HEADER VIRAL PROTEIN 22-AUG-12 4GQ9 TITLE CHIKUNGUNYA VIRUS NEUTRALIZING ANTIBODY 9.8B FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIKUNGUNYA VIRUS NEUTRALIZING ANTIBODY 9.8B FAB FRAGMENT COMPND 3 LIGHT CHAIN; COMPND 4 CHAIN: L; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHIKUNGUNYA VIRUS NEUTRALIZING ANTIBODY 9.8B FAB FRAGMENT COMPND 7 HEAVY CHAIN; COMPND 8 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090 KEYWDS IGG FOLD, ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SUN,M.G.ROSSMANN REVDAT 3 13-SEP-23 4GQ9 1 REMARK REVDAT 2 24-JAN-18 4GQ9 1 AUTHOR REVDAT 1 10-JUL-13 4GQ9 0 JRNL AUTH S.SUN,Y.XIANG,W.AKAHATA,H.HOLDAWAY,P.PAL,X.ZHANG, JRNL AUTH 2 M.S.DIAMOND,G.J.NABEL,M.G.ROSSMANN JRNL TITL STRUCTURAL ANALYSES AT PSEUDO ATOMIC RESOLUTION OF JRNL TITL 2 CHIKUNGUNYA VIRUS AND ANTIBODIES SHOW MECHANISMS OF JRNL TITL 3 NEUTRALIZATION. JRNL REF ELIFE V. 2 00435 2013 JRNL REFN ESSN 2050-084X JRNL PMID 23577234 JRNL DOI 10.7554/ELIFE.00435 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 11349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.325 REMARK 3 R VALUE (WORKING SET) : 0.323 REMARK 3 FREE R VALUE : 0.359 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 2.05000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.590 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.749 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 92.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.803 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.726 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3362 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4584 ; 0.910 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 3.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;33.398 ;24.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 541 ;14.516 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;10.535 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2508 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1182 ; 0.166 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2215 ; 0.288 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.028 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 0.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3487 ; 0.106 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 0.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 0.181 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 106 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1931 -5.3382 46.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.1487 REMARK 3 T33: 0.0714 T12: -0.0518 REMARK 3 T13: 0.0575 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 6.7245 L22: 7.6314 REMARK 3 L33: 5.5370 L12: -0.3208 REMARK 3 L13: 0.4994 L23: 0.4386 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.6203 S13: -0.3623 REMARK 3 S21: -0.4869 S22: 0.0814 S23: 0.0858 REMARK 3 S31: 0.4370 S32: 0.1445 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 107 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7657 -1.4664 10.1907 REMARK 3 T TENSOR REMARK 3 T11: 1.5952 T22: 1.3388 REMARK 3 T33: 0.2677 T12: 0.0468 REMARK 3 T13: -0.0798 T23: -0.3531 REMARK 3 L TENSOR REMARK 3 L11: 8.2473 L22: 8.0835 REMARK 3 L33: 6.3136 L12: 1.8107 REMARK 3 L13: -3.2993 L23: -2.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.7431 S13: -0.3054 REMARK 3 S21: -1.7219 S22: -0.2386 S23: -0.8359 REMARK 3 S31: 0.2569 S32: 0.7387 S33: 0.3169 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8368 15.3073 46.4389 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.1703 REMARK 3 T33: 0.1093 T12: -0.0590 REMARK 3 T13: -0.0623 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.3499 L22: 5.7998 REMARK 3 L33: 5.8852 L12: -0.0586 REMARK 3 L13: 0.2512 L23: 1.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: 0.5704 S13: 0.3375 REMARK 3 S21: -0.4211 S22: 0.0928 S23: -0.2030 REMARK 3 S31: -0.3135 S32: 0.3590 S33: 0.0792 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 119 H 218 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3466 12.7728 13.5418 REMARK 3 T TENSOR REMARK 3 T11: 1.4290 T22: 1.4264 REMARK 3 T33: 0.4337 T12: 0.0503 REMARK 3 T13: -0.3025 T23: 0.2253 REMARK 3 L TENSOR REMARK 3 L11: 14.2985 L22: 3.9487 REMARK 3 L33: 2.1688 L12: 0.2292 REMARK 3 L13: 1.4797 L23: 0.6612 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 1.0258 S13: 0.7980 REMARK 3 S21: -1.2551 S22: -0.2941 S23: 1.0899 REMARK 3 S31: 0.1233 S32: -0.2919 S33: 0.1666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96801 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.995 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS-CL PH 8.5 AND REMARK 280 0.2M LITHIUM SULFATE., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.92950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.86300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.92950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.86300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 46 -61.83 -104.52 REMARK 500 THR L 50 -52.04 76.16 REMARK 500 ARG L 60 -22.34 -165.35 REMARK 500 ALA L 82 94.73 -62.63 REMARK 500 ARG L 90 -147.14 -132.11 REMARK 500 THR L 91 19.75 48.62 REMARK 500 TYR L 93 99.93 15.83 REMARK 500 LEU L 95 58.62 75.29 REMARK 500 ASP L 109 122.89 -26.45 REMARK 500 ASN L 137 86.87 55.38 REMARK 500 ASP L 150 16.81 57.44 REMARK 500 PRO H 41 -72.31 -42.41 REMARK 500 GLN H 43 -11.54 -152.47 REMARK 500 SER H 54 -71.34 -139.68 REMARK 500 ASP H 55 79.17 56.91 REMARK 500 ASP H 66 55.16 -110.64 REMARK 500 SER H 76 7.86 99.71 REMARK 500 SER H 77 5.77 93.46 REMARK 500 LEU H 86 104.21 63.19 REMARK 500 SER H 91 101.91 -58.73 REMARK 500 THR H 101 173.22 54.61 REMARK 500 SER H 125 -57.59 -120.43 REMARK 500 VAL H 126 118.26 69.63 REMARK 500 SER H 161 6.78 59.49 REMARK 500 SER H 165 -24.07 -143.58 REMARK 500 PRO H 194 39.57 -94.