data_4GSI # _entry.id 4GSI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GSI pdb_00004gsi 10.2210/pdb4gsi/pdb NDB NA2018 ? ? RCSB RCSB074580 ? ? WWPDB D_1000074580 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ORG . unspecified PDB 2ORF . unspecified PDB 2ORH . unspecified PDB 3TOK . unspecified PDB 4GQD . unspecified PDB 4GRE . unspecified PDB 4GS2 . unspecified PDB 4GSG . unspecified # _pdbx_database_status.entry_id 4GSI _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ho, P.S.' 1 'Carter, M.' 2 # _citation.id primary _citation.title 'Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.' _citation.journal_abbrev Biochemistry _citation.journal_volume 52 _citation.page_first 4891 _citation.page_last 4903 _citation.year 2013 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23789744 _citation.pdbx_database_id_DOI 10.1021/bi400590h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Carter, M.' 1 ? primary 'Voth, A.R.' 2 ? primary 'Scholfield, M.R.' 3 ? primary 'Rummel, B.' 4 ? primary 'Sowers, L.C.' 5 ? primary 'Ho, P.S.' 6 ? # _cell.length_a 65.213 _cell.length_b 23.917 _cell.length_c 77.450 _cell.angle_alpha 90.000 _cell.angle_beta 114.800 _cell.angle_gamma 90.000 _cell.entry_id 4GSI _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4GSI _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UFP)P*CP*GP*G)-3') ; 3064.968 4 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3') ; 3029.994 4 ? ? ? ? 3 water nat water 18.015 100 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(DG)(DG)(DT)(DA)(UFP)(DC)(DG)(DG)' CCGGTANCGG A,C,F,H ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DT)(DA)(DC)(DC)(DG)(DG)' CCGATACCGG B,D,E,G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 UFP n 1 8 DC n 1 9 DG n 1 10 DG n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DT n 2 6 DA n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'synthetically engineered DNA sequence' 2 1 sample ? ? ? ? ? 'synthetically engineered DNA sequence' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4GSI 4GSI 1 ? CCGGTANCGG ? 2 PDB 4GSI 4GSI 2 ? CCGATACCGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GSI A 1 ? 10 ? 4GSI 1 ? 10 ? 1 10 2 1 4GSI C 1 ? 10 ? 4GSI 21 ? 30 ? 21 30 3 1 4GSI F 1 ? 10 ? 4GSI 211 ? 220 ? 211 220 4 1 4GSI H 1 ? 10 ? 4GSI 231 ? 240 ? 231 240 5 2 4GSI B 1 ? 10 ? 4GSI 11 ? 20 ? 11 20 6 2 4GSI D 1 ? 10 ? 4GSI 31 ? 40 ? 31 40 7 2 4GSI E 1 ? 10 ? 4GSI 201 ? 210 ? 201 210 8 2 4GSI G 1 ? 10 ? 4GSI 221 ? 230 ? 221 230 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 UFP 'DNA linking' . "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 F N2 O8 P' 326.172 # _exptl.crystals_number 1 _exptl.entry_id 4GSI _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;0.7mM DNA, 25mM sodium cacodylate pH 7.0 buffer, 10-25mM calcium chloride, and 0.8-1.2mM spermine, equilibrated against a reservoir of 30-40% aqueous MPD, hanging drop, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 133 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2011-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 # _reflns.entry_id 4GSI _reflns.d_resolution_high 2.040 _reflns.d_resolution_low 55.000 _reflns.number_obs 3910 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_netI_over_sigmaI 23.000 _reflns.pdbx_chi_squared 5.397 _reflns.pdbx_redundancy 5.500 _reflns.percent_possible_obs 24.