data_4GRF # _entry.id 4GRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GRF pdb_00004grf 10.2210/pdb4grf/pdb RCSB RCSB074543 ? ? WWPDB D_1000074543 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2LRN 'NMR structure' unspecified TargetTrack EFI-501010 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GRF _pdbx_database_status.recvd_initial_deposition_date 2012-08-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Patskovsky, Y.' 1 'Sampathkumar, P.' 2 'Toro, R.' 3 'Bhosle, R.' 4 'Zencheck, W.D.' 5 'Hillerich, B.' 6 'Seidel, R.D.' 7 'Washington, E.' 8 'Scott Glenn, A.' 9 'Chowdhury, S.' 10 'Evans, B.' 11 'Imker, H.J.' 12 'Hammonds, J.' 13 'Al-Obaidi, N.F.' 14 'Stead, M.' 15 'Love, J.' 16 'Armstrong, R.N.' 17 'Gerlt, J.A.' 18 'Almo, S.C.' 19 'Enzyme Function Initiative (EFI)' 20 # _citation.id primary _citation.title 'Structure of thioredoxin domain of thiol-disulfide oxidoreductase BVU-2223 from Bacteroides vulgatus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patskovsky, Y.' 1 ? primary 'Sampathkumar, P.' 2 ? primary 'Toro, R.' 3 ? primary 'Bhosle, R.' 4 ? primary 'Zencheck, W.D.' 5 ? primary 'Hillerich, B.' 6 ? primary 'Seidel, R.D.' 7 ? primary 'Washington, E.' 8 ? primary 'Scott Glenn, A.' 9 ? primary 'Evans, B.' 10 ? primary 'Chowdhury, S.' 11 ? primary 'Hammonds, J.' 12 ? primary 'Al-Obaidi, N.F.' 13 ? primary 'Stead, M.' 14 ? primary 'Love, J.' 15 ? primary 'Imker, H.J.' 16 ? primary 'Armstrong, R.N.' 17 ? primary 'Gerlt, J.A.' 18 ? primary 'Almo, S.C.' 19 ? # _cell.entry_id 4GRF _cell.length_a 34.664 _cell.length_b 52.650 _cell.length_c 82.622 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GRF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative thiol-disulfide oxidoreductase' 17364.656 1 ? ? 'thioredoxin domain RESIDUES 252-392' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 5 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn GLUTATHIONE 307.323 1 ? ? ? ? 5 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKA IEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKA IEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier EFI-501010 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 ALA n 1 5 THR n 1 6 GLY n 1 7 SER n 1 8 VAL n 1 9 ALA n 1 10 PRO n 1 11 ALA n 1 12 ILE n 1 13 THR n 1 14 GLY n 1 15 ILE n 1 16 ASP n 1 17 LEU n 1 18 LYS n 1 19 GLY n 1 20 ASN n 1 21 SER n 1 22 VAL n 1 23 SER n 1 24 LEU n 1 25 ASN n 1 26 ASP n 1 27 PHE n 1 28 LYS n 1 29 GLY n 1 30 LYS n 1 31 TYR n 1 32 VAL n 1 33 LEU n 1 34 VAL n 1 35 ASP n 1 36 PHE n 1 37 TRP n 1 38 PHE n 1 39 ALA n 1 40 GLY n 1 41 CYS n 1 42 SER n 1 43 TRP n 1 44 CYS n 1 45 ARG n 1 46 LYS n 1 47 GLU n 1 48 THR n 1 49 PRO n 1 50 TYR n 1 51 LEU n 1 52 LEU n 1 53 LYS n 1 54 THR n 1 55 TYR n 1 56 ASN n 1 57 ALA n 1 58 PHE n 1 59 LYS n 1 60 ASP n 1 61 LYS n 1 62 GLY n 1 63 PHE n 1 64 THR n 1 65 ILE n 1 66 TYR n 1 67 GLY n 1 68 VAL n 1 69 SER n 1 70 THR n 1 71 ASP n 1 72 ARG n 1 73 ARG n 1 74 GLU n 1 75 GLU n 1 76 ASP n 1 77 TRP n 1 78 LYS n 1 79 LYS n 1 80 ALA n 1 81 ILE n 1 82 GLU n 1 83 GLU n 1 84 ASP n 1 85 LYS n 1 86 SER n 1 87 TYR n 1 88 TRP n 1 89 ASN n 1 90 GLN n 1 91 VAL n 1 92 LEU n 1 93 LEU n 1 94 GLN n 1 95 LYS n 1 96 ASP n 1 97 ASP n 1 98 VAL n 1 99 LYS n 1 100 ASP n 1 101 VAL n 1 102 LEU n 1 103 GLU n 1 104 SER n 1 105 TYR n 1 106 CYS n 1 107 ILE n 1 108 VAL n 1 109 GLY n 1 110 PHE n 1 111 PRO n 1 112 HIS n 1 113 ILE n 1 114 ILE n 1 115 LEU n 1 116 VAL n 1 117 ASP n 1 118 PRO n 1 119 GLU n 1 120 GLY n 1 121 LYS n 1 122 ILE n 1 123 VAL n 1 124 ALA n 1 125 LYS n 1 126 GLU n 1 127 LEU n 1 128 ARG n 1 129 GLY n 1 130 ASP n 1 131 ASP n 1 132 LEU n 1 133 TYR n 1 134 ASN n 1 135 THR n 1 