HEADER OXIDOREDUCTASE 22-AUG-12 4GQF TITLE AEROPYRUM PERNIX PEROXIREDOXIN Q ENZYME IN THE LOCALLY UNFOLDED TITLE 2 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEROXIREDOXIN Q; COMPND 5 EC: 1.11.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 272557; SOURCE 4 STRAIN: ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1; SOURCE 5 GENE: APE2125, APE_2125.1, BCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PEROXIREDOXIN, DIMER, PRXQ, BCP, LOCALLY-UNFOLDED, CXXXXC, REDUCES KEYWDS 2 PEROXIDES, DISULFIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PERKINS,P.A.KARPLUS,M.C.GRETES,K.J.NELSON,L.B.POOLE REVDAT 4 06-DEC-23 4GQF 1 REMARK REVDAT 3 13-SEP-23 4GQF 1 REMARK SEQADV LINK REVDAT 2 20-FEB-13 4GQF 1 JRNL REVDAT 1 24-OCT-12 4GQF 0 JRNL AUTH A.PERKINS,M.C.GRETES,K.J.NELSON,L.B.POOLE,P.A.KARPLUS JRNL TITL MAPPING THE ACTIVE SITE HELIX-TO-STRAND CONVERSION OF CXXXXC JRNL TITL 2 PEROXIREDOXIN Q ENZYMES. JRNL REF BIOCHEMISTRY V. 51 7638 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22928725 JRNL DOI 10.1021/BI301017S REMARK 0 REMARK 0 THIS ENTRY 4GQF REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA (R2CX3SF) DETERMINED BY AUTHORS OF THE PDB ENTRY REMARK 0 2CX3: E.MIZOHATA, K.MURAYAMA, M.IDAKA, A.TATSUGUCHI, T.TERADA, REMARK 0 M.SHIROUZU, S.YOKOYAMA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS REMARK 0 INITIATIVE (RSGI) REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2946 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2623 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2808 REMARK 3 BIN R VALUE (WORKING SET) : 0.2616 REMARK 3 BIN FREE R VALUE : 0.2771 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.68 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.54980 REMARK 3 B22 (A**2) : -3.54980 REMARK 3 B33 (A**2) : 7.09950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.486 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.178 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.204 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.177 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2695 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3664 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 918 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 375 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2695 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 333 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3072 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|164 } REMARK 3 ORIGIN FOR THE GROUP (A): -59.7928 15.2803 -18.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: -0.1559 REMARK 3 T33: -0.1066 T12: -0.2739 REMARK 3 T13: 0.0928 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 3.1471 L22: 4.4310 REMARK 3 L33: 0.9942 L12: 2.4545 REMARK 3 L13: -0.5306 L23: -0.0979 REMARK 3 S TENSOR REMARK 3 S11: 0.4360 S12: -0.3529 S13: 0.4564 REMARK 3 S21: 0.6984 S22: -0.2536 S23: 0.3753 REMARK 3 S31: -0.1938 S32: 0.0082 S33: -0.1825 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|3 - B|164 } REMARK 3 ORIGIN FOR THE GROUP (A): -41.0261 6.3284 -39.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: -0.0894 REMARK 3 T33: -0.0010 T12: -0.1849 REMARK 3 T13: 0.0755 T23: -0.1248 REMARK 3 L TENSOR REMARK 3 L11: 1.6716 L22: 3.8230 REMARK 3 L33: 1.4870 L12: 1.2185 REMARK 3 L13: 0.7318 L23: -0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.1383 S12: 0.2233 S13: -0.4416 REMARK 3 S21: -0.0376 S22: 0.1366 S23: -0.5356 REMARK 3 S31: 0.3579 S32: 0.3120 S33: 0.0017 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2CX3 REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2CX3. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.95667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.91333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.95667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.91333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.95667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.91333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.95667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.91333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -127.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -69.91333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 206 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1022 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 328 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CB CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -135.45 -130.03 REMARK 500 GLU A 52 -8.87 -153.98 REMARK 500 LYS A 59 30.45 -96.16 REMARK 500 ASP A 97 49.14 -100.40 REMARK 500 LEU B 7 109.67 -53.19 REMARK 500 THR B 50 -156.66 -115.21 REMARK 500 LYS B 59 38.81 -86.39 REMARK 500 ASP B 97 43.80 -97.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YWN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PEROXIREDOXIN-LIKE PROTEIN FROM SULFOLOBUS REMARK 900 TOKODAII. REMARK 900 RELATED ID: 2CX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BACTERIOFERRITIN COMIGRATORY PROTEIN REMARK 900 PEROXIREDOXIN FROM THE AEROPYRUM PERNIX K1 (FORM-2 CRYSTAL) REMARK 900 RELATED ID: 2CX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BACTERIOFERRITIN COMIGRATORY PROTEIN REMARK 900 PEROXIREDOXIN FROM THE AEROPYRUM PERNIX K1 (FORM-1 CRYSTAL). THIS REMARK 900 ENTRY 4GQF REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA R2CX3SF. REMARK 900 RELATED ID: 2G2E RELATED DB: PDB REMARK 900 RELATED ID: 2GQC RELATED DB: PDB DBREF 4GQF A 5 164 UNP Q9YA14 Q9YA14_AERPE 2 161 DBREF 4GQF B 5 164 UNP Q9YA14 Q9YA14_AERPE 2 161 SEQADV 4GQF MSE A 1 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF LYS A 2 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF GLY A 3 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF LEU A 4 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF MSE B 1 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF LYS B 2 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF GLY B 3 UNP Q9YA14 EXPRESSION TAG SEQADV 4GQF LEU B 4 UNP Q9YA14 EXPRESSION TAG SEQRES 1 A 164 MSE LYS GLY LEU VAL GLU LEU GLY GLU LYS ALA PRO ASP SEQRES 2 A 164 PHE THR LEU PRO ASN GLN ASP PHE GLU PRO VAL ASN LEU SEQRES 3 A 164 TYR GLU VAL LEU LYS ARG GLY ARG PRO ALA VAL LEU ILE SEQRES 4 A 164 PHE PHE PRO ALA ALA PHE SER PRO VAL CYS THR LYS GLU SEQRES 5 A 164 LEU CYS THR PHE ARG ASP LYS MSE ALA GLN LEU GLU LYS SEQRES 6 A 164 ALA ASN ALA GLU VAL LEU ALA ILE SER VAL ASP SER PRO SEQRES 7 A 164 TRP CYS LEU LYS LYS PHE LYS ASP GLU ASN ARG LEU ALA SEQRES 8 A 164 PHE ASN LEU LEU SER ASP TYR ASN ARG GLU VAL ILE LYS SEQRES 9 A 164 LEU TYR ASN VAL TYR HIS GLU ASP LEU LYS GLY LEU LYS SEQRES 10 A 164 MSE VAL ALA LYS ARG ALA VAL PHE ILE VAL LYS PRO ASP SEQRES 11 A 164 GLY THR VAL ALA TYR LYS TRP VAL THR ASP ASN PRO LEU SEQRES 12 A 164 ASN GLU PRO ASP TYR ASP GLU VAL VAL ARG GLU ALA ASN SEQRES 13 A 164 LYS ILE ALA GLY GLU LEU VAL ALA SEQRES 1 B 164 MSE LYS GLY LEU VAL GLU LEU GLY GLU LYS ALA PRO ASP SEQRES 2 B 164 PHE THR LEU PRO ASN GLN ASP PHE GLU PRO VAL ASN LEU SEQRES 3 B 164 TYR GLU VAL LEU LYS ARG GLY ARG PRO ALA VAL LEU ILE SEQRES 4 B 164 PHE PHE PRO ALA ALA PHE SER PRO VAL CYS THR LYS GLU SEQRES 5 B 164 LEU CYS THR PHE ARG ASP LYS MSE ALA GLN LEU GLU LYS SEQRES 6 B 