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 6763 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.040 2.130 ? ? ? 0.207 ? ? 3.314 3.400 ? 26 3.300 1 1 2.130 2.240 ? ? ? 0.282 ? ? 4.319 4.500 ? 172 22.300 2 1 2.240 2.380 ? ? ? 0.265 ? ? 1.649 5.000 ? 395 49.900 3 1 2.380 2.560 ? ? ? 0.245 ? ? 4.698 5.200 ? 556 71.100 4 1 2.560 2.820 ? ? ? 0.202 ? ? 6.298 5.600 ? 602 75.700 5 1 2.820 3.230 ? ? ? 0.099 ? ? 4.485 5.600 ? 628 78.000 6 1 3.230 4.070 ? ? ? 0.068 ? ? 9.417 5.200 ? 691 85.800 7 1 4.070 55.000 ? ? ? 0.045 ? ? 4.656 6.200 ? 840 99.400 8 1 # _refine.entry_id 4GSI _refine.ls_d_res_high 2.3800 _refine.ls_d_res_low 32.6100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 27432.0000 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.ls_percent_reflns_obs 74.2000 _refine.ls_number_reflns_obs 3398 _refine.ls_number_reflns_all 4947 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'BULK SOLVENT MODEL USED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2250 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2910 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.3000 _refine.ls_number_reflns_R_free 180 _refine.ls_R_factor_R_free_error 0.0220 _refine.B_iso_mean 15.9929 _refine.solvent_model_param_bsol 85.8826 _refine.solvent_model_param_ksol 0.3500 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 2.4800 _refine.aniso_B[2][2] 3.5800 _refine.aniso_B[3][3] -6.0600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.8800 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2ORG _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 39.210 _refine.B_iso_min 0.110 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4GSI _refine_analyze.Luzzati_coordinate_error_obs 0.300 _refine_analyze.Luzzati_sigma_a_obs 0.320 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.390 _refine_analyze.Luzzati_sigma_a_free 0.660 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1616 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 1716 _refine_hist.d_res_high 2.3800 _refine_hist.d_res_low 32.6100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.002 ? ? ? 'X-RAY DIFFRACTION' c_angle_deg ? 0.600 ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d ? 17.700 ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d ? 1.020 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.3800 _refine_ls_shell.d_res_low 2.5300 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 51.2000 _refine_ls_shell.number_reflns_R_work 347 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3310 _refine_ls_shell.R_factor_R_free 0.3610 _refine_ls_shell.percent_reflns_R_free 8.2000 _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error 0.0650 _refine_ls_shell.number_reflns_all 378 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 mcdna-rna_rep.param mcdna-rna.top 'X-RAY DIFFRACTION' 2 ion.