136 VAL n 1 137 GLU n 1 138 LYS n 1 139 PHE n 1 140 VAL n 1 141 ASN n 1 142 GLY n 1 143 ALA n 1 144 LYS n 1 145 GLU n 1 146 GLY n 1 147 HIS n 1 148 HIS n 1 149 HIS n 1 150 HIS n 1 151 HIS n 1 152 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BVU_2223 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8482 / DSM 1447 / NCTC 11154' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides vulgatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6L2G9_BACV8 _struct_ref.pdbx_db_accession A6L2G9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEE DKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAK ; _struct_ref.pdbx_align_begin 252 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GRF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6L2G9 _struct_ref_seq.db_align_beg 252 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 392 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 252 _struct_ref_seq.pdbx_auth_seq_align_end 392 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GRF MET A 1 ? UNP A6L2G9 ? ? 'expression tag' 249 1 1 4GRF SER A 2 ? UNP A6L2G9 ? ? 'expression tag' 250 2 1 4GRF LEU A 3 ? UNP A6L2G9 ? ? 'expression tag' 251 3 1 4GRF GLU A 145 ? UNP A6L2G9 ? ? 'expression tag' 393 4 1 4GRF GLY A 146 ? UNP A6L2G9 ? ? 'expression tag' 394 5 1 4GRF HIS A 147 ? UNP A6L2G9 ? ? 'expression tag' 395 6 1 4GRF HIS A 148 ? UNP A6L2G9 ? ? 'expression tag' 396 7 1 4GRF HIS A 149 ? UNP A6L2G9 ? ? 'expression tag' 397 8 1 4GRF HIS A 150 ? UNP A6L2G9 ? ? 'expression tag' 398 9 1 4GRF HIS A 151 ? UNP A6L2G9 ? ? 'expression tag' 399 10 1 4GRF HIS A 152 ? UNP A6L2G9 ? ? 'expression tag' 400 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GSH non-polymer . GLUTATHIONE ? 'C10 H17 N3 O6 S' 307.323 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GRF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '2M AMMONIUM SULFATE, 0.2M SODIUM CHLORIDE, 0.1M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-08-10 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 1.075 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4GRF _reflns.observed_criterion_sigma_I -5.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70.000 _reflns.d_resolution_high 1.760 _reflns.number_obs 15565 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06800 _reflns.pdbx_netI_over_sigmaI 13.8000 _reflns.B_iso_Wilson_estimate 20.918 _reflns.pdbx_redundancy 5.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.440 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.700 _reflns_shell.pdbx_redundancy 5.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GRF _refine.ls_number_reflns_obs 14708 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.40 _refine.ls_d_res_high 1.76 _refine.ls_percent_reflns_obs 99.47 _refine.ls_R_factor_obs 0.16770 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16547 _refine.ls_R_factor_R_free 0.21028 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 773 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 28.535 _refine.aniso_B[1][1] -0.02 _refine.aniso_B[2][2] -0.11 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2LRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.109 _refine.pdbx_overall_ESU_R_Free 0.112 _refine.overall_SU_ML 0.070 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.185 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1124 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1249 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 44.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.020 ? 1218 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.000 0.020 ? 1147 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.200 1.976 ? 