HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 22-AUG-12 4GQ3 TITLE HUMAN MENIN WITH BOUND INHIBITOR MI-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEN1, SCG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TUMOR SUPPRESSOR, NUCLEUS, TRANSCRIPTION-TRANSCRIPTION INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SHI,M.J.MURAI,S.HE,G.L.LUND,T.HARTLEY,T.PUROHIT,G.REDDY,M.CHRUSZCZ, AUTHOR 2 J.GREMBECKA,T.CIERPICKI REVDAT 4 13-SEP-23 4GQ3 1 REMARK SEQADV REVDAT 3 02-JAN-13 4GQ3 1 JRNL REVDAT 2 10-OCT-12 4GQ3 1 HETATM REVDAT 1 19-SEP-12 4GQ3 0 JRNL AUTH A.SHI,M.J.MURAI,S.HE,G.LUND,T.HARTLEY,T.PUROHIT,G.REDDY, JRNL AUTH 2 M.CHRUSZCZ,J.GREMBECKA,T.CIERPICKI JRNL TITL STRUCTURAL INSIGHTS INTO INHIBITION OF THE BIVALENT JRNL TITL 2 MENIN-MLL INTERACTION BY SMALL MOLECULES IN LEUKEMIA. JRNL REF BLOOD V. 120 4461 2012 JRNL REFN ISSN 0006-4971 JRNL PMID 22936661 JRNL DOI 10.1182/BLOOD-2012-05-429274 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 57379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3899 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5302 ; 1.666 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;31.908 ;23.743 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;12.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.356 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 581 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2962 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; NULL REMARK 200 BEAMLINE : 21-ID-D; 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 39.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3RE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M HEPES PH REMARK 280 7.5 AND 25% W/V PEG 3,350. THIS SOLUTION WAS MIXED 1:1 WITH REMARK 280 2.5MG/ML PROTEIN IN 50MM TRIS-HCL (PH 8.0), 50MM NACL, AND 1MM REMARK 280 TCEP. PRIOR TO DATA COLLECTION, CRYSTALS WERE TRANSFERRED INTO A REMARK 280 CRYO-SOLUTION CONTAINING 20% PEG550 MME AND FLASH-FROZEN IN REMARK 280 LIQUID NITROGEN, 200 MM 0RO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.40250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.06050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.40250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.06050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 537 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 PRO A 540 REMARK 465 ALA A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 PRO A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 GLU A 547 REMARK 465 LYS A 589 REMARK 465 GLN A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 GLY A 548 N CA REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 LYS A 588 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 606 UNK UNX A 607 1.80 REMARK 500 UNK UNX A 603 UNK UNX A 606 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 -62.53 -152.00 REMARK 500 ASP A 180 10.44 -141.72 REMARK 500 SER A 226 39.04 -88.70 REMARK 500 GLU A 356 -1.04 92.54 REMARK 500 ASP A 370 -56.51 -136.19 REMARK 500 GLN A 586 118.16 -38.