HEADER TRANSCRIPTION 27-AUG-12 4GS9 TITLE CRYSTAL STRUCTURE OF THE HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND TITLE 2 ARNT C-TERMINAL PAS DOMAINS IN COMPLEX WITH AN INACTIVE TITLE 3 BENZOXADIAZOLE ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HIF2 PAS-B DOMAIN, UNP RESIDUES 239-350; COMPND 5 SYNONYM: EPAS-1, BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2, CLASS E COMPND 6 BASIC HELIX-LOOP-HELIX PROTEIN 73, BHLHE73, HIF-1-ALPHA-LIKE FACTOR, COMPND 7 HLF, HYPOXIA-INDUCIBLE FACTOR 2-ALPHA, HIF-2-ALPHA, HIF2-ALPHA, COMPND 8 MEMBER OF PAS PROTEIN 2, PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: ARNT PAS-B DOMAIN, UNP RESIDUES 356-470; COMPND 15 SYNONYM: ARNT PROTEIN, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 2, COMPND 16 BHLHE2, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, HYPOXIA-INDUCIBLE COMPND 17 FACTOR 1-BETA, HIF-1-BETA, HIF1-BETA; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BHLHE73, EPAS1, HIF2, HIF2A, MOP2, PASD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CONDONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-GB1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ARNT, BHLHE2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CONDONPLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHIS-GB1 KEYWDS PAS FOLD, TRANSCRIPTION, PROTEIN-PROTEIN INTERACTIONS, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR T.H.SCHEUERMANN,K.H.GARDNER REVDAT 3 13-SEP-23 4GS9 1 REMARK SEQADV REVDAT 2 30-MAY-18 4GS9 1 REMARK REVDAT 1 03-APR-13 4GS9 0 JRNL AUTH J.L.ROGERS,L.BAYEH,T.H.SCHEUERMANN,J.LONGGOOD,J.KEY, JRNL AUTH 2 J.NAIDOO,L.MELITO,C.SHOKRI,D.E.FRANTZ,R.K.BRUICK, JRNL AUTH 3 K.H.GARDNER,J.B.MACMILLAN,U.K.TAMBAR JRNL TITL DEVELOPMENT OF INHIBITORS OF THE PAS-B DOMAIN OF THE HIF-2 JRNL TITL 2 ALPHA TRANSCRIPTION FACTOR JRNL REF J.MED.CHEM. V. 56 1739 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23363003 JRNL DOI 10.1021/JM301847Z REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6740 - 3.5770 0.98 2640 135 0.1775 0.1972 REMARK 3 2 3.5770 - 2.8398 1.00 2614 156 0.1624 0.1781 REMARK 3 3 2.8398 - 2.4810 1.00 2637 143 0.1713 0.2073 REMARK 3 4 2.4810 - 2.2543 1.00 2630 125 0.1622 0.1959 REMARK 3 5 2.2543 - 2.0927 1.00 2600 142 0.1657 0.1921 REMARK 3 6 2.0927 - 1.9694 1.00 2607 122 0.1637 0.1956 REMARK 3 7 1.9694 - 1.8708 0.99 2615 151 0.1810 0.2370 REMARK 3 8 1.8708 - 1.7893 0.99 2594 135 0.2097 0.2483 REMARK 3 9 1.7893 - 1.7205 0.97 2499 170 0.2350 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 55.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91110 REMARK 3 B22 (A**2) : -3.07530 REMARK 3 B33 (A**2) : 0.16430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2012 REMARK 3 ANGLE : 1.196 2724 REMARK 3 CHIRALITY : 0.076 281 REMARK 3 PLANARITY : 0.005 349 REMARK 3 DIHEDRAL : 17.282 761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:248) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2428 -52.4154 8.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.3178 REMARK 3 T33: 0.2880 T12: -0.0289 REMARK 3 T13: 0.0069 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 5.7363 L22: 7.1131 REMARK 3 L33: 7.6760 L12: -2.4619 REMARK 3 L13: -4.0924 L23: 3.6678 REMARK 3 S TENSOR REMARK 3 S11: -0.2936 S12: 0.4723 S13: -0.6645 REMARK 3 S21: -0.0629 S22: 0.1202 S23: -0.2991 REMARK 3 S31: 0.6904 S32: 0.4032 S33: 0.1303 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:258) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8207 -42.0696 17.