1660 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.598 3.002 ? 2665 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.208 5.000 ? 154 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 30.175 25.091 ? 55 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.581 15.000 ? 216 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.484 15.000 ? 4 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.069 0.200 ? 182 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 1370 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.000 0.020 ? 270 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.761 _refine_ls_shell.d_res_low 1.807 _refine_ls_shell.number_reflns_R_work 1024 _refine_ls_shell.R_factor_R_work 0.206 _refine_ls_shell.percent_reflns_obs 96.86 _refine_ls_shell.R_factor_R_free 0.301 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4GRF _struct.title 'Crystal structure of thioredoxin domain of thiol-disulfide oxidoreductase BVU-2223 (Target EFI-501010) from Bacteroides vulgatus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GRF _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 2 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 25 ? LYS A 28 ? ASN A 273 LYS A 276 5 ? 4 HELX_P HELX_P2 2 CYS A 41 ? GLU A 47 ? CYS A 289 GLU A 295 1 ? 7 HELX_P HELX_P3 3 GLU A 47 ? LYS A 59 ? GLU A 295 LYS A 307 1 ? 13 HELX_P HELX_P4 4 ARG A 73 ? LYS A 85 ? ARG A 321 LYS A 333 1 ? 13 HELX_P HELX_P5 5 GLN A 94 ? ASP A 96 ? GLN A 342 ASP A 344 5 ? 3 HELX_P HELX_P6 6 ASP A 97 ? TYR A 105 ? ASP A 345 TYR A 353 1 ? 9 HELX_P HELX_P7 7 ARG A 128 ? ASN A 141 ? ARG A 376 ASN A 389 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 41 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 289 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 292 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.075 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 110 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 358 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 111 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 359 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.72 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 13 ? ILE A 15 ? THR A 261 ILE A 263 A 2 SER A 21 ? SER A 23 ? SER A 269 SER A 271 B 1 ASN A 89 ? LEU A 92 ? ASN A 337 LEU A 340 B 2 PHE A 63 ? SER A 69 ? PHE A 311 SER A 317 B 3 TYR A 31 ? TRP A 37 ? TYR A 279 TRP A 285 B 4 HIS A 112 ? VAL A 116 ? HIS A 360 VAL A 364 B 5 ILE A 122 ? ALA A 124 ? ILE A 370 ALA A 372 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 14 ? N GLY A 262 O VAL A 22 ? O VAL A 270 B 1 2 O ASN A 89 ? O ASN A 337 N GLY A 67 ? N GLY A 315 B 2 3 O VAL A 68 ? O VAL A 316 N ASP A 35 ? N ASP A 283 B 3 4 N VAL A 32 ? N VAL A 280 O VAL A 116 ? O VAL A 364 B 4 5 N LEU A 115 ? N LEU A 363 O VAL A 123 ? O VAL A 371 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 501 ? 4 'BINDING SITE FOR RESIDUE CL A 501' AC2 Software A CL 502 ? 5 'BINDING SITE FOR RESIDUE CL A 502' AC3 Software A CL 503 ? 3 'BINDING SITE FOR RESIDUE CL A 503' AC4 Software A SO4 504 ? 7 'BINDING SITE FOR RESIDUE SO4 A 504' AC5 Software A CL 505 ? 6 'BINDING SITE FOR RESIDUE CL A 505' AC6 Software A CL 506 ? 3 'BINDING SITE FOR RESIDUE CL A 506' AC7 Software A GSH 507 ? 13 'BINDING SITE FOR RESIDUE GSH A 507' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 16 ? ASP A 264 . ? 1_555 ? 2 AC1 4 LEU A 17 ? LEU A 265 . ? 1_555 ? 3 AC1 4 GLN A 90 ? GLN A 338 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 666 . ? 1_555 ? 5 AC2 5 HIS A 112 ? HIS A 360 . ? 1_555 ? 6 AC2 5 ILE A 113 ? ILE A 361 . ? 1_555 ? 7 AC2 5 GLU A 126 ? GLU A 374 . ? 1_555 ? 