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0RO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GPQ RELATED DB: PDB REMARK 900 RELATED ID: 4GQ4 RELATED DB: PDB REMARK 900 RELATED ID: 4GQ6 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CRYSTALLIZED SEQUENCE CORRESPONDS TO THE HUMAN MENIN ISOFORM 2 DBREF 4GQ3 A 1 593 UNP O00255 MEN1_HUMAN 1 593 SEQADV 4GQ3 GLY A -4 UNP O00255 EXPRESSION TAG SEQADV 4GQ3 GLY A -3 UNP O00255 EXPRESSION TAG SEQADV 4GQ3 SER A -2 UNP O00255 EXPRESSION TAG SEQADV 4GQ3 SER A -1 UNP O00255 EXPRESSION TAG SEQADV 4GQ3 SER A 0 UNP O00255 EXPRESSION TAG SEQADV 4GQ3 A UNP O00255 ILE 54 DELETION SEQADV 4GQ3 A UNP O00255 PRO 55 DELETION SEQADV 4GQ3 A UNP O00255 THR 56 DELETION SEQADV 4GQ3 A UNP O00255 ASN 57 DELETION SEQADV 4GQ3 A UNP O00255 VAL 58 DELETION SEQADV 4GQ3 A UNP O00255 PRO 59 DELETION SEQADV 4GQ3 A UNP O00255 GLU 60 DELETION SEQADV 4GQ3 A UNP O00255 LEU 61 DELETION SEQADV 4GQ3 A UNP O00255 THR 62 DELETION SEQADV 4GQ3 A UNP O00255 PHE 63 DELETION SEQADV 4GQ3 A UNP O00255 GLN 64 DELETION SEQADV 4GQ3 A UNP O00255 PRO 65 DELETION SEQADV 4GQ3 A UNP O00255 SER 66 DELETION SEQADV 4GQ3 A UNP O00255 PRO 67 DELETION SEQADV 4GQ3 A UNP O00255 ALA 68 DELETION SEQADV 4GQ3 A UNP O00255 PRO 69 DELETION SEQADV 4GQ3 A UNP O00255 ASP 70 DELETION SEQADV 4GQ3 A UNP O00255 PRO 71 DELETION SEQADV 4GQ3 A UNP O00255 PRO 72 DELETION SEQADV 4GQ3 A UNP O00255 GLY 73 DELETION SEQADV 4GQ3 A UNP O00255 GLU 387 DELETION SEQADV 4GQ3 A UNP O00255 GLU 388 DELETION SEQADV 4GQ3 A UNP O00255 ARG 389 DELETION SEQADV 4GQ3 A UNP O00255 PRO 390 DELETION SEQADV 4GQ3 A UNP O00255 GLY 391 DELETION SEQADV 4GQ3 A UNP O00255 GLU 392 DELETION SEQADV 4GQ3 A UNP O00255 GLN 393 DELETION SEQADV 4GQ3 A UNP O00255 SER 394 DELETION SEQADV 4GQ3 A UNP O00255 GLN 395 DELETION SEQADV 4GQ3 A UNP O00255 GLY 396 DELETION SEQADV 4GQ3 A UNP O00255 THR 397 DELETION SEQADV 4GQ3 A UNP O00255 GLN 398 DELETION SEQADV 4GQ3 A UNP O00255 ARG 460 DELETION SEQADV 4GQ3 A UNP O00255 GLU 461 DELETION SEQADV 4GQ3 A UNP O00255 ALA 462 DELETION SEQADV 4GQ3 A UNP O00255 GLU 463 DELETION SEQADV 4GQ3 A UNP O00255 ALA 464 DELETION SEQADV 4GQ3 A UNP O00255 ALA 465 DELETION SEQADV 4GQ3 A UNP O00255 GLU 466 DELETION SEQADV 4GQ3 A UNP O00255 ALA 467 DELETION SEQADV 4GQ3 A UNP O00255 GLU 468 DELETION SEQADV 4GQ3 A UNP O00255 GLU 469 DELETION SEQADV 4GQ3 A UNP O00255 PRO 470 DELETION SEQADV 4GQ3 A UNP O00255 TRP 471 DELETION SEQADV 4GQ3 A UNP O00255 GLY 472 DELETION SEQADV 4GQ3 A UNP O00255 GLU 473 DELETION SEQADV 4GQ3 A UNP O00255 GLU 474 DELETION SEQADV 4GQ3 A UNP O00255 ALA 475 DELETION SEQADV 4GQ3 A UNP O00255 ARG 476 DELETION SEQADV 4GQ3 A UNP O00255 GLU 477 DELETION SEQADV 4GQ3 A UNP O00255 GLY 478 DELETION SEQADV 4GQ3 A UNP O00255 ARG 479 DELETION SEQADV 4GQ3 A UNP O00255 ARG 480 DELETION SEQADV 4GQ3 A UNP O00255 ARG 481 DELETION SEQADV 4GQ3 A UNP O00255 GLY 482 DELETION SEQADV 4GQ3 A UNP O00255 PRO 483 DELETION SEQADV 4GQ3 A UNP O00255 ARG 484 DELETION SEQADV 4GQ3 A UNP O00255 ARG 485 DELETION SEQADV 4GQ3 A UNP O00255 GLU 486 DELETION SEQADV 4GQ3 A UNP O00255 SER 487 DELETION SEQADV 4GQ3 A UNP O00255 LYS 488 DELETION SEQADV 4GQ3 A UNP O00255 PRO 489 DELETION SEQADV 4GQ3 A UNP O00255 GLU 490 DELETION SEQADV 4GQ3 A UNP O00255 GLU 491 DELETION SEQADV 4GQ3 A UNP O00255 PRO 492 DELETION SEQADV 4GQ3 A UNP O00255 PRO 493 DELETION SEQADV 4GQ3 A UNP O00255 PRO 494 DELETION SEQADV 4GQ3 A UNP O00255 PRO 495 DELETION SEQADV 4GQ3 A UNP O00255 LYS 496 DELETION SEQADV 4GQ3 A UNP O00255 LYS 497 DELETION SEQADV 4GQ3 A UNP O00255 PRO 498 DELETION SEQADV 4GQ3 