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 4GSI _struct.title 'DNA Holliday junction stabilized by fluorine halogen bond. F2J construct of related reference.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GSI _struct_keywords.text 'DNA Holliday junction, halogen bond, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 1 ? G N N 2 ? H N N 1 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" A ? ? 1_555 A UFP 7 P A ? A DA 6 A UFP 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale one ? A UFP 7 "O3'" A ? ? 1_555 A DC 8 P A ? A UFP 7 A DC 8 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? C DA 6 "O3'" A ? ? 1_555 C UFP 7 P A ? C DA 26 C UFP 27 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale one ? C UFP 7 "O3'" A ? ? 1_555 C DC 8 P A ? C UFP 27 C DC 28 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? F DA 6 "O3'" B ? ? 1_555 F UFP 7 P B ? F DA 216 F UFP 217 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale6 covale one ? F UFP 7 "O3'" B ? ? 1_555 F DC 8 P B ? F UFP 217 F DC 218 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale7 covale both ? H DA 6 "O3'" B ? ? 1_555 H UFP 7 P B ? H DA 236 H UFP 237 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale8 covale one ? H UFP 7 "O3'" B ? ? 1_555 H DC 8 P B ? H UFP 237 H DC 238 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A DC 1 N3 A ? ? 1_555 B DG 10 N1 A ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 A ? ? 1_555 B DG 10 O6 A ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 A ? ? 1_555 B DG 10 N2 A ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 A ? ? 1_555 B DG 9 N1 A ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 A ? ? 1_555 B DG 9 O6 A ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 A ? ? 1_555 B DG 9 N2 A ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 A ? ? 1_555 B DC 8 N3 A ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 A ? ? 1_555 B DC 8 O2 A ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 A ? ? 1_555 B DC 8 N4 A ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 A ? ? 1_555 B DC 7 N3 A ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog11 hydrog ? ? A DT 5 N3 A ? ? 1_555 B DA 6 N1 A ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 A ? ? 1_555 B DA 6 N6 A ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A UFP 7 N3 A ? ? 1_555 D DA 4 N1 A ? A UFP 7 D DA 34 1_555 ? ? ? ? ? ? 'UFP-DA PAIR' ? ? ? hydrog14 hydrog ? ? A DC 8 N3 A ? ? 1_555 D DG 3 N1 A ? A DC 8 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 A ? ? 1_555 D DG 3 O6 A ? A DC 8 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 A ? ? 1_555 D DG 3 N2 A ? A DC 8 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N1 A ? ? 1_555 D DC 2 N3 A ? A DG 9 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 N2 A ? ? 1_555 D DC 2 O2 A ? A DG 9 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 O6 A ? ? 