HEADER PROTEIN BINDING 23-AUG-12 4GQK TITLE STRUCTURE OF NATIVE VGRG1-ACD WITH ADP (NO CATIONS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 717-1111; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG20A KEYWDS ALPHA BETA, ACTIN CROSS-LINKING TOXIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR V.S.NGUYEN,S.SPINELLI,E.DERREZ,E.DURAND,C.CAMBILLAU REVDAT 3 13-SEP-23 4GQK 1 REMARK SEQADV REVDAT 2 24-JAN-18 4GQK 1 AUTHOR JRNL REVDAT 1 25-SEP-13 4GQK 0 JRNL AUTH V.S.NGUYEN,S.SPINELLI,E.DERREZ,E.DURAND,C.CAMBILLAU JRNL TITL STRUCTURE OF NATIVE VGRG1-ACD WITH ADP (NO CATIONS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2772 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2036 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2641 REMARK 3 BIN R VALUE (WORKING SET) : 0.2008 REMARK 3 BIN FREE R VALUE : 0.2666 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06460 REMARK 3 B22 (A**2) : -2.06460 REMARK 3 B33 (A**2) : 4.12910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.275 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2932 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4003 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1013 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 434 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2932 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 393 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3645 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.26 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|0 - A|17 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.4925 89.4396 16.5335 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: 0.0158 REMARK 3 T33: -0.0073 T12: -0.0125 REMARK 3 T13: 0.0319 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1789 L22: 0.2144 REMARK 3 L33: 0.0270 L12: 0.2906 REMARK 3 L13: 0.1210 L23: -0.0872 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0024 S13: -0.0136 REMARK 3 S21: 0.0043 S22: 0.0034 S23: -0.0132 REMARK 3 S31: 0.0016 S32: 0.0004 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|18 - A|53 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.1006 90.2197 6.1002 REMARK 3 T TENSOR REMARK 3 T11: -0.0574 T22: 0.0677 REMARK 3 T33: -0.0325 T12: -0.0210 REMARK 3 T13: 0.0018 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.0508 L22: 0.0020 REMARK 3 L33: 0.0038 L12: -0.0901 REMARK 3 L13: -0.5312 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.0282 S13: -0.0271 REMARK 3 S21: 0.0200 S22: -0.0001 S23: 0.0113 REMARK 3 S31: 0.0040 S32: -0.0068 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|54 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 55.1120 88.2840 -7.2724 REMARK 3 T TENSOR REMARK 3 T11: -0.0611 T22: 0.0823 REMARK 3 T33: -0.0239 T12: 0.0253 REMARK 3 T13: -0.0113 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.3389 L22: 0.0000 REMARK 3 L33: 0.8333 L12: 0.3108 REMARK 3 L13: 0.6033 L23: 0.3722 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0153 S13: -0.0186 REMARK 3 S21: -0.0088 S22: 0.0017 S23: 0.0049 REMARK 3 S31: 0.0073 S32: 0.0035 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|116 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.4772 98.8282 11.2597 REMARK 3 T TENSOR REMARK 3 T11: -0.0510 T22: 0.0507 REMARK 3 T33: -0.0359 T12: -0.0442 REMARK 3 T13: 0.0026 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.0127 L22: 0.2063 REMARK 3 L33: 0.8756 L12: -0.0738 REMARK 3 L13: 1.0785 L23: 0.0331 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0047 S13: 0.0118 REMARK 3 S21: 0.0284 S22: -0.0151 S23: 0.0150 REMARK 3 S31: -0.0016 S32: 0.0146 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|117 - A|143 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.2001 93.4819 9.3748 REMARK 3 T TENSOR REMARK 3 T11: -0.0297 T22: 0.0687 REMARK 3 T33: -0.0460 T12: -0.0209 REMARK 3 T13: 0.0036 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0223 L22: 0.0000 REMARK 3 L33: 0.0490 L12: 0.0337 REMARK 3 L13: -0.2046 L23: 0.3205 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0159 S13: -0.0031 REMARK 3 S21: -0.0042 S22: -0.0057 S23: -0.0212 REMARK 3 S31: 0.0033 S32: 0.0144 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|144 - A|170 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.7662 99.3512 2.7687 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: 0.0098 REMARK 3 T33: -0.0239 T12: -0.0247 REMARK 3 T13: 0.0218 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.0958 L22: 0.1081 REMARK 3 L33: 0.5874 L12: -0.0911 REMARK 3 L13: 0.4646 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.0231 S13: 0.0106 REMARK 3 S21: -0.0150 S22: -0.0204 S23: 0.0205 REMARK 3 S31: -0.0157 S32: 0.0243 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|171 - A|206 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.3419 91.5652 13.1418 REMARK 3 T TENSOR REMARK 3 T11: -0.1050 T22: 0.0853 REMARK 3 T33: 0.0050 T12: 0.0482 REMARK 3 T13: -0.0048 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.9108 L22: 0.0000 REMARK 3 L33: 0.4783 L12: -0.8196 REMARK 3 L13: 0.1283 L23: 0.2699 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.0201 S13: 0.0114 REMARK 3 S21: -0.0050 S22: 0.0057 S23: 0.0054 REMARK 3 S31: -0.0229 S32: -0.0327 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|207 - A|236 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.4343 85.9658 3.9637 REMARK 3 T TENSOR REMARK 3 T11: -0.0729 T22: 0.0569 REMARK 3 T33: 0.0010 T12: 0.0083 REMARK 3 T13: -0.0285 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0721 L22: 0.0262 REMARK 3 L33: 0.0936 L12: 0.1419 REMARK 3 L13: 0.6144 L23: -0.6236 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0400 S13: 0.0111 REMARK 3 S21: -0.0352 S22: -0.0108 S23: -0.0103 REMARK 3 S31: 0.0006 S32: -0.0141 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|237 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.7103 85.8893 -7.2540 REMARK 3 T TENSOR REMARK 3 T11: -0.0111 T22: 0.0317 REMARK 3 T33: -0.0374 T12: -0.0344 REMARK 3 T13: -0.0130 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.5810 L22: 0.0000 REMARK 3 L33: 1.1239 L12: 0.4680 REMARK 3 L13: -0.9729 L23: -0.