HEADER ISOMERASE, HYDROLASE 22-AUG-12 4GPZ TITLE CRYSTAL STRUCTURE OF HUMAN B TYPE PHOSPHOGLYCERATE MUTASE H11 TITLE 2 PHOSPHORYLATED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE MUTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN TYPE B PHOSPHOGLYCERATE MUTASE; COMPND 5 SYNONYM: BPG-DEPENDENT PGAM 1, PHOSPHOGLYCERATE MUTASE ISOZYME B, COMPND 6 PGAM-B; COMPND 7 EC: 3.1.3.13, 5.4.2.1, 5.4.2.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PGAM1, PGAMA, CDABP0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA, ISOMERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,L.ZHOU,L.ZHANG REVDAT 3 13-SEP-23 4GPZ 1 REMARK SEQADV REVDAT 2 17-JUL-19 4GPZ 1 REMARK LINK REVDAT 1 22-MAY-13 4GPZ 0 JRNL AUTH T.HITOSUGI,L.ZHOU,J.FAN,S.ELF,L.ZHANG,J.XIE,Y.WANG,T.L.GU, JRNL AUTH 2 M.ALECKOVIC,G.LEROY,Y.KANG,H.B.KANG,J.H.SEO,C.SHAN,P.JIN, JRNL AUTH 3 W.GONG,S.LONIAL,M.L.ARELLANO,H.J.KHOURY,G.Z.CHEN,D.M.SHIN, JRNL AUTH 4 F.R.KHURI,T.J.BOGGON,S.KANG,C.HE,J.CHEN JRNL TITL TYR26 PHOSPHORYLATION OF PGAM1 PROVIDES A METABOLIC JRNL TITL 2 ADVANTAGE TO TUMOURS BY STABILIZING THE ACTIVE CONFORMATION. JRNL REF NAT COMMUN V. 4 1790 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23653202 JRNL DOI 10.1038/NCOMMS2759 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.29000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3966 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5384 ; 2.471 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.924 ;23.617 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;13.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;12.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.303 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3027 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 60.478 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 1YFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES, PH 6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.58700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.58700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 244 REMARK 465 ALA A 245 REMARK 465 VAL A 246 REMARK 465 ALA A 247 REMARK 465 ALA A 248 REMARK 465 GLN A 249 REMARK 465 GLY A 250 REMARK 465 LYS A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 465 LYS A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 MET B 1 REMARK 465 GLU B 237 REMARK 465 THR B 238 REMARK 465 VAL B 239 REMARK 465 ARG B 240 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 465 MET B 243 REMARK 465 GLU B 244 REMARK 465 ALA B 245 REMARK 465 VAL B 246 REMARK 465 ALA B 247 REMARK 465 ALA B 248 REMARK 465 GLN B 249 REMARK 465 GLY B 250 REMARK 465 LYS B 251 REMARK 465 ALA B 252 REMARK 465 LYS B 253 REMARK 465 LYS B 254 REMARK 465 LEU B 255 REMARK 465 GLU B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 412 O HOH B 447 1.94 REMARK 500 OH TYR B 92 O HOH B 429 2.02 REMARK 500 O HOH B 443 O HOH B 474 2.05 REMARK 500 O HOH A 503 O HOH A 599 2.12 REMARK 500 O HOH B 399 O HOH B 461 2.12 REMARK 500 O HOH B 471 O HOH B 473 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 14 CB SER A 14 OG 0.084 REMARK 500 TRP A 78 CE3 TRP A 78 CZ3 0.115 REMARK 500 GLU B 127 CD GLU B 127 OE2 0.072 REMARK 500 ARG B 140 CZ ARG B 140 NH2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 185 -132.85 -148.66 REMARK 500 ILE B 136 -60.37 -105.87 REMARK 500 ALA B 185 -137.71 -148.