1_555 D DC 2 N4 A ? A DG 9 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 A ? ? 1_555 D DC 1 N4 A ? A DG 10 D DC 31 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog21 hydrog ? ? B DC 1 N4 A ? ? 1_555 C DG 10 O6 A ? B DC 11 C DG 30 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog22 hydrog ? ? B DC 2 N4 A ? ? 1_555 C DC 8 N3 A ? B DC 12 C DC 28 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog23 hydrog ? ? B DC 2 N3 A ? ? 1_555 C DG 9 N1 A ? B DC 12 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 2 N4 A ? ? 1_555 C DG 9 O6 A ? B DC 12 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 2 O2 A ? ? 1_555 C DG 9 N2 A ? B DC 12 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 3 N1 A ? ? 1_555 C DC 8 N3 A ? B DG 13 C DC 28 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog27 hydrog ? ? B DA 4 N1 A ? ? 1_555 C UFP 7 N3 A ? B DA 14 C UFP 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 4 N6 A ? ? 1_555 C UFP 7 O4 A ? B DA 14 C UFP 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 1 N4 A ? ? 1_555 D DG 10 O6 A ? C DC 21 D DG 40 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog30 hydrog ? ? C DC 2 O2 A ? ? 1_555 D DG 9 N2 A ? C DC 22 D DG 39 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog31 hydrog ? ? C DG 3 N1 A ? ? 1_555 D DC 8 O2 A ? C DG 23 D DC 38 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? C DG 4 N1 A ? ? 1_555 D DC 7 N3 A ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 4 N2 A ? ? 1_555 D DC 7 O2 A ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 4 O6 A ? ? 1_555 D DC 7 N4 A ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 5 N3 A ? ? 1_555 D DA 6 N1 A ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 5 O4 A ? ? 1_555 D DA 6 N6 A ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 6 N1 A ? ? 1_555 D DT 5 N3 A ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 6 N6 A ? ? 1_555 D DT 5 O4 A ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 4GSI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4GSI _atom_sites.fract_transf_matrix[1][1] 0.015334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007086 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014223 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 UFP 7 7 7 UFP UFP A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 2 1 DC 1 11 11 DC DC B . n B 2 2 DC 2 12 12 DC DC B . n B 2 3 DG 3 13 13 DG DG B . n B 2 4 DA 4 14 14 DA DA B . n B 2 5 DT 5 15 15 DT DT B . n B 2 6 DA 6 16 16 DA DA B . n B 2 7 DC 7 17 17 DC DC B . n B 2 8 DC 8 18 18 DC DC B . n B 2 9 DG 9 19 19 DG DG B . n B 2 10 DG 10 20 20 DG DG B . n C 1 1 DC 1 21 21 DC DC C . n C 1 2 DC 2 22 22 DC DC C . n C 1 3 DG 3 23 23 DG DG C . n C 1 4 DG 4 24 24 DG DG C . n C 1 5 DT 5 25 25 DT DT C . n C 1 6 DA 6 26 26 DA DA C . n C 1 7 UFP 7 27 27 UFP UFP C . n C 1 8 DC 8 28 28 DC DC C . n C 1 9 DG 9 29 29 DG DG C . n C 1 10 DG 10 30 30 DG DG C . n D 2 1 DC 1 31 31 DC DC D . n D 2 2 DC 2 32 32 DC DC D . n D 2 3 DG 3 33 33 DG DG D . n D 2 4 DA 4 34 34 