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1426 REMARK 3 T33: 0.2162 T12: -0.0577 REMARK 3 T13: -0.0142 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 4.3064 L22: 3.9142 REMARK 3 L33: 7.2786 L12: -3.9194 REMARK 3 L13: -1.7995 L23: 0.8097 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: 0.0863 S13: -0.0479 REMARK 3 S21: 0.5573 S22: -0.2538 S23: 0.1546 REMARK 3 S31: -0.3565 S32: -0.1431 S33: 0.0996 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 259:265) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1604 -49.7799 11.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2919 REMARK 3 T33: 0.5210 T12: 0.0004 REMARK 3 T13: -0.0827 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 7.8708 L22: 7.1712 REMARK 3 L33: 9.0545 L12: 5.7300 REMARK 3 L13: -3.4357 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.0597 S13: -1.4784 REMARK 3 S21: 0.3103 S22: -0.1315 S23: -1.5538 REMARK 3 S31: 0.6897 S32: 0.2023 S33: 0.2424 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 266:282) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2152 -38.8023 14.6128 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1740 REMARK 3 T33: 0.2942 T12: -0.0588 REMARK 3 T13: -0.1031 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6352 L22: 6.4980 REMARK 3 L33: 4.9527 L12: 0.2876 REMARK 3 L13: -2.5802 L23: -0.9613 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.1712 S13: -0.1039 REMARK 3 S21: 0.3967 S22: -0.0600 S23: -0.6780 REMARK 3 S31: 0.0133 S32: 0.2035 S33: 0.1194 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 283:299) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0468 -35.9389 6.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.1983 REMARK 3 T33: 0.2951 T12: 0.0280 REMARK 3 T13: -0.0835 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 8.3140 L22: 8.0992 REMARK 3 L33: 8.1373 L12: 6.5347 REMARK 3 L13: -6.1514 L23: -5.1032 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.4411 S13: 1.0861 REMARK 3 S21: 0.0764 S22: 0.3002 S23: 0.7905 REMARK 3 S31: -0.5090 S32: -0.6205 S33: -0.2029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 300:326) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3238 -42.3592 5.4721 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1771 REMARK 3 T33: 0.1668 T12: -0.0364 REMARK 3 T13: -0.0132 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.1994 L22: 3.9517 REMARK 3 L33: 4.3674 L12: -0.0418 REMARK 3 L13: -2.5160 L23: -0.8204 REMARK 3 S TENSOR REMARK 3 S11: -0.1540 S12: 0.2194 S13: -0.0496 REMARK 3 S21: -0.2053 S22: -0.0399 S23: -0.3980 REMARK 3 S31: -0.1346 S32: 0.1582 S33: 0.1310 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 327:348) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2787 -46.5431 10.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1012 REMARK 3 T33: 0.1380 T12: -0.0217 REMARK 3 T13: -0.0277 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 5.4546 L22: 6.5616 REMARK 3 L33: 7.1211 L12: 0.7224 REMARK 3 L13: -1.3106 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.0667 S13: 0.0134 REMARK 3 S21: -0.1623 S22: -0.0866 S23: -0.1107 REMARK 3 S31: -0.1213 S32: 0.2051 S33: 0.1213 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 360:377) REMARK 3 ORIGIN FOR THE GROUP (A): 12.023 -59.607 19.556 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.1592 REMARK 3 T33: 0.0991 T12: -0.0015 REMARK 3 T13: 0.0164 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 5.9565 L22: 6.6919 REMARK 3 L33: 3.2721 L12: -0.8423 REMARK 3 L13: 1.7007 L23: -1.4091 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: 0.0790 S13: 0.0220 REMARK 3 S21: 0.3999 S22: 0.1600 S23: 0.0104 REMARK 3 S31: -0.2692 S32: -0.1908 S33: -0.1035 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 378:384) REMARK 3 ORIGIN FOR THE GROUP (A): 15.599 -55.150 28.713 