164 ALA ASN ALA GLU VAL LEU ALA ILE SER VAL ASP SER PRO SEQRES 7 B 164 TRP CYS LEU LYS LYS PHE LYS ASP GLU ASN ARG LEU ALA SEQRES 8 B 164 PHE ASN LEU LEU SER ASP TYR ASN ARG GLU VAL ILE LYS SEQRES 9 B 164 LEU TYR ASN VAL TYR HIS GLU ASP LEU LYS GLY LEU LYS SEQRES 10 B 164 MSE VAL ALA LYS ARG ALA VAL PHE ILE VAL LYS PRO ASP SEQRES 11 B 164 GLY THR VAL ALA TYR LYS TRP VAL THR ASP ASN PRO LEU SEQRES 12 B 164 ASN GLU PRO ASP TYR ASP GLU VAL VAL ARG GLU ALA ASN SEQRES 13 B 164 LYS ILE ALA GLY GLU LEU VAL ALA MODRES 4GQF MSE A 60 MET SELENOMETHIONINE MODRES 4GQF MSE A 118 MET SELENOMETHIONINE MODRES 4GQF MSE B 60 MET SELENOMETHIONINE MODRES 4GQF MSE B 118 MET SELENOMETHIONINE HET MSE A 60 8 HET MSE A 118 8 HET MSE B 60 8 HET MSE B 118 8 HET GOL A 201 6 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET GOL B 201 6 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HET SO4 B 207 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 SO4 9(O4 S 2-) FORMUL 14 HOH *68(H2 O) HELIX 1 1 LEU A 26 LYS A 31 1 6 HELIX 2 2 LYS A 59 ALA A 66 5 8 HELIX 3 3 SER A 77 ASN A 88 1 12 HELIX 4 4 ARG A 100 ASN A 107 1 8 HELIX 5 5 ASP A 147 ALA A 164 1 18 HELIX 6 6 LEU B 26 LYS B 31 1 6 HELIX 7 7 LYS B 59 ALA B 66 5 8 HELIX 8 8 SER B 77 ASN B 88 1 12 HELIX 9 9 ARG B 100 TYR B 106 1 7 HELIX 10 10 ASP B 147 ALA B 164 1 18 SHEET 1 A 2 THR A 15 PRO A 17 0 SHEET 2 A 2 PRO A 23 ASN A 25 -1 O VAL A 24 N LEU A 16 SHEET 1 B 5 ASN A 93 SER A 96 0 SHEET 2 B 5 GLU A 69 SER A 74 1 N ALA A 72 O LEU A 95 SHEET 3 B 5 ALA A 36 PHE A 40 1 N ILE A 39 O ILE A 73 SHEET 4 B 5 ALA A 123 VAL A 127 -1 O VAL A 127 N ALA A 36 SHEET 5 B 5 VAL A 133 VAL A 138 -1 O ALA A 134 N ILE A 126 SHEET 1 C 2 VAL A 48 CYS A 49 0 SHEET 2 C 2 CYS A 54 THR A 55 -1 O THR A 55 N VAL A 48 SHEET 1 D 2 TYR A 109 LEU A 113 0 SHEET 2 D 2 LEU A 116 ALA A 120 -1 O LEU A 116 N LEU A 113 SHEET 1 E 2 THR B 15 PRO B 17 0 SHEET 2 E 2 PRO B 23 ASN B 25 -1 O VAL B 24 N LEU B 16 SHEET 1 F 5 ASN B 93 SER B 96 0 SHEET 2 F 5 GLU B 69 SER B 74 1 N ALA B 72 O LEU B 95 SHEET 3 F 5 ALA B 36 PHE B 40 1 N VAL B 37 O LEU B 71 SHEET 4 F 5 ARG B 122 VAL B 127 -1 O PHE B 125 N LEU B 38 SHEET 5 F 5 VAL B 133 THR B 139 -1 O TRP B 137 N VAL B 124 SHEET 1 G 2 VAL B 48 CYS B 49 0 SHEET 2 G 2 CYS B 54 THR B 55 -1 O THR B 55 N VAL B 48 SHEET 1 H 2 TYR B 109 LEU B 113 0 SHEET 2 H 2 LEU B 116 ALA B 120 -1 O VAL B 119 N HIS B 110 SSBOND 1 CYS A 49 CYS A 54 1555 1555 2.03 SSBOND 2 CYS B 49 CYS B 54 1555 1555 2.03 LINK C LYS A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N ALA A 61 1555 1555 1.32 LINK C LYS A 117 N MSE A 118 1555 1555 1.35 LINK C MSE A 118 N VAL A 119 1555 1555 1.33 LINK C LYS B 59 N MSE B 60 1555 1555 1.34 LINK C MSE B 60 N ALA B 61 1555 1555 1.36 LINK C LYS B 117 N MSE B 118 1555 1555 1.34 LINK C MSE B 118 N VAL B 119 1555 1555 1.34 SITE 1 AC1 8 ALA A 43 PHE A 45 SER A 46 ASP A 58 SITE 2 AC1 8 PHE A 84 ARG A 122 HOH A1020 HOH A1033 SITE 1 AC2 3 HIS A 110 GLU A 111 ASP A 112 SITE 1 AC3 3 GLN A 62 LYS A 65 ARG B 89 SITE 1 AC4 2 ARG A 57 LYS A 59 SITE 1 AC5 9 ALA B 43 PHE B 45 SER B 46 ASP B 58 SITE 2 AC5 9 MSE B 60 PHE B 84 ARG B 122 HOH B 319 SITE 3 AC5 9 HOH B 320 SITE 1 AC6 3 HIS B 110 GLU B 111 ASP B 112 SITE 1 AC7 4 ARG A 89 GLN B 62 LYS B 65 HOH B 310 SITE 1 AC8 3 ARG B 57 LYS B 59 HOH B 310 SITE 1 AC9 5 TYR B 135 TRP B 137 ASP B 147 GLU B 150 SITE 2 AC9 5 VAL B 151 SITE 1 BC1 2 TRP B 137 VAL B 138 SITE 1 BC2 3 GLU B 150 ARG B 153 GLU B 154 CRYST1 127.000 127.000 104.870 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007874 0.004546 0.000000 0.00000 SCALE2 0.000000 0.009092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009536 0.00000