DA DA D . n D 2 5 DT 5 35 35 DT DT D . n D 2 6 DA 6 36 36 DA DA D . n D 2 7 DC 7 37 37 DC DC D . n D 2 8 DC 8 38 38 DC DC D . n D 2 9 DG 9 39 39 DG DG D . n D 2 10 DG 10 40 40 DG DG D . n E 2 1 DC 1 201 201 DC DC E . n E 2 2 DC 2 202 202 DC DC E . n E 2 3 DG 3 203 203 DG DG E . n E 2 4 DA 4 204 204 DA DA E . n E 2 5 DT 5 205 205 DT DT E . n E 2 6 DA 6 206 206 DA DA E . n E 2 7 DC 7 207 207 DC DC E . n E 2 8 DC 8 208 208 DC DC E . n E 2 9 DG 9 209 209 DG DG E . n E 2 10 DG 10 210 210 DG DG E . n F 1 1 DC 1 211 211 DC DC F . n F 1 2 DC 2 212 212 DC DC F . n F 1 3 DG 3 213 213 DG DG F . n F 1 4 DG 4 214 214 DG DG F . n F 1 5 DT 5 215 215 DT DT F . n F 1 6 DA 6 216 216 DA DA F . n F 1 7 UFP 7 217 217 UFP UFP F . n F 1 8 DC 8 218 218 DC DC F . n F 1 9 DG 9 219 219 DG DG F . n F 1 10 DG 10 220 220 DG DG F . n G 2 1 DC 1 221 221 DC DC G . n G 2 2 DC 2 222 222 DC DC G . n G 2 3 DG 3 223 223 DG DG G . n G 2 4 DA 4 224 224 DA DA G . n G 2 5 DT 5 225 225 DT DT G . n G 2 6 DA 6 226 226 DA DA G . n G 2 7 DC 7 227 227 DC DC G . n G 2 8 DC 8 228 228 DC DC G . n G 2 9 DG 9 229 229 DG DG G . n G 2 10 DG 10 230 230 DG DG G . n H 1 1 DC 1 231 231 DC DC H . n H 1 2 DC 2 232 232 DC DC H . n H 1 3 DG 3 233 233 DG DG H . n H 1 4 DG 4 234 234 DG DG H . n H 1 5 DT 5 235 235 DT DT H . n H 1 6 DA 6 236 236 DA DA H . n H 1 7 UFP 7 237 237 UFP UFP H . n H 1 8 DC 8 238 238 DC DC H . n H 1 9 DG 9 239 239 DG DG H . n H 1 10 DG 10 240 240 DG DG H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HOH 1 101 42 HOH HOH A . I 3 HOH 2 102 50 HOH HOH A . I 3 HOH 3 103 56 HOH HOH A . I 3 HOH 4 104 128 HOH HOH A . I 3 HOH 5 105 147 HOH HOH A . I 3 HOH 6 106 154 HOH HOH A . I 3 HOH 7 107 101 HOH HOH A . I 3 HOH 8 108 105 HOH HOH A . J 3 HOH 1 101 71 HOH HOH B . J 3 HOH 2 102 96 HOH HOH B . J 3 HOH 3 103 111 HOH HOH B . J 3 HOH 4 104 112 HOH HOH B . J 3 HOH 5 105 114 HOH HOH B . J 3 HOH 6 106 117 HOH HOH B . J 3 HOH 7 107 122 HOH HOH B . J 3 HOH 8 108 125 HOH HOH B . J 3 HOH 9 109 139 HOH HOH B . J 3 HOH 10 110 162 HOH HOH B . K 3 HOH 1 101 63 HOH HOH C . K 3 HOH 2 102 67 HOH HOH C . K 3 HOH 3 103 87 HOH HOH C . K 3 HOH 4 104 118 HOH HOH C . K 3 HOH 5 105 120 HOH HOH C . K 3 HOH 6 106 133 HOH HOH C . K 3 HOH 7 107 136 HOH HOH C . K 3 HOH 8 108 138 HOH HOH C . K 3 HOH 9 109 140 HOH HOH C . K 3 HOH 10 110 153 HOH HOH C . L 3 HOH 1 101 44 HOH HOH D . L 3 HOH 2 102 64 HOH HOH D . L 3 HOH 3 103 91 HOH HOH D . L 3 HOH 4 104 106 HOH HOH D . L 3 HOH 5 105 164 HOH HOH D . L 3 HOH 6 106 76 HOH HOH D . L 3 HOH 7 107 81 HOH HOH D . L 3 HOH 8 108 88 HOH HOH D . M 3 HOH 1 301 59 HOH HOH E . M 3 HOH 2 302 149 HOH HOH E . M 3 HOH 3 303 41 HOH HOH E . M 3 HOH 4 304 53 HOH HOH E . M 3 HOH 5 305 55 HOH HOH E . M 3 HOH 6 306 69 HOH HOH E . M 3 HOH 7 307 73 HOH HOH E . M 3 HOH 8 308 90 HOH HOH E . M 3 HOH 9 309 92 HOH HOH E . M 3 HOH 10 310 99 HOH HOH E . M 3 HOH 11 311 100 HOH HOH E . M 3 HOH 12 312 124 HOH HOH E . M 3 HOH 13 313 137 HOH HOH E . M 3 HOH 14 314 144 HOH HOH E . M 3 HOH 15 315 148 HOH HOH E . M 3 HOH 16 316 156 HOH HOH