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.2184 REMARK 3 T33: 0.1574 T12: 0.0640 REMARK 3 T13: -0.0309 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.7882 L22: 9.0622 REMARK 3 L33: 6.5656 L12: -0.5358 REMARK 3 L13: 2.0962 L23: -0.6283 REMARK 3 S TENSOR REMARK 3 S11: 0.1618 S12: 0.1826 S13: 0.1125 REMARK 3 S21: -0.3416 S22: -0.1424 S23: 0.5249 REMARK 3 S31: -0.2991 S32: -0.6876 S33: -0.0377 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 385:395) REMARK 3 ORIGIN FOR THE GROUP (A): 17.186 -64.699 25.931 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.3072 REMARK 3 T33: 0.1829 T12: -0.0657 REMARK 3 T13: -0.0035 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 4.3781 L22: 8.3962 REMARK 3 L33: 7.9513 L12: -2.3248 REMARK 3 L13: 3.0683 L23: -5.2665 REMARK 3 S TENSOR REMARK 3 S11: 0.3818 S12: -0.3274 S13: -0.0646 REMARK 3 S21: -0.4434 S22: 0.1737 S23: 0.5148 REMARK 3 S31: 0.7922 S32: -1.0836 S33: -0.4695 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 396:417) REMARK 3 ORIGIN FOR THE GROUP (A): 1.131 -67.072 21.038 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.1035 REMARK 3 T33: 0.1234 T12: -0.0294 REMARK 3 T13: -0.0137 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.8874 L22: 3.0975 REMARK 3 L33: 4.9298 L12: 0.7620 REMARK 3 L13: 3.0952 L23: 3.3605 REMARK 3 S TENSOR REMARK 3 S11: 0.2577 S12: -0.1541 S13: -0.3492 REMARK 3 S21: 0.2232 S22: -0.0353 S23: -0.0387 REMARK 3 S31: 0.4447 S32: -0.0293 S33: -0.1931 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 418:422) REMARK 3 ORIGIN FOR THE GROUP (A): -1.429 -55.295 9.218 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.3747 REMARK 3 T33: 0.1932 T12: 0.0532 REMARK 3 T13: -0.0039 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 2.9592 L22: 8.0831 REMARK 3 L33: 2.3925 L12: -1.9647 REMARK 3 L13: 0.9082 L23: -4.3951 REMARK 3 S TENSOR REMARK 3 S11: -0.5412 S12: -0.9604 S13: 0.4414 REMARK 3 S21: 1.0808 S22: -0.4334 S23: -0.2247 REMARK 3 S31: -0.5076 S32: -0.3757 S33: 0.8737 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 423:446) REMARK 3 ORIGIN FOR THE GROUP (A): 4.521 -60.402 26.893 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.0960 REMARK 3 T33: 0.0981 T12: 0.0256 REMARK 3 T13: -0.0032 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.4056 L22: 1.7878 REMARK 3 L33: 5.6460 L12: -0.4946 REMARK 3 L13: -2.4540 L23: 0.6334 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.1142 S13: -0.0711 REMARK 3 S21: 0.0319 S22: 0.1213 S23: 0.0132 REMARK 3 S31: -0.1588 S32: -0.0095 S33: -0.1507 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 447:455) REMARK 3 ORIGIN FOR THE GROUP (A): 11.120 -58.842 1.055 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.2315 REMARK 3 T33: 0.0644 T12: 0.0530 REMARK 3 T13: 0.0541 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.1211 L22: 0.8184 REMARK 3 L33: 6.1141 L12: 0.8646 REMARK 3 L13: 0.9470 L23: 1.6284 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.2785 S13: 0.1591 REMARK 3 S21: -1.3566 S22: 0.0517 S23: 0.0677 REMARK 3 S31: 0.0225 S32: 0.4079 S33: -0.0485 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 456:468) REMARK 3 ORIGIN FOR THE GROUP (A): 3.716 -55.279 24.615 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.1489 REMARK 3 T33: 0.0870 T12: 0.0061 REMARK 3 T13: -0.0168 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.3177 L22: 5.0767 REMARK 3 L33: 3.2653 L12: 2.2835 REMARK 3 L13: -3.4377 L23: -3.4380 REMARK 3 S TENSOR REMARK 3 S11: 0.1369 S12: -0.0439 S13: -0.0493 REMARK 3 S21: 0.1495 S22: -0.1808 S23: -0.1767 REMARK 3 S31: -0.5039 S32: 0.3456 S33: -0.0283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9717767 