8 AC2 5 ARG A 128 ? ARG A 376 . ? 1_555 ? 9 AC2 5 HOH I . ? HOH A 642 . ? 1_555 ? 10 AC3 3 SER A 2 ? SER A 250 . ? 1_555 ? 11 AC3 3 VAL A 108 ? VAL A 356 . ? 1_555 ? 12 AC3 3 GLY A 109 ? GLY A 357 . ? 1_555 ? 13 AC4 7 LYS A 30 ? LYS A 278 . ? 1_555 ? 14 AC4 7 TYR A 55 ? TYR A 303 . ? 1_555 ? 15 AC4 7 THR A 64 ? THR A 312 . ? 1_555 ? 16 AC4 7 ASN A 89 ? ASN A 337 . ? 1_555 ? 17 AC4 7 HOH I . ? HOH A 616 . ? 1_555 ? 18 AC4 7 HOH I . ? HOH A 625 . ? 1_555 ? 19 AC4 7 HOH I . ? HOH A 646 . ? 1_555 ? 20 AC5 6 ALA A 11 ? ALA A 259 . ? 1_555 ? 21 AC5 6 ILE A 12 ? ILE A 260 . ? 1_555 ? 22 AC5 6 LEU A 24 ? LEU A 272 . ? 1_555 ? 23 AC5 6 ASN A 25 ? ASN A 273 . ? 1_555 ? 24 AC5 6 HOH I . ? HOH A 638 . ? 1_555 ? 25 AC5 6 HOH I . ? HOH A 641 . ? 1_555 ? 26 AC6 3 SER A 7 ? SER A 255 . ? 1_555 ? 27 AC6 3 VAL A 8 ? VAL A 256 . ? 1_555 ? 28 AC6 3 SER A 42 ? SER A 290 . ? 1_655 ? 29 AC7 13 SER A 2 ? SER A 250 . ? 1_555 ? 30 AC7 13 LEU A 3 ? LEU A 251 . ? 1_555 ? 31 AC7 13 ALA A 4 ? ALA A 252 . ? 1_555 ? 32 AC7 13 SER A 21 ? SER A 269 . ? 3_755 ? 33 AC7 13 ASP A 26 ? ASP A 274 . ? 3_755 ? 34 AC7 13 GLU A 75 ? GLU A 323 . ? 3_655 ? 35 AC7 13 LYS A 79 ? LYS A 327 . ? 3_655 ? 36 AC7 13 GLU A 82 ? GLU A 330 . ? 3_655 ? 37 AC7 13 CYS A 106 ? CYS A 354 . ? 1_555 ? 38 AC7 13 LYS A 125 ? LYS A 373 . ? 1_555 ? 39 AC7 13 HOH I . ? HOH A 657 . ? 1_555 ? 40 AC7 13 HOH I . ? HOH A 694 . ? 1_555 ? 41 AC7 13 HOH I . ? HOH A 695 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GRF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GRF _atom_sites.fract_transf_matrix[1][1] 0.028848 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018993 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012103 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 249 ? ? ? A . n A 1 2 SER 2 250 250 SER SER A . n A 1 3 LEU 3 251 251 LEU LEU A . n A 1 4 ALA 4 252 252 ALA ALA A . n A 1 5 THR 5 253 253 THR THR A . n A 1 6 GLY 6 254 254 GLY GLY A . n A 1 7 SER 7 255 255 SER SER A . n A 1 8 VAL 8 256 256 VAL VAL A . n A 1 9 ALA 9 257 257 ALA ALA A . n A 1 10 PRO 10 258 258 PRO PRO A . n A 1 11 ALA 11 259 259 ALA ALA A . n A 1 12 ILE 12 260 260 ILE ILE A . n A 1 13 THR 13 261 261 THR THR A . n A 1 14 GLY 14 262 262 GLY GLY A . n A 1 15 ILE 15 263 263 ILE ILE A . n A 1 16 ASP 16 264 264 ASP ASP A . n A 1 17 LEU 17 265 265 LEU LEU A . n A 1 18 LYS 18 266 266 LYS LYS A . n A 1 19 GLY 19 267 267 GLY GLY A . n A 1 20 ASN 20 268 268 ASN ASN A . n A 1 21 SER 21 269 269 SER SER A . n A 1 22 VAL 22 270 270 VAL VAL A . n A 1 23 SER 23 271 271 SER SER A . n A 1 24 LEU 24 272 272 LEU LEU A . n A 1 25 ASN 25 273 273 ASN ASN A . n A 1 26 ASP 26 274 274 ASP ASP A . n A 1 27 PHE 27 275 275 PHE PHE A . n A 1 28 LYS 28 276 276 LYS LYS A . n A 1 29 GLY 29 277 277 GLY GLY A . n A 1 30 LYS 30 278 278 LYS LYS A . n A 1 31 TYR 31 279 279 TYR TYR A . n A 1 32 VAL 32 280 280 VAL VAL A . n A 1 33 LEU 33 281 281 LEU LEU A . n A 1 34 VAL 34 282 282 VAL VAL A . n A 1 35 ASP 35 283 283 ASP ASP A . n A 1 36 PHE 36 284 284 PHE PHE A . n A 1 37 TRP 37 285 285 TRP TRP A . n A 1 38 PHE 38 286 286 PHE PHE A . n A 1 39 ALA 39 287 287 ALA ALA A . n A 1 40 GLY 40 288 288 GLY GLY A . n A 1 41 CYS 41 289 289 CYS CYS A . n A 1 42 SER 42 290 290 SER SER A . n A 1 43 TRP 43 291 291 TRP TRP A . n A 1 44 CYS 44 292 292 CYS CYS A . n A 1 45 ARG 45 293 293 ARG ARG A . n A 1 46 LYS 46 294 294 LYS LYS A . n A 1 47 GLU 47 295 295 GLU GLU A . n A 1 48 THR 48 296 296 THR THR A . n A 1 49 PRO 49 297 297 PRO PRO A . n A 1 50 TYR 50 298 298 TYR TYR A . n A 1 51 LEU 51 299 299 LEU LEU A . n A 1 52 LEU 52 300 300 LEU LEU A . n A 1 53 LYS 53 301 301 LYS LYS A . n A 1 54 THR 54 302 302 THR THR A . n A 1 55 TYR 