HEADER LIGASE 27-AUG-12 4GS5 TITLE THE CRYSTAL STRUCTURE OF ACYL-COA SYNTHETASE (AMP-FORMING)/AMP-ACID TITLE 2 LIGASE II-LIKE PROTEIN FROM DYADOBACTER FERMENTANS DSM 18053 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA SYNTHETASE (AMP-FORMING)/AMP-ACID LIGASE II-LIKE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DYADOBACTER FERMENTANS; SOURCE 3 ORGANISM_TAXID: 471854; SOURCE 4 STRAIN: DSM 18053; SOURCE 5 GENE: DFER_1215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, MCSG, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,J.HOLOWICKI,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 12-SEP-12 4GS5 0 JRNL AUTH K.TAN,J.HOLOWICKI,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF ACYL-COA SYNTHETASE JRNL TITL 2 (AMP-FORMING)/AMP-ACID LIGASE II-LIKE PROTEIN FROM JRNL TITL 3 DYADOBACTER FERMENTANS DSM 18053 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9854 - 4.3444 0.98 2796 121 0.1741 0.1937 REMARK 3 2 4.3444 - 3.4495 1.00 2659 139 0.1675 0.2401 REMARK 3 3 3.4495 - 3.0138 1.00 2614 147 0.2110 0.2645 REMARK 3 4 3.0138 - 2.7384 1.00 2586 151 0.2209 0.2841 REMARK 3 5 2.7384 - 2.5422 1.00 2573 143 0.2224 0.3008 REMARK 3 6 2.5422 - 2.3923 1.00 2555 144 0.2256 0.3082 REMARK 3 7 2.3923 - 2.2726 1.00 2549 147 0.2138 0.2880 REMARK 3 8 2.2726 - 2.1737 1.00 2551 132 0.2093 0.2607 REMARK 3 9 2.1737 - 2.0900 1.00 2556 129 0.2141 0.2909 REMARK 3 10 2.0900 - 2.0179 1.00 2561 120 0.2276 0.2840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 33.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.38290 REMARK 3 B22 (A**2) : 3.38290 REMARK 3 B33 (A**2) : -6.76580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2790 REMARK 3 ANGLE : 1.015 3768 REMARK 3 CHIRALITY : 0.069 427 REMARK 3 PLANARITY : 0.004 483 REMARK 3 DIHEDRAL : 15.012 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8177 31.2517 -18.7229 REMARK 3 T TENSOR REMARK 3 T11: 0.4837 T22: 1.5166 REMARK 3 T33: -0.1963 T12: 0.4504 REMARK 3 T13: -0.0231 T23: 0.3434 REMARK 3 L TENSOR REMARK 3 L11: 1.2642 L22: 1.4320 REMARK 3 L33: 6.0224 L12: 0.3414 REMARK 3 L13: -0.1696 L23: 0.2047 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.7475 S13: 0.1378 REMARK 3 S21: -0.4679 S22: -0.2569 S23: 0.0528 REMARK 3 S31: -0.0510 S32: -0.0933 S33: 0.0602 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 19:69) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8647 16.8786 -10.7174 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.7170 REMARK 3 T33: 0.1502 T12: -0.0221 REMARK 3 T13: -0.0423 T23: -0.1183 REMARK 3 L TENSOR REMARK 3 L11: 1.9787 L22: 0.5133 REMARK 3 L33: 0.0651 L12: -0.8238 REMARK 3 L13: -0.3180 L23: 0.1188 REMARK 3 S TENSOR REMARK 3 S11: 0.2393 S12: 1.2861 S13: 0.1043 REMARK 3 S21: -0.4569 S22: -0.3546 S23: 0.0511 REMARK 3 S31: -0.0686 S32: -0.6552 S33: 0.0973 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 70:127) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4686 29.9914 -5.1629 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.5016 REMARK 3 T33: 0.2094 T12: 0.1254 REMARK 3 T13: 0.0178 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 5.9715 L22: 1.3393 REMARK 