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0124 S13: 0.0087 REMARK 3 S21: -0.0044 S22: 0.0188 S23: -0.0133 REMARK 3 S31: 0.0030 S32: -0.0057 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|270 - A|319 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.9171 78.4147 4.4089 REMARK 3 T TENSOR REMARK 3 T11: -0.1043 T22: 0.0748 REMARK 3 T33: 0.0270 T12: -0.0372 REMARK 3 T13: -0.0354 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.1439 L22: 0.0000 REMARK 3 L33: 0.5660 L12: -0.1165 REMARK 3 L13: -0.1611 L23: -0.6435 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.0094 S13: -0.0442 REMARK 3 S21: -0.0117 S22: -0.0053 S23: 0.0071 REMARK 3 S31: 0.0365 S32: -0.0299 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|320 - A|343 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.2788 86.7137 15.6763 REMARK 3 T TENSOR REMARK 3 T11: -0.0219 T22: 0.0316 REMARK 3 T33: -0.0213 T12: 0.0033 REMARK 3 T13: -0.0106 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.3346 L22: 0.3017 REMARK 3 L33: 0.3517 L12: 0.5954 REMARK 3 L13: 0.9273 L23: 0.6769 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0022 S13: -0.0059 REMARK 3 S21: 0.0015 S22: -0.0054 S23: 0.0007 REMARK 3 S31: -0.0111 S32: -0.0055 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|344 - A|355 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.7739 105.3520 10.6313 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.0033 REMARK 3 T33: 0.0096 T12: -0.0075 REMARK 3 T13: 0.0161 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.1722 REMARK 3 L33: 0.0820 L12: -0.0071 REMARK 3 L13: 0.0552 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0009 S13: 0.0042 REMARK 3 S21: -0.0040 S22: -0.0022 S23: -0.0020 REMARK 3 S31: -0.0114 S32: 0.0044 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { A|401 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.2747 88.9932 10.1456 REMARK 3 T TENSOR REMARK 3 T11: -0.0086 T22: 0.0003 REMARK 3 T33: -0.0062 T12: -0.0122 REMARK 3 T13: -0.0087 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0000 REMARK 3 L33: 0.0039 L12: 0.0374 REMARK 3 L13: 0.0073 L23: 0.0167 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0009 S13: 0.0001 REMARK 3 S21: -0.0022 S22: -0.0007 S23: -0.0014 REMARK 3 S31: 0.0003 S32: 0.0003 S33: 0.0003 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DTD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXING 300 NL OF PROTEIN AT 13MG/ML REMARK 280 WITH 100 NL OF 2.4 M AMSO4, 0.1 M BI-TRIS, PH 6.3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.29500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.44250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.14750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.29500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.14750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.44250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 128.71000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 128.71000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.14750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 LYS A -1 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MET A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 355 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 17 CE MET A 156 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -155.68 -138.64 REMARK 500 ASP A 51 -90.41 -120.66 REMARK 500 PRO A 120 99.81 -69.58 REMARK 500 ASN A 238 -118.19 51.92 REMARK 500 ASN A 238 -118.19 57.03 REMARK 500 GLU A 264 -58.54 71.08 REMARK 500 ALA A 317 70.64 -155.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DTD RELATED DB: PDB REMARK 900 RELATED ID: 4DTF RELATED DB: PDB REMARK 900 RELATED ID: 4DTH RELATED DB: PDB REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4E1C RELATED DB: PDB REMARK 900 RELATED ID: 4E1D RELATED DB: PDB DBREF 4GQK A -10 384 UNP Q9KS45 Q9KS45_VIBCH 717 1111 SEQADV 4GQK GLY A -11 UNP Q9KS45 EXPRESSION TAG SEQRES 1 A 396 GLY ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLU ASN GLU LEU ALA GLY LEU VAL VAL ALA MET PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MET LEU THR LYS ASP MET ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MET ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MET LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MET THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MET SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MET SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MET LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL HET ADP A 401 27 HET SO4 A 402 5 HET SO4 A 403 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *412(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 LYS A 170 PHE A 172 5 3 HELIX 4 4 THR A 177 SER A 185 1 9 HELIX 5 5 SER A 192 THR A 201 1 10 HELIX 6 6 ASP A 208 GLY A 234 1 27 HELIX 7 7 ASP A 241 GLN A 246 5 6 HELIX 8 8 ASP A 256 GLU A 264 1 9 HELIX 9 9 LYS A 270 LEU A 278 5 9 HELIX 10 10 SER A 279 HIS A 289 1 11 HELIX 11 11 HIS A 289 SER A 296 1 8 HELIX 12 12 SER A 299 ASP A 312 1 14 HELIX 13 13 PRO A 344 LEU A 351 5 8 SITE 1 AC1 12 SER A 12 GLY A 14 ILE A 15 GLU A 16 SITE 2 AC1 12 VAL A 80 SER A 81 PRO A 83 THR A 164 SITE 3 AC1 12 LEU A 337 HOH A 579 HOH A 835 HOH A 847 SITE 1 AC2 4 LYS A 260 ARG A 341 HOH A 618 HOH A 900 SITE 1 AC3 5 THR A 104 THR A 108 HOH A 509 HOH A 690 SITE 2 AC3 5 HOH A 887 CRYST1 128.710 128.710 76.590 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013057 0.00000