HEADER UNKNOWN FUNCTION 23-AUG-12 4GQM TITLE CRYSTAL STRUCTURE OF A HELIX-TURN-HELIX CONTAINING HYPOTHETICAL TITLE 2 PROTEIN (CT009) FROM CHLAMYDIA TRACHOMATIS IN A SUB-DOMAIN SWAP TITLE 3 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CT009; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-116; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 471472; SOURCE 4 STRAIN: L2/434/BU; SOURCE 5 GENE: CTL0264; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HELIX-TURN-HELIX, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.KEMEGE,J.HICKEY,S.LOVELL,K.P.BATTAILE,P.S.HEFTY REVDAT 4 03-APR-24 4GQM 1 REMARK REVDAT 3 28-FEB-24 4GQM 1 SEQADV REVDAT 2 15-NOV-17 4GQM 1 REMARK REVDAT 1 28-AUG-13 4GQM 0 JRNL AUTH K.KEMEGE,J.HICKEY,S.LOVELL,K.P.BATTAILE,P.S.HEFTY JRNL TITL CRYSTAL STRUCTURE OF A HELIX-TURN-HELIX CONTAINING JRNL TITL 2 HYPOTHETICAL PROTEIN (CT009) FROM CHLAMYDIA TRACHOMATIS IN A JRNL TITL 3 SUB-DOMAIN SWAP CONFORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1096 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2159 - 3.0122 1.00 2839 135 0.1779 0.1829 REMARK 3 2 3.0122 - 2.3912 1.00 2693 117 0.1722 0.1654 REMARK 3 3 2.3912 - 2.0891 1.00 2633 152 0.1383 0.1725 REMARK 3 4 2.0891 - 1.8981 1.00 2590 137 0.1448 0.1556 REMARK 3 5 1.8981 - 1.7621 1.00 2596 148 0.1368 0.1709 REMARK 3 6 1.7621 - 1.6582 1.00 2602 130 0.1302 0.1660 REMARK 3 7 1.6582 - 1.5752 1.00 2561 153 0.1195 0.1425 REMARK 3 8 1.5752 - 1.5066 1.00 2577 132 0.1188 0.1500 REMARK 3 9 1.5066 - 1.4486 1.00 2585 124 0.1382 0.1733 REMARK 3 10 1.4486 - 1.3986 1.00 2538 143 0.1428 0.1683 REMARK 3 11 1.3986 - 1.3549 1.00 2570 133 0.1489 0.1846 REMARK 3 12 1.3549 - 1.3162 1.00 2566 122 0.1663 0.1918 REMARK 3 13 1.3162 - 1.2815 1.00 2531 153 0.1942 0.2154 REMARK 3 14 1.2815 - 1.2500 0.99 2536 142 0.2369 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1036 REMARK 3 ANGLE : 1.437 1408 REMARK 3 CHIRALITY : 0.083 155 REMARK 3 PLANARITY : 0.007 185 REMARK 3 DIHEDRAL : 13.102 410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.762 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: COMPUTATIONAL MODEL GENERATED FROM THE PROGRAM REMARK 200 MODELLER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V PEG4000, 0.1 M TRIS, PH 8.5, REMARK 280 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.06000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.58550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.03000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.58550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.09000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.58550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.58550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.03000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.58550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.58550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.09000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.06000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ARG A 107 REMARK 465 ASN A 108 REMARK 465 SER A 109 REMARK 465 PRO A 110 REMARK 465 GLU A 111 REMARK 465 LYS A 112 REMARK 465 ALA A 113 REMARK 465 ILE A 114 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CE NZ REMARK 470 LYS A 85 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 14 O HOH A 258 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 4GQM A 1 116 UNP B0B9B6 B0B9B6_CHLT2 1 116 SEQADV 4GQM GLY A -1 UNP B0B9B6 EXPRESSION TAG SEQADV 4GQM HIS A 0 UNP B0B9B6 EXPRESSION TAG SEQRES 1 A 118 GLY HIS MET SER GLU HIS VAL HIS LYS GLU LEU LEU HIS SEQRES 2 A 118 LEU GLY GLU VAL PHE ARG SER GLN ARG GLU GLU ARG ALA SEQRES 3 A 118 LEU SER LEU LYS ASP VAL GLU ALA ALA THR SER ILE ARG SEQRES 4 A 118 LEU SER ALA LEU GLU ALA ILE GLU ALA GLY HIS LEU GLY SEQRES 5 A 118 LYS LEU ILE SER PRO VAL TYR ALA GLN GLY PHE MET LYS SEQRES 6 A 118 LYS TYR ALA ALA PHE LEU ASP MET ASP GLY ASP ARG LEU SEQRES 7 A 118 LEU LYS GLU HIS PRO TYR VAL LEU LYS ILE PHE GLN GLU SEQRES 8 A 118 PHE SER ASP GLN ASN MET ASP MET LEU LEU ASP LEU GLU SEQRES 9 A 118 SER MET GLY GLY ARG ASN SER PRO GLU LYS ALA ILE ARG SEQRES 10 A 118 SER FORMUL 2 HOH *111(H2 O) HELIX 1 1 GLY A -1 ARG A 23 1 25 HELIX 2 2 SER A 26 SER A 35 1 10 HELIX 3 3 ARG A 37 GLY A 47 1 11 HELIX 4 4 HIS A 48 SER A 54 1 7 HELIX 5 5 VAL A 56 LEU A 69 1 14 HELIX 6 6 ASP A 72 GLU A 79 1 8 HELIX 7 7 HIS A 80 SER A 103 1 24 CRYST1 55.171 55.171 88.120 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011348 0.00000