55 303 303 TYR TYR A . n A 1 56 ASN 56 304 304 ASN ASN A . n A 1 57 ALA 57 305 305 ALA ALA A . n A 1 58 PHE 58 306 306 PHE PHE A . n A 1 59 LYS 59 307 307 LYS LYS A . n A 1 60 ASP 60 308 308 ASP ASP A . n A 1 61 LYS 61 309 309 LYS LYS A . n A 1 62 GLY 62 310 310 GLY GLY A . n A 1 63 PHE 63 311 311 PHE PHE A . n A 1 64 THR 64 312 312 THR THR A . n A 1 65 ILE 65 313 313 ILE ILE A . n A 1 66 TYR 66 314 314 TYR TYR A . n A 1 67 GLY 67 315 315 GLY GLY A . n A 1 68 VAL 68 316 316 VAL VAL A . n A 1 69 SER 69 317 317 SER SER A . n A 1 70 THR 70 318 318 THR THR A . n A 1 71 ASP 71 319 319 ASP ASP A . n A 1 72 ARG 72 320 320 ARG ARG A . n A 1 73 ARG 73 321 321 ARG ARG A . n A 1 74 GLU 74 322 322 GLU GLU A . n A 1 75 GLU 75 323 323 GLU GLU A . n A 1 76 ASP 76 324 324 ASP ASP A . n A 1 77 TRP 77 325 325 TRP TRP A . n A 1 78 LYS 78 326 326 LYS LYS A . n A 1 79 LYS 79 327 327 LYS LYS A . n A 1 80 ALA 80 328 328 ALA ALA A . n A 1 81 ILE 81 329 329 ILE ILE A . n A 1 82 GLU 82 330 330 GLU GLU A . n A 1 83 GLU 83 331 331 GLU GLU A . n A 1 84 ASP 84 332 332 ASP ASP A . n A 1 85 LYS 85 333 333 LYS LYS A . n A 1 86 SER 86 334 334 SER SER A . n A 1 87 TYR 87 335 335 TYR TYR A . n A 1 88 TRP 88 336 336 TRP TRP A . n A 1 89 ASN 89 337 337 ASN ASN A . n A 1 90 GLN 90 338 338 GLN GLN A . n A 1 91 VAL 91 339 339 VAL VAL A . n A 1 92 LEU 92 340 340 LEU LEU A . n A 1 93 LEU 93 341 341 LEU LEU A . n A 1 94 GLN 94 342 342 GLN GLN A . n A 1 95 LYS 95 343 343 LYS LYS A . n A 1 96 ASP 96 344 344 ASP ASP A . n A 1 97 ASP 97 345 345 ASP ASP A . n A 1 98 VAL 98 346 346 VAL VAL A . n A 1 99 LYS 99 347 347 LYS LYS A . n A 1 100 ASP 100 348 348 ASP ASP A . n A 1 101 VAL 101 349 349 VAL VAL A . n A 1 102 LEU 102 350 350 LEU LEU A . n A 1 103 GLU 103 351 351 GLU GLU A . n A 1 104 SER 104 352 352 SER SER A . n A 1 105 TYR 105 353 353 TYR TYR A . n A 1 106 CYS 106 354 354 CYS CYS A . n A 1 107 ILE 107 355 355 ILE ILE A . n A 1 108 VAL 108 356 356 VAL VAL A . n A 1 109 GLY 109 357 357 GLY GLY A . n A 1 110 PHE 110 358 358 PHE PHE A . n A 1 111 PRO 111 359 359 PRO PRO A . n A 1 112 HIS 112 360 360 HIS HIS A . n A 1 113 ILE 113 361 361 ILE ILE A . n A 1 114 ILE 114 362 362 ILE ILE A . n A 1 115 LEU 115 363 363 LEU LEU A . n A 1 116 VAL 116 364 364 VAL VAL A . n A 1 117 ASP 117 365 365 ASP ASP A . n A 1 118 PRO 118 366 366 PRO PRO A . n A 1 119 GLU 119 367 367 GLU GLU A . n A 1 120 GLY 120 368 368 GLY GLY A . n A 1 121 LYS 121 369 369 LYS LYS A . n A 1 122 ILE 122 370 370 ILE ILE A . n A 1 123 VAL 123 371 371 VAL VAL A . n A 1 124 ALA 124 372 372 ALA ALA A . n A 1 125 LYS 125 373 373 LYS LYS A . n A 1 126 GLU 126 374 374 GLU GLU A . n A 1 127 LEU 127 375 375 LEU LEU A . n A 1 128 ARG 128 376 376 ARG ARG A . n A 1 129 GLY 129 377 377 GLY GLY A . n A 1 130 ASP 130 378 378 ASP ASP A . n A 1 131 ASP 131 379 379 ASP ASP A . n A 1 132 LEU 132 380 380 LEU LEU A . n A 1 133 TYR 133 381 381 TYR TYR A . n A 1 134 ASN 134 382 382 ASN ASN A . n A 1 135 THR 135 383 383 THR THR A . n A 1 136 VAL 136 384 384 VAL VAL A . n A 1 137 GLU 137 385 385 GLU GLU A . n A 1 138 LYS 138 386 386 LYS LYS A . n A 1 139 PHE 139 387 387 PHE PHE A . n A 1 140 VAL 140 388 388 VAL VAL A . n A 1 141 ASN 141 389 389 ASN ASN A . n A 1 142 GLY 142 390 ? ? ? A . n A 1 143 ALA 143 391 ? ? ? A . n A 1 144 LYS 144 392 ? ? ? A . n A 1 145 GLU 145 393 ? ? ? A . n A 1 146 GLY 146 394 ? ? ? A . n A 1 147 HIS 147 395 ? ? ? A . n A 1 148 HIS 148 396 ? ? ? A . n A 1 149 HIS 149 397 ? ? ? A . n A 1 150 HIS 150 398 ? ? ? A . n A 1 151 HIS 151 399 ? ? ? A . n A 1 152 HIS 152 400 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'Enzyme Function Initiative' _pdbx_SG_project.full_name_of_center ? _pdbx_SG_project.initial_of_center ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 501 1 CL CL A . C 2 CL 1 502 1 CL CL A . D 2 CL 1 503 1 CL CL A . E 3 SO4 1 504 1 SO4 SO4 A . F 2 CL 1 505 1 CL CL A . G 2 CL 1 506 1 CL CL A . H 4 GSH 1 507 1 GSH UNL A . I 5 HOH 1 601 5 HOH HOH A . I 5 HOH 2 602 6 HOH HOH A . I 5 HOH 3 603 7 HOH HOH A . I 5 HOH 4 604 9 HOH HOH A . I 5 HOH 5 605 13 HOH HOH A . I 5 HOH 6 606 14 HOH HOH A . I 5 HOH 7 607 15 HOH HOH A . I 5 HOH 8 608 16 HOH HOH A . I 5 HOH 9 609 18 HOH HOH A . I 5 HOH 10 610 19 HOH HOH A . I 5 HOH 11 611 20 HOH HOH A . I 5 HOH 12 612 22 HOH HOH A . I 5 HOH 13 613 23 HOH HOH A . I 5 HOH 14 614 24 HOH HOH A . I 5 HOH 15 615 26 HOH HOH A . I 5 HOH 16 616 27 HOH HOH A . I 5 HOH 17 617 28 HOH HOH A . I 5 HOH 18 618 29 HOH HOH A . I 5 HOH 19 619 30 HOH HOH A . I 5 HOH 20 620 32 HOH HOH A . I 5 HOH 21 621 33 HOH HOH A . I 5 HOH 22 622 35 HOH HOH A . I 5 HOH 23 623 37 HOH HOH A . I 5 HOH 24 624 38 HOH HOH A . I 5 HOH 25 625 40 HOH HOH A . I 5 HOH 26 626 41 HOH HOH A . I 5 HOH 27 627 42 HOH HOH A . I 5 HOH 28 628 47 HOH HOH A . I 5 HOH 29 629 49 HOH HOH A . I 5 HOH 30 630 50 HOH HOH A . I 5 HOH 31 631 51 HOH HOH A . I 5 HOH 32 632 52 HOH HOH A . I 5 HOH 33 633 53 HOH HOH A . I 5 HOH 34 634 54 HOH HOH A . I 5 HOH 35 635 57 HOH HOH A . I 5 HOH 36 636 58 HOH HOH A . I 5 HOH 37 637 59 HOH HOH A . I 5 HOH 38 638 60 HOH HOH A . I 5 HOH 39 639 62 HOH HOH A . I 5 HOH 40 640 63 HOH HOH A . I 5 HOH 41 641 65 HOH HOH A . I 5 HOH 42 642 66 HOH HOH A . I 5 HOH 43 643 68 HOH HOH A . I 5 HOH 44 644 69 HOH HOH A . I 5 HOH 45 645 72 HOH HOH A . I 5 HOH 46 646 74 HOH HOH A . I 5 HOH 47 647 76 HOH HOH A . I 5 HOH 48 648 78 HOH HOH A . I 5 HOH 49 649 79 HOH HOH A . I 5 HOH 50 650 80 HOH HOH A . I 5 HOH 51 651 81 HOH HOH A . I 5 HOH 52 652 82 HOH HOH A . I 5 HOH 53 653 87 HOH HOH A . I 5 HOH 54 654 90 HOH HOH A . I 5 HOH 55 655 91 HOH HOH A . I 5 HOH 56 656 92 HOH HOH A . I 5 HOH 57 657 99 HOH HOH A . I 5 HOH 58 658 100 HOH HOH A . I 5 HOH 59 659 101 HOH HOH A . I 5 HOH 60 660 102 HOH HOH A . I 5 HOH 61 661 103 HOH HOH A . I 5 HOH 62 662 105 HOH HOH A . I 5 HOH 63 663 106 HOH HOH A . I 5 HOH 64 664 108 HOH HOH A . I 5 HOH 65 665 110 HOH HOH A . I 5 HOH 66 666 114 HOH HOH A . I 5 HOH 67 667 119 HOH HOH A . I 5 HOH 68 668 124 HOH HOH A . I 5 HOH 69 669 127 HOH HOH A . I 5 HOH 70 670 128 HOH HOH A . I 5 HOH 71 671 129 HOH HOH A . I 5 HOH 72 672 130 HOH HOH A . I 5 HOH 73 673 133 HOH HOH A . I 5 HOH 74 674 134 HOH HOH A . I 5 HOH 75 675 136 HOH HOH A . I 5 HOH 76 676 137 HOH HOH A . I 5 HOH 77 677 138 HOH HOH A . I 5 HOH 78 678 139 HOH HOH A . I 5 HOH 79 679 142 HOH HOH A . I 5 HOH 80 680 144 HOH HOH A . I 5 HOH 81 681 147 HOH HOH A . I 5 HOH 82 682 152 HOH HOH A . I 5 HOH 83 683 155 HOH HOH A . I 5 HOH 84 684 156 HOH HOH A . I 5 HOH 85 685 158 HOH HOH A . I 5 HOH 86 686 165 HOH HOH A . I 5 HOH 87 687 166 HOH HOH A . I 5 HOH 88 688 169 HOH HOH A . I 5 HOH 89 689 170 HOH HOH A . I 5 HOH 90 690 171 HOH HOH A . I 5 HOH 91 691 172 HOH HOH A . I 5 HOH 92 692 173 HOH HOH A . I 5 HOH 93 693 174 HOH HOH A . I 5 HOH 94 694 175 HOH HOH A . I 5 HOH 95 695 176 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-10 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.7.0029 ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 335 ? ? -91.34 51.02 2 1 TRP A 336 ? ? -95.33 -158.59 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 301 ? CE ? A LYS 53 CE 2 1 Y 1 A LYS 301 ? NZ ? A LYS 53 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 249 ? A MET 1 2 1 Y 1 A GLY 390 ? A GLY 142 3 1 Y 1 A ALA 391 ? A ALA 143 4 1 Y 1 A LYS 392 ? A LYS 144 5 1 Y 1 A GLU 393 ? A GLU 145 6 1 