3 L33: 2.8656 L12: 0.4941 REMARK 3 L13: -0.5504 L23: 0.2851 REMARK 3 S TENSOR REMARK 3 S11: 0.2504 S12: 1.1286 S13: 0.6037 REMARK 3 S21: -0.2995 S22: -0.1709 S23: -0.0903 REMARK 3 S31: 0.0272 S32: 0.0799 S33: -0.0559 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 128:177) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9032 33.6444 7.3907 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.3016 REMARK 3 T33: 0.3021 T12: 0.0101 REMARK 3 T13: 0.0245 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.9284 L22: 6.2648 REMARK 3 L33: 2.6808 L12: -0.1727 REMARK 3 L13: -0.9358 L23: -0.2408 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.1475 S13: 0.5890 REMARK 3 S21: 0.1768 S22: -0.0185 S23: -0.3872 REMARK 3 S31: -0.2426 S32: 0.1471 S33: -0.0941 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 178:198) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7315 19.9063 9.9259 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2752 REMARK 3 T33: 0.1559 T12: -0.0199 REMARK 3 T13: 0.0221 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.1915 L22: 4.3506 REMARK 3 L33: 4.5756 L12: -1.3139 REMARK 3 L13: -1.5416 L23: 4.4283 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 0.2867 S13: -0.1645 REMARK 3 S21: 0.1530 S22: 0.0332 S23: 0.0946 REMARK 3 S31: 0.3491 S32: -0.2450 S33: 0.1018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 199:230) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6748 6.8938 8.9969 REMARK 3 T TENSOR REMARK 3 T11: 0.3910 T22: 0.2329 REMARK 3 T33: 0.2858 T12: -0.1113 REMARK 3 T13: 0.0787 T23: -0.0745 REMARK 3 L TENSOR REMARK 3 L11: 5.8416 L22: 2.8147 REMARK 3 L33: 4.0349 L12: -0.2244 REMARK 3 L13: 1.2835 L23: -0.4811 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.2828 S13: -0.5757 REMARK 3 S21: -0.2077 S22: -0.0346 S23: 0.1041 REMARK 3 S31: 1.0239 S32: -0.4769 S33: -0.0332 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resseq 231:254) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7051 9.9334 19.5539 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.1517 REMARK 3 T33: 0.2038 T12: -0.0055 REMARK 3 T13: 0.0317 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 4.4267 L22: 1.9904 REMARK 3 L33: 6.5288 L12: -0.9801 REMARK 3 L13: 4.8190 L23: -2.5735 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.0196 S13: -0.0767 REMARK 3 S21: 0.1187 S22: -0.2120 S23: -0.1386 REMARK 3 S31: 0.6851 S32: 0.1716 S33: 0.1433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resseq 255:314) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8326 7.2679 29.0315 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.1905 REMARK 3 T33: 0.2734 T12: 0.1049 REMARK 3 T13: 0.0139 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 6.1184 L22: 3.0007 REMARK 3 L33: 3.2003 L12: 0.9652 REMARK 3 L13: -0.7268 L23: 0.5874 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: -0.0685 S13: 0.1819 REMARK 3 S21: 0.2106 S22: -0.1477 S23: -0.3273 REMARK 3 S31: 0.2580 S32: 0.5940 S33: 0.0371 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resseq 315:350) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1655 1.4085 23.7686 