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YFK RELATED DB: PDB REMARK 900 IT IS THE CRYSTAL STRUCTURE OF HUMAN B TYPE PHOSPHOGLYCERATE MUTASE REMARK 900 COMPLEXED WITH CITRATE DBREF 4GPZ A 1 254 UNP P18669 PGAM1_HUMAN 1 254 DBREF 4GPZ B 1 254 UNP P18669 PGAM1_HUMAN 1 254 SEQADV 4GPZ LEU A 255 UNP P18669 EXPRESSION TAG SEQADV 4GPZ GLU A 256 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 257 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 258 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 259 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 260 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 261 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS A 262 UNP P18669 EXPRESSION TAG SEQADV 4GPZ LEU B 255 UNP P18669 EXPRESSION TAG SEQADV 4GPZ GLU B 256 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 257 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 258 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 259 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 260 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 261 UNP P18669 EXPRESSION TAG SEQADV 4GPZ HIS B 262 UNP P18669 EXPRESSION TAG SEQRES 1 A 262 MET ALA ALA TYR LYS LEU VAL LEU ILE ARG NEP GLY GLU SEQRES 2 A 262 SER ALA TRP ASN LEU GLU ASN ARG PHE SER GLY TRP TYR SEQRES 3 A 262 ASP ALA ASP LEU SER PRO ALA GLY HIS GLU GLU ALA LYS SEQRES 4 A 262 ARG GLY GLY GLN ALA LEU ARG ASP ALA GLY TYR GLU PHE SEQRES 5 A 262 ASP ILE CYS PHE THR SER VAL GLN LYS ARG ALA ILE ARG SEQRES 6 A 262 THR LEU TRP THR VAL LEU ASP ALA ILE ASP GLN MET TRP SEQRES 7 A 262 LEU PRO VAL VAL ARG THR TRP ARG LEU ASN GLU ARG HIS SEQRES 8 A 262 TYR GLY GLY LEU THR GLY LEU ASN LYS ALA GLU THR ALA SEQRES 9 A 262 ALA LYS HIS GLY GLU ALA GLN VAL LYS ILE TRP ARG ARG SEQRES 10 A 262 SER TYR ASP VAL PRO PRO PRO PRO MET GLU PRO ASP HIS SEQRES 11 A 262 PRO PHE TYR SER ASN ILE SER LYS ASP ARG ARG TYR ALA SEQRES 12 A 262 ASP LEU THR GLU ASP GLN LEU PRO SER CYS GLU SER LEU SEQRES 13 A 262 LYS ASP THR ILE ALA ARG ALA LEU PRO PHE TRP ASN GLU SEQRES 14 A 262 GLU ILE VAL PRO GLN ILE LYS GLU GLY LYS ARG VAL LEU SEQRES 15 A 262 ILE ALA ALA HIS GLY ASN SER LEU ARG GLY ILE VAL LYS SEQRES 16 A 262 HIS LEU GLU GLY LEU SER GLU GLU ALA ILE MET GLU LEU SEQRES 17 A 262 ASN LEU PRO THR GLY ILE PRO ILE VAL TYR GLU LEU ASP SEQRES 18 A 262 LYS ASN LEU LYS PRO ILE LYS PRO MET GLN PHE LEU GLY SEQRES 19 A 262 ASP GLU GLU THR VAL ARG LYS ALA MET GLU ALA VAL ALA SEQRES 20 A 262 ALA GLN GLY LYS ALA LYS LYS LEU GLU HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS SEQRES 1 B 262 MET ALA ALA TYR LYS LEU VAL LEU ILE ARG NEP GLY GLU SEQRES 2 B 262 SER ALA TRP ASN LEU GLU ASN ARG PHE SER GLY TRP TYR SEQRES 3 B 262 ASP ALA ASP LEU SER PRO ALA GLY HIS GLU GLU ALA LYS SEQRES 4 B 262 ARG GLY GLY GLN ALA LEU ARG ASP ALA GLY TYR GLU PHE SEQRES 5 B 262 ASP ILE CYS PHE THR SER VAL GLN LYS ARG ALA ILE ARG SEQRES 6 B 262 THR LEU TRP THR VAL LEU ASP ALA ILE ASP GLN MET TRP SEQRES 7 B 262 LEU PRO VAL VAL ARG THR TRP ARG LEU ASN GLU ARG HIS SEQRES 8 B 262 TYR GLY GLY LEU THR GLY LEU ASN LYS ALA GLU THR ALA SEQRES 9 B 262 ALA LYS HIS GLY GLU ALA GLN VAL LYS ILE TRP ARG ARG SEQRES 10 B 262 SER TYR ASP VAL PRO