E . M 3 HOH 17 317 161 HOH HOH E . N 3 HOH 1 301 52 HOH HOH F . N 3 HOH 2 302 58 HOH HOH F . N 3 HOH 3 303 62 HOH HOH F . N 3 HOH 4 304 75 HOH HOH F . N 3 HOH 5 305 82 HOH HOH F . N 3 HOH 6 306 95 HOH HOH F . N 3 HOH 7 307 97 HOH HOH F . N 3 HOH 8 308 104 HOH HOH F . N 3 HOH 9 309 107 HOH HOH F . N 3 HOH 10 310 115 HOH HOH F . N 3 HOH 11 311 116 HOH HOH F . N 3 HOH 12 312 119 HOH HOH F . N 3 HOH 13 313 126 HOH HOH F . N 3 HOH 14 314 129 HOH HOH F . N 3 HOH 15 315 132 HOH HOH F . N 3 HOH 16 316 142 HOH HOH F . N 3 HOH 17 317 143 HOH HOH F . N 3 HOH 18 318 145 HOH HOH F . N 3 HOH 19 319 150 HOH HOH F . N 3 HOH 20 320 152 HOH HOH F . N 3 HOH 21 321 158 HOH HOH F . N 3 HOH 22 322 159 HOH HOH F . O 3 HOH 1 301 77 HOH HOH G . O 3 HOH 2 302 127 HOH HOH G . O 3 HOH 3 303 135 HOH HOH G . O 3 HOH 4 304 45 HOH HOH G . O 3 HOH 5 305 46 HOH HOH G . O 3 HOH 6 306 48 HOH HOH G . O 3 HOH 7 307 49 HOH HOH G . O 3 HOH 8 308 57 HOH HOH G . O 3 HOH 9 309 60 HOH HOH G . O 3 HOH 10 310 68 HOH HOH G . O 3 HOH 11 311 109 HOH HOH G . O 3 HOH 12 312 123 HOH HOH G . O 3 HOH 13 313 130 HOH HOH G . O 3 HOH 14 314 141 HOH HOH G . O 3 HOH 15 315 146 HOH HOH G . O 3 HOH 16 316 151 HOH HOH G . O 3 HOH 17 317 155 HOH HOH G . P 3 HOH 1 301 86 HOH HOH H . P 3 HOH 2 302 103 HOH HOH H . P 3 HOH 3 303 113 HOH HOH H . P 3 HOH 4 304 121 HOH HOH H . P 3 HOH 5 305 131 HOH HOH H . P 3 HOH 6 306 134 HOH HOH H . P 3 HOH 7 307 157 HOH HOH H . P 3 HOH 8 308 160 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 E HOH 311 ? M HOH . 2 1 H HOH 302 ? P HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2013-12-18 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 15 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS 1.2 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 CNS . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O E HOH 306 ? ? O E HOH 309 ? ? 1.92 2 1 O B HOH 103 ? ? O G HOH 317 ? ? 2.01 3 1 OP1 F DG 219 ? B O F HOH 320 ? ? 2.10 4 1 OP1 B DG 19 ? A O F HOH 320 ? ? 2.10 5 1 OP2 E DG 210 ? B O E HOH 308 ? ? 2.12 6 1 OP2 A DG 10 ? A O E HOH 308 ? ? 2.12 7 1 OP2 D DC 37 ? A O D HOH 102 ? ? 2.14 8 1 O B HOH 107 ? ? O F HOH 318 ? ? 2.15 9 1 "O4'" F DG 213 ? B O F HOH 302 ? ? 2.17 10 1 OP2 F DG 220 ? B O F HOH 301 ? ? 2.18 11 1 "O4'" B DG 13 ? A O F HOH 302 ? ? 2.18 12 1 O G HOH 316 ? ? O G HOH 317 ? ? 2.19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 UFP N1 N N N 147 UFP C2 C N N 148 UFP N3 N N N 149 UFP C4 C N N 150 UFP C5 C N N 151 UFP C6 C N N 152 UFP O2 O N N 153 UFP O4 O N N 154 UFP F5 F N N 155 UFP "C1'" C N R 156 UFP "C2'" C N N 157 UFP "C3'" C N S 158 UFP "C4'" C N R 159 UFP "O3'" O N N 160 UFP "O4'" O N N 161 UFP "C5'" C N N 162 UFP "O5'" O N N 163 UFP P P N N 164 UFP O1P O N N 165 UFP O2P O N N 166 UFP O3P O N N 167 UFP HN3 H N N 168 UFP H6 H N N 169 UFP "H1'" H N N 170 UFP "H2'1" H N N 171 UFP "H2'2" H N N 172 UFP "H3'" H N N 173 UFP "H4'" H N N 174 UFP "HO3'" H N N 175 UFP "H5'1" H N N 176 UFP "H5'2" H N N 177 UFP HOP2 H N N 178 UFP HOP3 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 