REMARK 200 MONOCHROMATOR : CUSTOM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3F1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 50 MM BISTRIS, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.37250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.52700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.37250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.52700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 580 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 ASN A 328 REMARK 465 PRO A 329 REMARK 465 ARG A 330 REMARK 465 ASN A 331 REMARK 465 LEU A 332 REMARK 465 GLN A 333 REMARK 465 LYS A 349 REMARK 465 ASN A 350 REMARK 465 GLY B 350 REMARK 465 GLU B 351 REMARK 465 PHE B 352 REMARK 465 LYS B 353 REMARK 465 GLY B 354 REMARK 465 LEU B 355 REMARK 465 ASN B 356 REMARK 465 VAL B 357 REMARK 465 CYS B 358 REMARK 465 GLN B 359 REMARK 465 GLN B 469 REMARK 465 GLU B 470 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1 CE NZ REMARK 480 LYS A 299 CE NZ REMARK 480 GLN A 301 CD OE1 NE2 REMARK 480 GLN A 335 CD OE1 NE2 REMARK 480 GLU A 346 CG CD OE1 OE2 REMARK 480 ILE A 347 CG1 CD1 REMARK 480 GLN B 389 CD REMARK 480 LYS B 419 NZ REMARK 480 ASN B 433 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 335 O HOH A 536 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 253 OE2 GLU B 370 4556 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 252 -0.36 83.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 568 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 569 DISTANCE = 6.60 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE SMALL MOLECULE LIGAND BOUND TO THE HIF2ALPHA PAS-B DOMAIN IN REMARK 600 THIS ENTRY IS IDENTICAL TO COMPOUND (23), WHICH DESCRIBED IN THE REMARK 600 PRIMARY PUBLICATION ASSOCIATED WITH THIS ENTRY REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 576 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0XB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE8 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GHI RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF LIGAND JN-128-022 WITH AN ENHANCED AFFINITY HIF2 REMARK 900 PAS-B HETERODIMER REMARK 900 RELATED ID: 3H7W RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF LIGAND THS-017 WITH AN ENHANCED AFFINITY HIF2 REMARK 900 PAS-B HETERODIMER REMARK 900 RELATED ID: 3H82 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF LIGAND THS-020 WITH AN ENHANCED AFFINITY HIF2 REMARK 900 PAS-B HETERODIMER REMARK 900 RELATED ID: 3F1O RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF LIGAND THS-044 WITH AN ENHANCED AFFINITY HIF2 REMARK 900 PAS-B HETERODIMER REMARK 900 RELATED ID: 3F1N RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF CRYOSOLVENT WITH AN ENHANCED AFFINITY HIF2 PAS-B REMARK 900 HETERODIMER REMARK 900 RELATED ID: 3F1P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENHANCED AFFINITY HIF2 PAS-B HETERODIMER, REMARK 900 UNLIGANDED. REMARK 900 RELATED ID: 2A24 RELATED DB: PDB REMARK 900 NMR-GUIDED MODEL OF THE WT HIF2 PAS-B HETERODIMER REMARK 900 RELATED ID: 1P97 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HIF2ALPHA PAS-B DOMAIN. REMARK 900 RELATED ID: 1X0O RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE ARNT PAS-B DOMAIN. REMARK 900 RELATED ID: 2B02 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ARNT PAS-B DOMAIN DBREF 4GS9 A 239 350 UNP Q99814 EPAS1_HUMAN 239 350 DBREF 4GS9 B 356 470 UNP P27540 ARNT_HUMAN 356 470 SEQADV 4GS9 GLY A -2 UNP Q99814 EXPRESSION TAG SEQADV 4GS9 GLU A -1 UNP Q99814 EXPRESSION TAG SEQADV 4GS9 PHE A 0 UNP Q99814 EXPRESSION TAG SEQADV 4GS9 LYS A 1 UNP Q99814 EXPRESSION TAG SEQADV 4GS9 