PRO PRO PRO MET GLU PRO ASP HIS SEQRES 11 B 262 PRO PHE TYR SER ASN ILE SER LYS ASP ARG ARG TYR ALA SEQRES 12 B 262 ASP LEU THR GLU ASP GLN LEU PRO SER CYS GLU SER LEU SEQRES 13 B 262 LYS ASP THR ILE ALA ARG ALA LEU PRO PHE TRP ASN GLU SEQRES 14 B 262 GLU ILE VAL PRO GLN ILE LYS GLU GLY LYS ARG VAL LEU SEQRES 15 B 262 ILE ALA ALA HIS GLY ASN SER LEU ARG GLY ILE VAL LYS SEQRES 16 B 262 HIS LEU GLU GLY LEU SER GLU GLU ALA ILE MET GLU LEU SEQRES 17 B 262 ASN LEU PRO THR GLY ILE PRO ILE VAL TYR GLU LEU ASP SEQRES 18 B 262 LYS ASN LEU LYS PRO ILE LYS PRO MET GLN PHE LEU GLY SEQRES 19 B 262 ASP GLU GLU THR VAL ARG LYS ALA MET GLU ALA VAL ALA SEQRES 20 B 262 ALA GLN GLY LYS ALA LYS LYS LEU GLU HIS HIS HIS HIS SEQRES 21 B 262 HIS HIS MODRES 4GPZ NEP A 11 HIS N1-PHOSPHONOHISTIDINE MODRES 4GPZ NEP B 11 HIS N1-PHOSPHONOHISTIDINE HET NEP A 11 14 HET NEP B 11 14 HET CL A 301 1 HET MES A 302 12 HET MES A 303 12 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM CL CHLORIDE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 CL CL 1- FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 6 HOH *386(H2 O) HELIX 1 1 SER A 31 ALA A 48 1 18 HELIX 2 2 GLN A 60 ILE A 74 1 15 HELIX 3 3 TRP A 85 ASN A 88 5 4 HELIX 4 4 TYR A 92 THR A 96 5 5 HELIX 5 5 ASN A 99 GLY A 108 1 10 HELIX 6 6 GLY A 108 SER A 118 1 11 HELIX 7 7 PHE A 132 LYS A 138 1 7 HELIX 8 8 ASP A 139 ALA A 143 5 5 HELIX 9 9 SER A 155 ILE A 171 1 17 HELIX 10 10 ILE A 171 GLU A 177 1 7 HELIX 11 11 HIS A 186 GLY A 199 1 14 HELIX 12 12 SER A 201 LEU A 208 1 8 HELIX 13 13 ASP A 235 MET A 243 1 9 HELIX 14 14 SER B 14 GLU B 19 1 6 HELIX 15 15 SER B 31 ALA B 48 1 18 HELIX 16 16 GLN B 60 ILE B 74 1 15 HELIX 17 17 TRP B 85 ASN B 88 5 4 HELIX 18 18 TYR B 92 THR B 96 5 5 HELIX 19 19 ASN B 99 GLY B 108 1 10 HELIX 20 20 GLY B 108 SER B 118 1 11 HELIX 21 21 PHE B 132 LYS B 138 1 7 HELIX 22 22 ASP B 139 ALA B 143 5 5 HELIX 23 23 SER B 155 ILE B 171 1 17 HELIX 24 24 ILE B 171 GLU B 177 1 7 HELIX 25 25 HIS B 186 GLY B 199 1 14 HELIX 26 26 SER B 201 LEU B 208 1 8 SHEET 1 A 6 VAL A 81 ARG A 83 0 SHEET 2 A 6 ILE A 54 THR A 57 1 N CYS A 55 O VAL A 82 SHEET 3 A 6 VAL A 181 ALA A 185 1 O ALA A 184 N PHE A 56 SHEET 4 A 6 TYR A 4 ARG A 10 1 N ILE A 9 O ILE A 183 SHEET 5 A 6 ILE A 216 LEU A 220 -1 O ILE A 216 N LEU A 8 SHEET 6 A 6 GLN A 231 PHE A 232 -1 O GLN A 231 N VAL A 217 SHEET 1 B 6 VAL B 81 ARG B 83 0 SHEET 2 B 6 ILE B 54 THR B 57 1 N CYS B 55 O VAL B 82 SHEET 3 B 6 VAL B 181 ALA B 185 1 O LEU B 182 N PHE B 56 SHEET 4 B 6 TYR B 4 ARG B 10 1 N VAL B 7 O ILE B 183 SHEET 5 B 6 ILE B 216 LEU B 220 -1 O ILE B 216 N LEU B 8 SHEET 6 B 6 GLN B 231 PHE B 232 -1 O GLN B 231 N VAL B 217 LINK C ARG A 10 N NEP A 11 1555 1555 1.36 LINK C NEP A 11 N GLY A 12 1555 1555 1.32 LINK C ARG B 10 N NEP B 11 1555 1555 1.33 LINK C NEP B 11 N GLY B 12 1555 1555 1.36 SITE 1 AC1 4 TRP A 68 ARG A 83 TRP B 68 ARG B 83 SITE 1 AC2 11 NEP A 11 ASN A 17 ARG A 21 PHE A 22 SITE 2 AC2 11 SER A 23 GLY A 24 ARG A 62 GLU A 89 SITE 3 AC2 11 TYR A 92 LYS A 100 HOH A 454 SITE 1 AC3 9 ALA A 44 ASP A 47 GLY A 234 HOH A 514 SITE 2 AC3 9 HOH A 533 HOH A 585 PRO B 125 GLU B 127 SITE 3 AC3 9 SER B 152 CRYST1 77.360 81.174 90.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012927 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011064 0.00000