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 76 SER H 77 68.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 4GQ9 L 1 212 PDB 4GQ9 4GQ9 1 212 DBREF 4GQ9 H 1 218 PDB 4GQ9 4GQ9 1 218 SEQRES 1 L 212 GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 212 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 212 SER SER VAL THR TYR MET TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 212 GLY SER SER PRO ARG LEU LEU ILE TYR ASP THR SER ASN SEQRES 5 L 212 LEU ALA SER GLY VAL PRO VAL ARG PHE SER GLY SER GLY SEQRES 6 L 212 SER GLY THR SER TYR SER LEU THR ILE SER ARG MET GLU SEQRES 7 L 212 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN ARG THR SEQRES 8 L 212 ASN TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 9 L 212 LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 212 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 212 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 212 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 212 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 212 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 212 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 212 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 212 ASN ARG ASN GLU SEQRES 1 H 218 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL ARG SEQRES 2 H 218 PRO GLY SER SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 218 TYR THR PHE THR SER LYS TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 218 ARG PRO ILE GLN GLY LEU GLU TRP ILE GLY ASN ILE ASP SEQRES 5 H 218 PRO SER ASP SER GLU THR HIS TYR ASN GLN LYS PHE LYS SEQRES 6 H 218 ASP LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 218 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 218 ALA VAL TYR TYR CYS ALA ARG GLY VAL THR ARG GLY TYR SEQRES 9 H 218 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 H 218 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 218 PRO VAL CYS GLY GLY THR THR GLY SER SER VAL THR LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR LEU SEQRES 15 H 218 SER SER SER VAL THR VAL THR SER ASN THR TRP PRO SER SEQRES 16 H 218 GLN THR ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 218 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG HELIX 1 1 GLU L 78 ALA L 82 5 5 HELIX 2 2 SER L 120 GLY L 127 1 8 HELIX 3 3 LYS L 182 HIS L 188 1 7 HELIX 4 4 GLN H 62 LYS H 65 5 4 HELIX 5 5 SER H 161 SER H 163 5 3 SHEET 1 A 3 LEU L 4 SER L 7 0 SHEET 2 A 3 VAL L 19 VAL L 29 -1 O SER L 24 N THR L 5 SHEET 3 A 3 PHE L 61 ILE L 74 -1 O ILE L 74 N VAL L 19 SHEET 1 B 6 ILE L 10 ALA L 13 0 SHEET 2 B 6 THR L 101 LEU L 105 1 O LYS L 102 N MET L 11 SHEET 3 B 6 THR L 84 GLN L 89 -1 N TYR L 85 O THR L 101 SHEET 4 B 6 MET L 32 GLN L 37 -1 N GLN L 37 O THR L 84 SHEET 5 B 6 ARG L 44 TYR L 48 -1 O ARG L 44 N GLN L 36 SHEET 6 B 6 ASN L 52 LEU L 53 -1 O ASN L 52 N TYR L 48 SHEET 1 C 4 THR L 113 PHE L 117 0 SHEET 2 C 4 GLY L 128 PHE L 138 -1 O ASN L 136 N THR L 113 SHEET 3 C 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 133 SHEET 4 C 4 VAL L 158 TRP L 162 -1 N SER L 161 O SER L 175 SHEET 1 D 4 SER L 152 ARG L 154 0 SHEET 2 D 4 ILE L 143 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 D 4 SER L 190 HIS L 197 -1 O THR L 196 N ASN L 144 SHEET 4 D 4 ILE L 204 ASN L 209 -1 O ILE L 204 N ALA L 195 SHEET 1 E 2 GLN H 3 GLN H 5 0 SHEET 2 E 2 LYS H 23 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 1 F 6 ALA H 9 VAL H 12 0 SHEET 2 F 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 F 6 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 112 SHEET 4 F 6 TRP H 33 ARG H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 F 6 GLY H 44 ASP H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 F 6 GLU H 57 TYR H 60 -1 O HIS H 59 N ASN H 50 SHEET 1 G 3 VAL H 18 LEU H 20 0 SHEET 2 G 3 THR H 78 LEU H 83 -1 O MET H 81 N LEU H 20 SHEET 3 G 3 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 H 4 TYR H 127 LEU H 129 0 SHEET 2 H 4 SER H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 H 4 LEU H 179 THR H 189 -1 O LEU H 182 N VAL H 147 SHEET 4 H 4 VAL H 168 GLN H 176 -1 N HIS H 169 O SER H 185 SHEET 1 I 3 THR H 156 TRP H 159 0 SHEET 2 I 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 I 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.03 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 4 CYS H 145 CYS H 200 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -5.14 CISPEP 2 TYR L 93 PRO L 94 0 -3.81 CISPEP 3 PRO L 94 LEU L 95 0 14.69 CISPEP 4 TYR L 139 PRO L 140 0 3.33 CISPEP 5 SER H 54 ASP H 55 0 2.16 CISPEP 6 LYS H 65 ASP H 66 0 -4.58 CISPEP 7 SER H 75 SER H 76 0 -27.92 CISPEP 8 ARG H 102 GLY H 103 0 1.08 CISPEP 9 PHE H 151 PRO H 152 0 -1.77 CISPEP 10 GLU H 153 PRO H 154 0 -5.22 CISPEP 11 TRP H 193 PRO H 194 0 0.53 CRYST1 87.859 57.726 118.108 90.00 97.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011382 0.000000 0.001500 0.00000 SCALE2 0.000000 0.017323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008540 0.00000