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.3483 REMARK 3 T33: 0.3949 T12: 0.1633 REMARK 3 T13: 0.0962 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 3.8280 L22: 1.6073 REMARK 3 L33: 4.3519 L12: -1.8107 REMARK 3 L13: -2.1750 L23: -0.3833 REMARK 3 S TENSOR REMARK 3 S11: -0.4189 S12: 0.2794 S13: -0.3098 REMARK 3 S21: -0.0229 S22: -0.2474 S23: 0.0497 REMARK 3 S31: 0.9503 S32: 0.5685 S33: 0.5213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB074568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.018 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM IODINE, 20% (W/V) REMARK 280 PEG3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.12850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.19275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.06425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.12850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.06425 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 132.19275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE MOLECULE IS PREDICTED TO BE A REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 351 REMARK 465 SER A 352 REMARK 465 SER A 353 REMARK 465 ASN A 354 REMARK 465 GLY A 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I IOD A 412 O HOH A 650 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 16 150.65 -48.55 REMARK 500 SER A 138 2.67 -66.85 REMARK 500 VAL A 182 -66.68 67.39 REMARK 500 SER A 183 -138.48 -136.91 REMARK 500 ASN A 238 41.78 -84.86 REMARK 500 ASN A 299 141.28 72.01 REMARK 500 LEU A 349 -16.42 -49.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC103395 RELATED DB: TARGETTRACK DBREF 4GS5 A 1 355 UNP C6W5A4 C6W5A4_DYAFD 1 355 SEQADV 4GS5 SER A -2 UNP C6W5A4 EXPRESSION TAG SEQADV 4GS5 ASN A -1 UNP C6W5A4 EXPRESSION TAG SEQADV 4GS5 ALA A 0 UNP C6W5A4 EXPRESSION TAG SEQRES 1 A 358 SER ASN ALA MSE ILE TRP THR THR GLY LYS THR LEU CYS SEQRES 2 A 358 LYS THR GLN LYS ARG PRO ARG ASN PRO TYR PHE ALA GLN SEQRES 3 A 358 ALA TYR ASP PHE MSE GLU LYS TRP LEU GLY GLY ALA ARG SEQRES 4 A 358 GLU PHE VAL LEU HIS THR SER GLY SER THR GLY MSE PRO SEQRES 5 A 358 LYS PRO ILE THR VAL THR ARG ALA GLN LEU ALA ALA SER SEQRES 6 A 358 ALA ALA MSE THR GLY LYS ALA LEU SER LEU GLY PRO GLY SEQRES 7 A 358 THR ARG ALA LEU VAL CYS LEU ASN VAL GLY TYR ILE ALA SEQRES 8 A 358 GLY LEU MSE MSE LEU VAL ARG GLY MSE GLU LEU ASP TRP SEQRES 9 A 358 GLU LEU THR VAL THR GLU PRO THR ALA ASN PRO LEU ALA SEQRES 10 A 358 GLY LEU ASP HIS ALA ASP PHE ASP PHE VAL ALA MSE VAL SEQRES 11 A 358 PRO MSE GLN LEU GLN SER ILE LEU GLU ASN SER ALA THR SEQRES 12 A 358 SER GLY GLN VAL ASP ARG LEU GLY LYS VAL LEU LEU GLY SEQRES 13 A 358 GLY ALA PRO VAL ASN HIS ALA LEU ALA MSE GLN ILE SER SEQRES 14 A 358 ASP LEU ALA MSE PRO VAL TYR GLN SER TYR GLY MSE THR SEQRES 15 A 358 GLU THR VAL SER HIS VAL ALA LEU LYS ALA LEU ASN GLY SEQRES 16 A 358 PRO GLU ALA SER GLU LEU TYR VAL PHE LEU PRO GLY ILE SEQRES 17 A 358 GLN TYR GLY VAL ASP GLU ARG GLY CYS LEU HIS ILE SER SEQRES 18 A 358 GLY ALA VAL THR ASN GLY GLN THR VAL GLN THR ASN ASP SEQRES 19 A 358 LEU VAL GLU ILE HIS GLY ASN ALA PHE GLN TRP ILE GLY SEQRES 20 A 358 ARG ALA ASP