UFP N1 C2 sing N N 152 UFP N1 C6 sing N N 153 UFP N1 "C1'" sing N N 154 UFP C2 N3 sing N N 155 UFP C2 O2 doub N N 156 UFP N3 C4 sing N N 157 UFP N3 HN3 sing N N 158 UFP C4 C5 sing N N 159 UFP C4 O4 doub N N 160 UFP C5 C6 doub N N 161 UFP C5 F5 sing N N 162 UFP C6 H6 sing N N 163 UFP "C1'" "C2'" sing N N 164 UFP "C1'" "O4'" sing N N 165 UFP "C1'" "H1'" sing N N 166 UFP "C2'" "C3'" sing N N 167 UFP "C2'" "H2'1" sing N N 168 UFP "C2'" "H2'2" sing N N 169 UFP "C3'" "C4'" sing N N 170 UFP "C3'" "O3'" sing N N 171 UFP "C3'" "H3'" sing N N 172 UFP "C4'" "O4'" sing N N 173 UFP "C4'" "C5'" sing N N 174 UFP "C4'" "H4'" sing N N 175 UFP "O3'" "HO3'" sing N N 176 UFP "C5'" "O5'" sing N N 177 UFP "C5'" "H5'1" sing N N 178 UFP "C5'" "H5'2" sing N N 179 UFP "O5'" P sing N N 180 UFP P O1P doub N N 181 UFP P O2P sing N N 182 UFP P O3P sing N N 183 UFP O2P HOP2 sing N N 184 UFP O3P HOP3 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GSI 'double helix' 4GSI 'b-form double helix' 4GSI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 -0.386 -0.680 -0.487 15.727 -34.957 -0.272 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.368 -0.438 1.351 -28.022 -4.065 -2.744 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -1.125 -0.227 -0.330 -11.257 -9.201 4.155 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 1.084 0.702 -0.589 -19.736 -34.179 9.708 4 A_DG4:DC17_B A 4 ? B 17 ? ? ? 1 A DT 5 1_555 B DA 6 1_555 0.707 0.233 0.817 -21.644 -2.002 -4.847 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 C UFP 7 1_555 B DA 4 1_555 0.190 -0.238 -0.750 0.234 -27.934 0.203 6 C_UFP27:DA14_B C 27 ? B 14 ? 20 1 1 C DC 8 1_555 B DG 3 1_555 0.600 0.258 1.222 -7.239 3.090 9.066 7 C_DC28:DG13_B C 28 ? B 13 ? ? 1 1 C DG 9 1_555 B DC 2 1_555 -0.228 -0.228 1.586 1.712 -4.439 4.765 8 C_DG29:DC12_B C 29 ? B 12 ? 19 1 1 C DG 10 1_555 B DC 1 1_555 -0.677 -0.059 -0.530 -7.236 -32.284 -5.340 9 C_DG30:DC11_B C 30 ? B 11 ? ? 1 1 C DC 1 1_555 D DG 10 1_555 0.336 -0.351 -0.679 8.014 -23.975 -11.440 10 C_DC21:DG40_D C 21 ? D 40 ? ? 1 1 C DC 2 1_555 D DG 9 1_555 -0.343 0.799 0.868 -1.196 -14.350 22.465 11 C_DC22:DG39_D C 22 ? D 39 ? ? 1 1 C DG 3 1_555 D DC 8 1_555 -1.872 -0.395 0.205 -10.409 10.335 8.481 12 C_DG23:DC38_D C 23 ? D 38 ? ? 1 1 C DG 4 1_555 D DC 7 1_555 -0.772 -0.352 0.594 0.140 -10.585 -11.956 13 C_DG24:DC37_D C 24 ? D 37 ? 19 1 1 C DT 5 1_555 D DA 6 1_555 -0.399 0.000 0.573 -12.457 -13.012 -2.521 14 C_DT25:DA36_D C 25 ? D 36 ? 20 1 1 C DA 6 1_555 D DT 5 1_555 -0.937 0.159 -0.224 -14.315 -9.909 2.137 15 C_DA26:DT35_D C 26 ? D 35 ? 20 1 1 A UFP 7 1_555 D DA 4 1_555 0.521 0.165 0.329 -3.012 -28.787 1.572 16 A_UFP7:DA34_D A 7 ? D 34 ? ? ? 1 A DC 8 1_555 D DG 3 1_555 -0.103 -0.490 0.405 -16.989 6.105 1.565 17 A_DC8:DG33_D A 8 ? D 33 ? 19 1 1 A DG 9 1_555 D DC 2 1_555 -0.193 -0.442 0.689 5.544 0.419 -1.841 18 A_DG9:DC32_D A 9 ? D 32 ? 