GLY A 2 UNP Q99814 EXPRESSION TAG SEQADV 4GS9 GLU A 247 UNP Q99814 ARG 247 ENGINEERED MUTATION SEQADV 4GS9 GLY B 350 UNP P27540 EXPRESSION TAG SEQADV 4GS9 GLU B 351 UNP P27540 EXPRESSION TAG SEQADV 4GS9 PHE B 352 UNP P27540 EXPRESSION TAG SEQADV 4GS9 LYS B 353 UNP P27540 EXPRESSION TAG SEQADV 4GS9 GLY B 354 UNP P27540 EXPRESSION TAG SEQADV 4GS9 LEU B 355 UNP P27540 EXPRESSION TAG SEQADV 4GS9 ARG B 362 UNP P27540 GLU 362 ENGINEERED MUTATION SEQRES 1 A 117 GLY GLU PHE LYS GLY LEU ASP SER LYS THR PHE LEU SER SEQRES 2 A 117 GLU HIS SER MET ASP MET LYS PHE THR TYR CYS ASP ASP SEQRES 3 A 117 ARG ILE THR GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU SEQRES 4 A 117 LEU GLY ARG SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SEQRES 5 A 117 SER GLU ASN MET THR LYS SER HIS GLN ASN LEU CYS THR SEQRES 6 A 117 LYS GLY GLN VAL VAL SER GLY GLN TYR ARG MET LEU ALA SEQRES 7 A 117 LYS HIS GLY GLY TYR VAL TRP LEU GLU THR GLN GLY THR SEQRES 8 A 117 VAL ILE TYR ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE SEQRES 9 A 117 MET CYS VAL ASN TYR VAL LEU SER GLU ILE GLU LYS ASN SEQRES 1 B 121 GLY GLU PHE LYS GLY LEU ASN VAL CYS GLN PRO THR ARG SEQRES 2 B 121 PHE ILE SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE SEQRES 3 B 121 VAL ASP HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO SEQRES 4 B 121 GLN GLU LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS SEQRES 5 B 121 PRO GLU ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN SEQRES 6 B 121 VAL VAL LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE SEQRES 7 B 121 ARG PHE ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG SEQRES 8 B 121 THR SER SER PHE THR PHE GLN ASN PRO TYR SER ASP GLU SEQRES 9 B 121 ILE GLU TYR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SEQRES 10 B 121 SER SER GLN GLU HET 0XB A 401 26 HET PE8 A 402 59 HETNAM 0XB N-(3-FLUOROPHENYL)-4-NITRO-2,1,3-BENZOXADIAZOL-5-AMINE HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL FORMUL 3 0XB C12 H7 F N4 O3 FORMUL 4 PE8 C16 H34 O9 FORMUL 5 HOH *121(H2 O) HELIX 1 1 LEU A 239 SER A 241 5 3 HELIX 2 2 ASP A 259 GLY A 266 1 8 HELIX 3 3 HIS A 268 LEU A 273 1 6 HELIX 4 4 SER A 276 TYR A 281 5 6 HELIX 5 6 ASP A 285 GLY A 300 1 16 HELIX 6 7 ARG B 379 GLY B 385 1 7 HELIX 7 8 GLN B 387 LEU B 391 5 5 HELIX 8 9 ASN B 395 CYS B 400 5 6 HELIX 9 10 ASP B 404 VAL B 416 1 13 SHEET 1 A 5 PHE A 254 CYS A 257 0 SHEET 2 A 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 A 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 A 5 TYR A 316 ILE A 326 -1 N ILE A 326 O CYS A 336 SHEET 5 A 5 GLN A 301 VAL A 303 -1 N VAL A 302 O GLY A 323 SHEET 1 B 5 PHE A 254 CYS A 257 0 SHEET 2 B 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 B 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 B 5 TYR A 316 ILE A 326 -1 N ILE A 326 O CYS A 336 SHEET 5 B 5 TYR A 307 LEU A 310 -1 N TYR A 307 O LEU A 319 SHEET 1 C 5 PHE B 373 VAL B 376 0 SHEET 2 C 5 ARG B 362 HIS B 367 -1 N ARG B 366 O THR B 374 SHEET 3 C 5 TYR B 456 ASN B 463 -1 O CYS B 459 N SER B 365 SHEET 4 C 5 TRP B 436 PHE B 446 -1 N ARG B 440 O THR B 462 SHEET 5 C 5 LEU B 423 ARG B 430 -1 N PHE B 427 O MET B 439 SITE 1 AC1 12 SER A 246 HIS A 248 MET A 252 ALA A 277 SITE 2 AC1 12 TYR A 281 MET A 289 SER A 292 HIS A 293 SITE 3 AC1 12 TYR A 307 MET A 309 THR A 321 ASN A 341 SITE 1 AC2 9 TYR A 278 THR A 290 HIS A 293 GLN A 294 SITE 2 AC2 9 THR A 298 TYR B 386 GLU B 390 LYS B 394 SITE 3 AC2 9 GLU B 398 CRYST1 72.745 83.054 41.075 90.00 105.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013747 0.000000 0.003885 0.00000 SCALE2 0.000000 0.012040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025299 0.00000