ASN VAL ILE ASN SER GLY GLY VAL LYS ILE SEQRES 21 A 358 VAL LEU ASP GLN ILE ASP GLN ARG ILE ALA ALA VAL PHE SEQRES 22 A 358 HIS HIS LEU ASN ILE GLY ASN ALA PHE PHE CYS TRP TRP SEQRES 23 A 358 GLU PRO ASP ALA LYS LEU GLY GLN LYS LEU VAL LEU VAL SEQRES 24 A 358 ILE GLU ASN ALA MSE PRO GLU ALA LEU THR GLU ARG LEU SEQRES 25 A 358 THR ALA GLU ILE ARG SER ARG VAL SER THR TYR GLU ASN SEQRES 26 A 358 PRO LYS HIS ILE TYR PHE ALA LYS ALA PHE ALA LYS THR SEQRES 27 A 358 GLN THR ASP LYS ILE ASP LYS ARG ALA THR PHE GLN LYS SEQRES 28 A 358 LEU SER ASP SER SER ASN GLY MODRES 4GS5 MSE A 1 MET SELENOMETHIONINE MODRES 4GS5 MSE A 28 MET SELENOMETHIONINE MODRES 4GS5 MSE A 48 MET SELENOMETHIONINE MODRES 4GS5 MSE A 65 MET SELENOMETHIONINE MODRES 4GS5 MSE A 91 MET SELENOMETHIONINE MODRES 4GS5 MSE A 92 MET SELENOMETHIONINE MODRES 4GS5 MSE A 97 MET SELENOMETHIONINE MODRES 4GS5 MSE A 126 MET SELENOMETHIONINE MODRES 4GS5 MSE A 129 MET SELENOMETHIONINE MODRES 4GS5 MSE A 163 MET SELENOMETHIONINE MODRES 4GS5 MSE A 170 MET SELENOMETHIONINE MODRES 4GS5 MSE A 178 MET SELENOMETHIONINE MODRES 4GS5 MSE A 301 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 28 8 HET MSE A 48 8 HET MSE A 65 8 HET MSE A 91 8 HET MSE A 92 8 HET MSE A 97 8 HET MSE A 126 8 HET MSE A 129 8 HET MSE A 163 8 HET MSE A 170 8 HET MSE A 178 8 HET MSE A 301 8 HET IOD A 401 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 404 1 HET IOD A 405 1 HET IOD A 406 1 HET IOD A 407 1 HET IOD A 408 1 HET IOD A 409 1 HET IOD A 410 1 HET IOD A 411 1 HET IOD A 412 1 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HET EDO A 418 4 HET EDO A 419 4 HET EDO A 420 4 HET EDO A 421 4 HET EDO A 422 4 HET EDO A 423 4 HET EDO A 424 4 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 IOD 12(I 1-) FORMUL 14 EDO 12(C2 H6 O2) FORMUL 26 HOH *155(H2 O) HELIX 1 1 THR A 8 THR A 12 5 5 HELIX 2 2 ASN A 18 GLY A 34 1 17 HELIX 3 3 ARG A 56 LEU A 70 1 15 HELIX 4 4 TYR A 86 ASP A 100 1 15 HELIX 5 5 VAL A 127 ASN A 137 1 11 HELIX 6 6 THR A 140 GLY A 148 5 9 HELIX 7 7 ASN A 158 ASP A 167 1 10 HELIX 8 8 THR A 179 VAL A 182 5 4 HELIX 9 9 GLY A 219 ASN A 223 5 5 HELIX 10 10 LEU A 259 LEU A 273 1 15 HELIX 11 11 PRO A 302 VAL A 317 1 16 HELIX 12 12 SER A 318 ASN A 322 5 5 HELIX 13 13 ASP A 341 LEU A 349 1 9 SHEET 1 A12 ILE A 2 THR A 5 0 SHEET 2 A12 GLU A 102 THR A 106 -1 O LEU A 103 N THR A 5 SHEET 3 A12 ARG A 77 VAL A 80 1 N VAL A 80 O THR A 104 SHEET 4 A12 PHE A 123 MSE A 126 1 O PHE A 123 N LEU A 79 SHEET 5 A12 VAL A 150 LEU A 152 1 O LEU A 151 N MSE A 126 SHEET 6 A12 VAL A 172 GLY A 177 1 O TYR A 173 N LEU A 152 SHEET 7 A12 HIS A 184 ALA A 189 -1 O LYS A 188 N GLN A 174 SHEET 8 A12 TYR A 199 PHE A 201 -1 O VAL A 200 N LEU A 187 SHEET 9 A12 ALA A 239 ARG A 245 -1 O PHE A 240 N TYR A 199 SHEET 10 A12 VAL A 227 ILE A 235 -1 N LEU A 232 O ILE A 243 SHEET 11 A12 CYS A 214 SER A 218 -1 N ILE A 217 O VAL A 227 SHEET 12 A12 GLN A 206 VAL A 209 -1 N GLN A 206 O SER A 218 SHEET 1 B 2 GLU A 37 SER A 43 0 SHEET 2 B 2 PRO A 49 THR A 55 -1 O VAL A 54 N PHE A 38 SHEET 1 C 2 VAL A 249 SER A 252 0 SHEET 2 C 2 VAL A 255 VAL A 258 -1 O ILE A 257 N ILE A 250 SHEET 1 D 3 PHE A 279 