Y 1 A GLY 394 ? A GLY 146 7 1 Y 1 A HIS 395 ? A HIS 147 8 1 Y 1 A HIS 396 ? A HIS 148 9 1 Y 1 A HIS 397 ? A HIS 149 10 1 Y 1 A HIS 398 ? A HIS 150 11 1 Y 1 A HIS 399 ? A HIS 151 12 1 Y 1 A HIS 400 ? A HIS 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GSH N1 N N N 138 GSH CA1 C N S 139 GSH C1 C N N 140 GSH O11 O N N 141 GSH O12 O N N 142 GSH CB1 C N N 143 GSH CG1 C N N 144 GSH CD1 C N N 145 GSH OE1 O N N 146 GSH N2 N N N 147 GSH CA2 C N R 148 GSH C2 C N N 149 GSH O2 O N N 150 GSH CB2 C N N 151 GSH SG2 S N N 152 GSH N3 N N N 153 GSH CA3 C N N 154 GSH C3 C N N 155 GSH O31 O N N 156 GSH O32 O N N 157 GSH HN11 H N N 158 GSH HN12 H N N 159 GSH HA1 H N N 160 GSH H12 H N N 161 GSH HB12 H N N 162 GSH HB13 H N N 163 GSH HG12 H N N 164 GSH HG13 H N N 165 GSH HN2 H N N 166 GSH HA2 H N N 167 GSH HB22 H N N 168 GSH HB23 H N N 169 GSH HSG H N N 170 GSH HN3 H N N 171 GSH HA31 H N N 172 GSH HA32 H N N 173 GSH H32 H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 SO4 S S N N 342 SO4 O1 O N N 343 SO4 O2 O N N 344 SO4 O3 O N N 345 SO4 O4 O N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TRP N N N N 364 TRP CA C N S 365 TRP C C N N 366 TRP O O N N 367 TRP CB C N N 368 TRP CG C Y N 369 TRP CD1 C Y N 370 TRP CD2 C Y N 371 TRP NE1 N Y N 372 TRP CE2 C Y N 373 TRP CE3 C Y N 374 TRP CZ2 C Y N 375 TRP CZ3 C Y N 376 TRP CH2 C Y N 377 TRP OXT O N N 378 TRP H H N N 379 TRP H2 H N N 380 TRP HA H N N 381 TRP HB2 H N N 382 TRP HB3 H N N 383 TRP HD1 H N N 384 TRP HE1 H N N 385 TRP HE3 H N N 386 TRP HZ2 H N N 387 TRP HZ3 H N N 388 TRP HH2 H N N 389 TRP HXT H N N 390 TYR N N N N 391 TYR CA C N S 392 TYR C C N N 393 TYR O O N N 394 TYR CB C N N 395 TYR CG C Y N 396 TYR CD1 C Y N 397 TYR CD2 C Y N 398 TYR CE1 C Y N 399 TYR CE2 C Y N 400 TYR CZ C Y N 401 TYR OH O N N 402 TYR OXT O N N 403 TYR H H N N 404 TYR H2 H N N 405 TYR HA H N N 406 TYR HB2 H N N 407 TYR HB3 H N N 408 TYR HD1 H N N 409 TYR HD2 H N N 410 TYR HE1 H N N 411 TYR HE2 H N N 412 TYR HH H N N 413 TYR HXT H N N 414 VAL N N N N 415 VAL CA C N S 416 VAL C C N N 417 VAL O O N N 418 VAL CB C N N 419 VAL CG1 C N N 420 VAL CG2 C N N 421 VAL OXT O N N 422 VAL H H N N 423 VAL H2 H N N 424 VAL HA H N N 425 VAL HB H N N 426 VAL HG11 H N N 427 VAL HG12 H N N 428 VAL HG13 H N N 429 VAL HG21 H N N 430 VAL HG22 H N N 431 VAL HG23 H N N 432 VAL HXT H N N 433 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GSH N1 CA1 sing N N 129 GSH N1 HN11 sing N N 130 GSH N1 HN12 sing N N 131 GSH CA1 C1 sing N N 132 GSH CA1 CB1 sing N N 133 GSH CA1 HA1 sing N N 134 GSH C1 O11 doub N N 135 GSH C1 O12 sing N N 136 GSH O12 H12 sing N N 137 GSH CB1 CG1 sing N N 138 GSH CB1 HB12 sing N N 139 GSH CB1 HB13 sing N N 140 GSH CG1 CD1 sing N N 141 GSH CG1 HG12 sing N N 142 GSH CG1 HG13 sing N N 143 GSH CD1 OE1 doub N N 144 GSH CD1 N2 sing N N 145 GSH N2 CA2 sing N N 146 GSH N2 HN2 sing N N 147 GSH CA2 C2 sing N N 148 GSH CA2 CB2 sing N N 149 GSH CA2 HA2 sing N N 150 GSH C2 O2 doub N N 151 GSH C2 N3 sing N N 152 GSH CB2 SG2 sing N N 153 GSH CB2 HB22 sing N N 154 GSH CB2 HB23 sing N N 155 GSH SG2 HSG sing N N 156 GSH N3 CA3 sing N N 157 GSH N3 HN3 sing N N 158 GSH CA3 C3 sing N N 159 GSH CA3 HA31 sing N N 160 GSH CA3 HA32 sing N N 161 GSH C3 O31 doub N N 162 GSH C3 O32 sing N N 163 GSH O32 H32 sing N N 164 HIS N CA sing N N 165 HIS N H sing N N 166 HIS N H2 sing N N 167 HIS CA C sing N N 168 HIS CA CB sing N N 169 HIS CA HA sing N N 170 HIS C O doub N N 171 HIS C OXT sing N N 172 HIS CB CG sing N N 173 HIS CB HB2 sing N N 174 HIS CB HB3 sing N N 175 HIS CG ND1 sing Y N 176 HIS CG CD2 doub Y N 177 HIS ND1 CE1 doub Y N 178 HIS ND1 HD1 sing N N 179 HIS CD2 NE2 sing Y N 180 HIS CD2 HD2 sing N N 