19 1 1 A DG 10 1_555 D DC 1 1_555 -1.044 0.317 0.431 4.085 -19.660 -17.644 19 A_DG10:DC31_D A 10 ? D 31 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.126 2.084 4.991 -9.169 0.128 50.508 2.395 -1.108 4.905 0.149 10.645 51.280 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.359 1.976 2.902 3.970 -4.115 36.000 3.644 1.041 2.615 -6.607 -6.375 36.437 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.819 1.900 3.720 -1.855 -0.040 46.548 2.406 0.858 3.747 -0.050 2.346 46.583 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.460 -0.664 2.943 -13.787 10.190 29.938 -2.560 -1.166 2.559 17.989 24.341 34.402 4 AA_DG4DT5:DA16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 C UFP 7 1_555 B DA 4 1_555 -0.149 0.926 6.183 2.565 -4.663 67.591 1.165 0.317 6.107 -4.185 -2.302 67.775 5 AC_DT5UFP27:DA14DA16_BB A 5 ? B 16 ? C 27 ? B 14 ? 1 C UFP 7 1_555 B DA 4 1_555 C DC 8 1_555 B DG 3 1_555 0.767 2.012 3.974 -9.311 0.341 45.639 2.513 -1.908 3.771 0.435 11.858 46.530 6 CC_UFP27DC28:DG13DA14_BB C 27 ? B 14 ? C 28 ? B 13 ? 1 C DC 8 1_555 B DG 3 1_555 C DG 9 1_555 B DC 2 1_555 -0.604 2.729 3.332 -2.740 -9.933 34.934 5.637 0.618 2.526 -16.118 4.446 36.377 7 CC_DC28DG29:DC12DG13_BB C 28 ? B 13 ? C 29 ? B 12 ? 1 C DG 9 1_555 B DC 2 1_555 C DG 10 1_555 B DC 1 1_555 -0.830 2.006 3.779 7.742 6.700 38.969 2.016 2.245 3.832 9.838 -11.368 40.241 8 CC_DG29DG30:DC11DC12_BB C 29 ? B 12 ? C 30 ? B 11 ? 1 C DC 1 1_555 D DG 10 1_555 C DC 2 1_555 D DG 9 1_555 2.450 1.844 3.724 3.910 7.820 38.658 1.595 -3.054 4.222 11.632 -5.816 39.597 9 CC_DC21DC22:DG39DG40_DD C 21 ? D 40 ? C 22 ? D 39 ? 1 C DC 2 1_555 D DG 9 1_555 C DG 3 1_555 D DC 8 1_555 -0.614 2.755 3.614 -1.991 0.179 32.171 4.926 0.712 3.659 0.322 3.588 32.231 10 CC_DC22DG23:DC38DG39_DD C 22 ? D 39 ? C 23 ? D 38 ? 1 C DG 3 1_555 D DC 8 1_555 C DG 4 1_555 D DC 7 1_555 -2.045 0.961 3.580 -8.387 -2.919 42.067 1.643 1.841 3.829 -4.013 11.530 42.952 11 CC_DG23DG24:DC37DC38_DD C 23 ? D 38 ? C 24 ? D 37 ? 1 C DG 4 1_555 D DC 7 1_555 C DT 5 1_555 D DA 6 1_555 0.889 -0.922 3.406 3.191 5.347 34.590 -2.353 -0.980 3.297 8.903 -5.313 35.129 12 CC_DG24DT25:DA36DC37_DD C 24 ? D 37 ? C 25 ? D 36 ? 1 C DT 5 1_555 D DA 6 1_555 C DA 6 1_555 D DT 5 1_555 0.373 1.710 3.345 4.738 -2.020 42.238 2.565 -0.027 3.285 -2.790 -6.546 42.537 13 CC_DT25DA26:DT35DA36_DD C 25 ? D 36 ? C 26 ? D 35 ? 1 C DA 6 1_555 D DT 5 1_555 A UFP 7 1_555 D DA 4 1_555 0.146 -0.477 2.906 -4.227 4.973 27.318 -2.005 -1.171 2.725 10.343 8.792 28.072 14 CA_DA26UFP7:DA34DT35_DD C 26 ? D 35 ? A 7 ? D 34 ? 1 A UFP 7 1_555 D DA 4 1_555 A DC 8 1_555 D DG 3 1_555 0.140 2.054 3.940 -2.502 7.374 41.053 1.907 -0.528 4.216 10.402 3.529 41.754 15 AA_UFP7DC8:DG33DA34_DD A 7 ? D 34 ? A 8 ? D 33 ? 1 A DC 8 1_555 D DG 3 1_555 A DG 9 1_555 D DC 2 1_555 -0.620 2.787 2.971 -4.967 -13.374 38.956 5.068 0.459 2.009 -19.284 7.162 41.391 16 AA_DC8DG9:DC32DG33_DD A 8 ? D 33 ? A 9 ? D 32 ? 1 A DG 9 1_555 D DC 2 1_555 A DG 10 1_555 D DC 1 1_555 -1.095 1.559 3.421 -3.045 -0.862 38.220 2.488 1.265 3.460 -1.314 4.641 38.346 17 AA_DG9DG10:DC31DC32_DD A 9 ? D 32 ? A 10 ? D 31 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ORG _pdbx_initial_refinement_model.details ? #