THR TYR ALA THR TRP SEQRES 14 B 245 TRP ILE ARG GLN ALA ILE ASN ARG ALA ILE ALA ASP GLN SEQRES 15 B 245 ALA ARG THR ILE ARG ILE PRO VAL HIS MET VAL GLU THR SEQRES 16 B 245 ILE ASN LYS LEU SER ARG THR ALA ARG GLN LEU GLN GLN SEQRES 17 B 245 GLU LEU GLY ARG GLU PRO SER TYR GLU GLU ILE ALA GLU SEQRES 18 B 245 ALA MET GLY PRO GLY TRP ASP ALA LYS ARG VAL GLU GLU SEQRES 19 B 245 THR LEU LYS ILE ALA GLN GLU PRO VAL SER LEU HET K D 101 1 HET K D 102 1 HET K D 103 1 HET K G 101 1 HET K G 102 1 HETNAM K POTASSIUM ION FORMUL 7 K 5(K 1+) HELIX 1 1 SER A 93 GLN A 105 1 13 HELIX 2 2 THR A 110 GLY A 136 1 27 HELIX 3 3 ASP A 138 LEU A 151 1 14 HELIX 4 4 GLY A 152 ALA A 154 5 3 HELIX 5 5 ASP A 167 SER A 180 1 14 HELIX 6 6 LEU A 185 LYS A 215 1 31 HELIX 7 7 LYS A 216 THR A 218 5 3 HELIX 8 8 SER A 223 PHE A 242 1 20 HELIX 9 9 GLU A 243 ARG A 247 5 5 HELIX 10 10 LYS A 249 ASP A 268 1 20 HELIX 11 11 ASP B 94 GLN B 105 1 12 HELIX 12 12 THR B 110 GLY B 136 1 27 HELIX 13 13 ASP B 138 LEU B 151 1 14 HELIX 14 14 GLY B 152 ALA B 154 5 3 HELIX 15 15 ASP B 167 SER B 180 1 14 HELIX 16 16 LEU B 185 LYS B 215 1 31 HELIX 17 17 LYS B 216 THR B 218 5 3 HELIX 18 18 SER B 223 PHE B 242 1 20 HELIX 19 19 GLU B 243 ARG B 247 5 5 HELIX 20 20 LYS B 249 ASP B 268 1 20 HELIX 21 21 VAL B 277 LEU B 293 1 17 HELIX 22 22 SER B 302 MET B 310 1 9 HELIX 23 23 ASP B 315 LEU B 323 1 9 HELIX 24 24 LYS B 324 ALA B 326 5 3 LINK O6 DG G 11 K K G 101 1555 1555 2.68 LINK O6 DG D 9 K K D 103 1555 1555 2.69 LINK O6 DG G 10 K K G 101 1555 1555 2.70 LINK O6 DG G 10 K K G 102 1555 1555 2.72 LINK O6 DG G 11 K K D 103 1555 1555 2.76 LINK O6 DG G 9 K K G 102 1555 1555 2.77 LINK O6 DG D 11 K K D 101 1555 1555 2.77 LINK O6 DG D 10 K K D 101 1555 1555 2.81 LINK O6 DG D 10 K K D 102 1555 1555 2.84 LINK O6 DG D 9 K K D 102 1555 1555 2.88 CISPEP 1 ILE B 273 ARG B 274 0 4.91 CISPEP 2 GLY B 311 PRO B 312 0 -2.16 SITE 1 AC1 5 DG D 10 DG D 11 K D 102 DG E 10 SITE 2 AC1 5 DG E 11 SITE 1 AC2 6 DG D 9 DG D 10 K D 101 K D 103 SITE 2 AC2 6 DG E 9 DG E 10 SITE 1 AC3 6 DG D 9 K D 102 DG E 9 DG F 11 SITE 2 AC3 6 DG G 11 K G 101 SITE 1 AC4 6 K D 103 DG F 10 DG F 11 DG G 10 SITE 2 AC4 6 DG G 11 K G 102 SITE 1 AC5 5 DG F 9 DG F 10 DG G 9 DG G 10 SITE 2 AC5 5 K G 101 CRYST1 118.085 118.085 200.911 90.00 90.00 120.00 P 62 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008468 0.004889 0.000000 0.00000 SCALE2 0.000000 0.009779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004977 0.00000