181 HIS CE1 NE2 sing Y N 182 HIS CE1 HE1 sing N N 183 HIS NE2 HE2 sing N N 184 HIS OXT HXT sing N N 185 HOH O H1 sing N N 186 HOH O H2 sing N N 187 ILE N CA sing N N 188 ILE N H sing N N 189 ILE N H2 sing N N 190 ILE CA C sing N N 191 ILE CA CB sing N N 192 ILE CA HA sing N N 193 ILE C O doub N N 194 ILE C OXT sing N N 195 ILE CB CG1 sing N N 196 ILE CB CG2 sing N N 197 ILE CB HB sing N N 198 ILE CG1 CD1 sing N N 199 ILE CG1 HG12 sing N N 200 ILE CG1 HG13 sing N N 201 ILE CG2 HG21 sing N N 202 ILE CG2 HG22 sing N N 203 ILE CG2 HG23 sing N N 204 ILE CD1 HD11 sing N N 205 ILE CD1 HD12 sing N N 206 ILE CD1 HD13 sing N N 207 ILE OXT HXT sing N N 208 LEU N CA sing N N 209 LEU N H sing N N 210 LEU N H2 sing N N 211 LEU CA C sing N N 212 LEU CA CB sing N N 213 LEU CA HA sing N N 214 LEU C O doub N N 215 LEU C OXT sing N N 216 LEU CB CG sing N N 217 LEU CB HB2 sing N N 218 LEU CB HB3 sing N N 219 LEU CG CD1 sing N N 220 LEU CG CD2 sing N N 221 LEU CG HG sing N N 222 LEU CD1 HD11 sing N N 223 LEU CD1 HD12 sing N N 224 LEU CD1 HD13 sing N N 225 LEU CD2 HD21 sing N N 226 LEU CD2 HD22 sing N N 227 LEU CD2 HD23 sing N N 228 LEU OXT HXT sing N N 229 LYS N CA sing N N 230 LYS N H sing N N 231 LYS N H2 sing N N 232 LYS CA C sing N N 233 LYS CA CB sing N N 234 LYS CA HA sing N N 235 LYS C O doub N N 236 LYS C OXT sing N N 237 LYS CB CG sing N N 238 LYS CB HB2 sing N N 239 LYS CB HB3 sing N N 240 LYS CG CD sing N N 241 LYS CG HG2 sing N N 242 LYS CG HG3 sing N N 243 LYS CD CE sing N N 244 LYS CD HD2 sing N N 245 LYS CD HD3 sing N N 246 LYS CE NZ sing N N 247 LYS CE HE2 sing N N 248 LYS CE HE3 sing N N 249 LYS NZ HZ1 sing N N 250 LYS NZ HZ2 sing N N 251 LYS NZ HZ3 sing N N 252 LYS OXT HXT sing N N 253 MET N CA sing N N 254 MET N H sing N N 255 MET N H2 sing N N 256 MET CA C sing N N 257 MET CA CB sing N N 258 MET CA HA sing N N 259 MET C O doub N N 260 MET C OXT sing N N 261 MET CB CG sing N N 262 MET CB HB2 sing N N 263 MET CB HB3 sing N N 264 MET CG SD sing N N 265 MET CG HG2 sing N N 266 MET CG HG3 sing N N 267 MET SD CE sing N N 268 MET CE HE1 sing N N 269 MET CE HE2 sing N N 270 MET CE HE3 sing N N 271 MET OXT HXT sing N N 272 PHE N CA sing N N 273 PHE N H sing N N 274 PHE N H2 sing N N 275 PHE CA C sing N N 276 PHE CA CB sing N N 277 PHE CA HA sing N N 278 PHE C O doub N N 279 PHE C OXT sing N N 280 PHE CB CG sing N N 281 PHE CB HB2 sing N N 282 PHE CB HB3 sing N N 283 PHE CG CD1 doub Y N 284 PHE CG CD2 sing Y N 285 PHE CD1 CE1 sing Y N 286 PHE CD1 HD1 sing N N 287 PHE CD2 CE2 doub Y N 288 PHE CD2 HD2 sing N N 289 PHE CE1 CZ doub Y N 290 PHE CE1 HE1 sing N N 291 PHE CE2 CZ sing Y N 292 PHE CE2 HE2 sing N N 293 PHE CZ HZ sing N N 294 PHE OXT HXT sing N N 295 PRO N CA sing N N 296 PRO N CD sing N N 297 PRO N H sing N N 298 PRO CA C sing N N 299 PRO CA CB sing N N 300 PRO CA HA sing N N 301 PRO C O doub N N 302 PRO C OXT sing N N 303 PRO CB CG sing N N 304 PRO CB HB2 sing N N 305 PRO CB HB3 sing N N 306 PRO CG CD sing N N 307 PRO CG HG2 sing N N 308 PRO CG HG3 sing N N 309 PRO CD HD2 sing N N 310 PRO CD HD3 sing N N 311 PRO OXT HXT sing N N 312 SER N CA sing N N 313 SER N H sing N N 314 SER N H2 sing N N 315 SER CA C sing N N 316 SER CA CB sing N N 317 SER CA HA sing N N 318 SER C O doub N N 319 SER C OXT sing N N 320 SER CB OG sing N N 321 SER CB HB2 sing N N 322 SER CB HB3 sing N N 323 SER OG HG sing N N 324 SER OXT HXT sing N N 325 SO4 S O1 doub N N 326 SO4 S O2 doub N N 327 SO4 S O3 sing N N 328 SO4 S O4 sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SULFATE ION' SO4 4 GLUTATHIONE GSH 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2LRN _pdbx_initial_refinement_model.details 'PDB ENTRY 2LRN' #