A UNP O00255 ALA 499 DELETION SEQADV 4GQ3 A UNP O00255 LEU 500 DELETION SEQADV 4GQ3 A UNP O00255 ASP 501 DELETION SEQADV 4GQ3 A UNP O00255 LYS 502 DELETION SEQADV 4GQ3 A UNP O00255 GLY 503 DELETION SEQADV 4GQ3 A UNP O00255 LEU 504 DELETION SEQADV 4GQ3 A UNP O00255 GLY 505 DELETION SEQADV 4GQ3 A UNP O00255 THR 506 DELETION SEQADV 4GQ3 A UNP O00255 GLY 507 DELETION SEQADV 4GQ3 A UNP O00255 GLN 508 DELETION SEQADV 4GQ3 A UNP O00255 GLY 509 DELETION SEQADV 4GQ3 A UNP O00255 ALA 510 DELETION SEQADV 4GQ3 A UNP O00255 VAL 511 DELETION SEQADV 4GQ3 A UNP O00255 SER 512 DELETION SEQADV 4GQ3 A UNP O00255 GLY 513 DELETION SEQADV 4GQ3 A UNP O00255 PRO 514 DELETION SEQADV 4GQ3 A UNP O00255 PRO 515 DELETION SEQADV 4GQ3 A UNP O00255 ARG 516 DELETION SEQADV 4GQ3 A UNP O00255 LYS 517 DELETION SEQADV 4GQ3 A UNP O00255 PRO 518 DELETION SEQADV 4GQ3 A UNP O00255 PRO 519 DELETION SEQADV 4GQ3 A UNP O00255 GLY 520 DELETION SEQADV 4GQ3 A UNP O00255 THR 521 DELETION SEQADV 4GQ3 A UNP O00255 VAL 522 DELETION SEQADV 4GQ3 A UNP O00255 ALA 523 DELETION SEQADV 4GQ3 A UNP O00255 GLY 524 DELETION SEQADV 4GQ3 A UNP O00255 THR 525 DELETION SEQADV 4GQ3 A UNP O00255 ALA 526 DELETION SEQADV 4GQ3 A UNP O00255 ARG 527 DELETION SEQADV 4GQ3 A UNP O00255 GLY 528 DELETION SEQADV 4GQ3 A UNP O00255 PRO 529 DELETION SEQADV 4GQ3 A UNP O00255 GLU 530 DELETION SEQADV 4GQ3 A UNP O00255 GLY 531 DELETION SEQADV 4GQ3 A UNP O00255 GLY 532 DELETION SEQADV 4GQ3 A UNP O00255 SER 533 DELETION SEQADV 4GQ3 A UNP O00255 THR 534 DELETION SEQADV 4GQ3 A UNP O00255 ALA 535 DELETION SEQADV 4GQ3 A UNP O00255 GLN 536 DELETION SEQADV 4GQ3 ALA A 541 UNP O00255 THR 541 ENGINEERED MUTATION SEQRES 1 A 489 GLY GLY SER SER SER MET GLY LEU LYS ALA ALA GLN LYS SEQRES 2 A 489 THR LEU PHE PRO LEU ARG SER ILE ASP ASP VAL VAL ARG SEQRES 3 A 489 LEU PHE ALA ALA GLU LEU GLY ARG GLU GLU PRO ASP LEU SEQRES 4 A 489 VAL LEU LEU SER LEU VAL LEU GLY PHE VAL GLU HIS PHE SEQRES 5 A 489 LEU ALA VAL ASN ARG VAL GLY LEU THR TYR PHE PRO VAL SEQRES 6 A 489 ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG PHE SEQRES 7 A 489 THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU TYR SEQRES 8 A 489 PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL LYS SEQRES 9 A 489 LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SER SEQRES 10 A 489 TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SER SEQRES 11 A 489 PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL ALA SEQRES 12 A 489 PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU ARG SEQRES 13 A 489 ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP VAL SEQRES 14 A 489 VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL THR SEQRES 15 A 489 TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN THR SEQRES 16 A 489 VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR LEU SEQRES 17 A 489 LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU VAL SEQRES 18 A 489 ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP LEU SEQRES 19 A 489 HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN LYS SEQRES 20 A 489 LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU ARG SEQRES 21 A 489 TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU GLU SEQRES 22 A 489 LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR LEU SEQRES 23 A 489 TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR ARG SEQRES 24 A 489 ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA GLY TYR SEQRES 25 A 489 HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN ALA SEQRES 26 A 489 TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN TYR SEQRES 27 A 489 CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE GLU SEQRES 28 A 489 VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU ALA SEQRES 29 A 489 ALA SER LEU LEU GLU ALA GLY SER GLN GLY SER ALA LEU SEQRES 30 A 489 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 31 A 489 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 32 A 489 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 33 A 489 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 34 A 489 ILE VAL SER VAL PRO ALA PRO ALA ALA SER PRO PRO PRO SEQRES 35 A 489 GLU GLY PRO VAL LEU THR PHE GLN SER GLU LYS MET LYS SEQRES 36 A 489 GLY MET LYS GLU LEU LEU VAL ALA THR LYS ILE ASN SER SEQRES 37 A 489 SER ALA ILE LYS LEU GLN LEU THR ALA GLN SER GLN VAL SEQRES 38 A 489 GLN MET LYS LYS GLN LYS VAL SER HET 0RO A 601 25 HET PEG A 602 7 HET UNX A 603 1 HET UNX A 604 1 HET UNX A 605 1 HET UNX A 606 1 HET UNX A 607 1 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HETNAM 0RO 4-[4-(5,5-DIMETHYL-4,5-DIHYDRO-1,3-THIAZOL-2-YL) HETNAM 2 0RO PIPERAZIN-1-YL]-6-PROPYLTHIENO[2,3-D]PYRIMIDINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION FORMUL 2 0RO C18 H25 N5 S2 FORMUL 3 PEG C4 H10 O3 FORMUL 4 UNX 5(X) FORMUL 9 SO4 5(O4 S 2-) FORMUL 14 HOH *370(H2 O) HELIX 1 1 LYS A 4 THR A 9 1 6 HELIX 2 2 SER A 15 GLY A 28 1 14 HELIX 3 3 ASP A 33 VAL A 50 1 18 HELIX 4 4 ASP A 82 VAL A 101 1 20 HELIX 5 5 ASP A 102 TYR A 106 5 5 HELIX 6 6 SER A 114 SER A 128 1 15 HELIX 7 7 SER A 142 THR A 150 1 9 HELIX 8 8 ASP A 153 LEU A 168 1 16 HELIX 9 9 GLY A 187 GLU A 191 5 5 HELIX 10 10 VAL A 211 GLU A 217 1 7 HELIX 11 11 SER A 219 SER A 226 5 8 HELIX 12 12 ASP A 231 ALA A 242 1 12 HELIX 13 13 SER A 253 LEU A 270 1 18 HELIX 14 14 TYR A 276 GLU A 290 1 15 HELIX 15 15 ASP A 297 TYR A 313 1 17 HELIX 16 16 ILE A 318 ASN A 331 1 14 HELIX 17 17 ASN A 333 GLN A 349 1 17 HELIX 18 18 ASP A 357 ASP A 370 1 14 HELIX 19 19 ASP A 370 ALA A 385 1 16 HELIX 20 20 SER A 402 GLN A 405 5 4 HELIX 21 21 ASP A 406 GLU A 425 1 20 HELIX 22 22 HIS A 433 ARG A 446 1 14 HELIX 23 23 GLU A 448 GLN A 453 1 6 HELIX 24 24 SER A 555 VAL A 566 1 12 HELIX 25 25 ASN A 571 ALA A 581 1 11 SHEET 1 A 4 GLN A 192 ALA A 194 0 SHEET 2 A 4 ALA A 182 PHE A 186 -1 N VAL A 184 O ALA A 194 SHEET 3 A 4 HIS A 174 LEU A 177 -1 N ALA A 176 O TRP A 183 SHEET 4 A 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 B 2 ARG A 456 ILE A 457 0 SHEET 2 B 2 VAL A 550 LEU A 551 1 O LEU A 551 N ARG A 456 CISPEP 1 PHE A 11 PRO A 12 0 -0.14 SITE 1 AC1 9 SER A 178 HIS A 181 TYR A 276 MET A 278 SITE 2 AC1 9 ASN A 282 TYR A 319 MET A 322 TYR A 323 SITE 3 AC1 9 HOH A 791 SITE 1 AC2 4 PHE A 365 HOH A 747 HOH A 970 HOH A 977 SITE 1 AC3 4 PHE A 47 GLY A 386 GLN A 400 HOH A 957 SITE 1 AC4 4 TYR A 133 PHE A 134 ARG A 137 ARG A 332 SITE 1 AC5 4 GLY A 190 GLU A 191 ARG A 229 SER A 583 SITE 1 AC6 5 ARG A 332 VAL A 334 ARG A 335 ALA A 403 SITE 2 AC6 5 HOH A 974 SITE 1 AC7 3 SER A 130 ARG A 131 ASN A 374 CRYST1 48.575 80.121 124.805 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008012 0.00000