ASP A 286 0 SHEET 2 D 3 GLY A 290 GLU A 298 -1 O LYS A 292 N GLU A 284 SHEET 3 D 3 ILE A 326 ALA A 329 1 O TYR A 327 N LEU A 295 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C PHE A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N GLU A 29 1555 1555 1.33 LINK C GLY A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N PRO A 49 1555 1555 1.35 LINK C ALA A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N THR A 66 1555 1555 1.33 LINK C LEU A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N LEU A 93 1555 1555 1.34 LINK C GLY A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N GLU A 98 1555 1555 1.33 LINK C ALA A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N VAL A 127 1555 1555 1.33 LINK C PRO A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N GLN A 130 1555 1555 1.32 LINK C ALA A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLN A 164 1555 1555 1.33 LINK C ALA A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N PRO A 171 1555 1555 1.34 LINK C GLY A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N THR A 179 1555 1555 1.33 LINK C ALA A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N PRO A 302 1555 1555 1.34 SITE 1 AC1 2 SER A 45 ARG A 245 SITE 1 AC2 2 GLN A 132 EDO A 422 SITE 1 AC3 1 EDO A 414 SITE 1 AC4 3 THR A 337 LYS A 339 HOH A 645 SITE 1 AC5 2 HIS A 41 IOD A 408 SITE 1 AC6 3 ARG A 245 ASN A 248 IOD A 407 SITE 1 AC7 1 ALA A 300 SITE 1 AC8 2 ASN A 111 ASN A 137 SITE 1 AC9 2 LEU A 9 HOH A 650 SITE 1 BC1 3 LEU A 82 ASN A 83 ALA A 88 SITE 1 BC2 5 LEU A 151 GLY A 153 SER A 175 SER A 183 SITE 2 BC2 5 IOD A 404 SITE 1 BC3 3 ARG A 36 ALA A 278 PHE A 279 SITE 1 BC4 4 SER A 45 GLU A 180 THR A 229 HOH A 561 SITE 1 BC5 5 ALA A 329 LYS A 330 LYS A 348 LEU A 349 SITE 2 BC5 5 HOH A 649 SITE 1 BC6 1 HOH A 506 SITE 1 BC7 4 GLY A 67 SER A 71 LEU A 72 HOH A 559 SITE 1 BC8 3 LYS A 30 PHE A 38 VAL A 39 SITE 1 BC9 2 TYR A 20 GLN A 23 SITE 1 CC1 5 VAL A 127 PRO A 128 MSE A 129 IOD A 403 SITE 2 CC1 5 HOH A 527 SITE 1 CC2 5 ALA A 64 MSE A 65 LYS A 68 PRO A 203 SITE 2 CC2 5 HOH A 603 SITE 1 CC3 9 LEU A 168 MSE A 170 PRO A 171 ASN A 191 SITE 2 CC3 9 GLY A 192 GLU A 321 HOH A 508 HOH A 554 SITE 3 CC3 9 HOH A 643 CRYST1 67.148 67.148 176.257 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005674 0.00000 HETATM 1 N MSE A 1 23.537 38.983 -15.595 1.00 81.58 N ANISOU 1 N MSE A 1 8232 15719 7045 2179 407 2562 N HETATM 2 CA MSE A 1 24.135 38.100 -14.589 1.00 79.86 C ANISOU 2 CA MSE A 1 7789 15613 6943 2219 465 2515 C HETATM 3 C MSE A 1 23.103 37.326 -13.770 1.00 72.78 C ANISOU 3 C MSE A 1 6871 14605 6175 2373 516 2364 C HETATM 4 O MSE A 1 23.453 36.670 -12.783 1.00 72.03 O ANISOU 4 O MSE A 1 6648 14551 6169 2403 556 2321 O HETATM 5 CB MSE A 1 25.083 38.871 -13.661 1.00 83.58 C ANISOU 5 CB MSE A 1 8284 16090 7385 2007 410 2613 C HETATM 6 CG MSE A 1 26.551 38.662 -14.006 1.00 88.10 C ANISOU 6 CG MSE A 1 8635 16945 7893 1923 421 2719 C HETATM 7 SE MSE A 1 26.899 39.097 -15.882 0.57138.99 SE ANISOU 7 SE MSE A 1 15137 23512 14161 1868 401 2827 SE HETATM 8 CE MSE A 1 28.503 38.025 -16.178 1.00 92.19 C ANISOU 8 CE MSE A 1 8784 18025 8217 1933 467 2881 C