HEADER HYDROLASE 28-AUG-12 4GT1 TITLE CRYSTAL STRUCTURE OF A MEAB- AND MMAA-LIKE GTPASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO 2'-DEOXYGUANOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GTPASE RV1496/MT1543; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT1543, MTCY277.18, RV1496; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, GTPASE, ATPASE, KEYWDS 4 SUBSTRATE-SPECIFICITY, HYDROLASE, G-PROTEIN, RAS-LIKE GTPASE, ARGK KEYWDS 5 SUPERFAMILY, CHAIN SWAPPED HOMODIMER EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 13-SEP-23 4GT1 1 REMARK SEQADV REVDAT 4 03-JUN-15 4GT1 1 JRNL REVDAT 3 15-APR-15 4GT1 1 JRNL REVDAT 2 11-MAR-15 4GT1 1 JRNL REVDAT 1 05-SEP-12 4GT1 0 JRNL AUTH T.E.EDWARDS,L.BAUGH,J.BULLEN,R.O.BAYDO,P.WITTE,K.THOMPKINS, JRNL AUTH 2 I.Q.PHAN,J.ABENDROTH,M.C.CLIFTON,B.SANKARAN,W.C.VAN VOORHIS, JRNL AUTH 3 P.J.MYLER,B.L.STAKER,C.GRUNDNER,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-LIKE JRNL TITL 2 GTPASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 91 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25832174 JRNL DOI 10.1007/S10969-015-9197-2 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2279 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2219 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3111 ; 1.514 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5042 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.771 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;12.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 333 REMARK 3 RESIDUE RANGE : A 335 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3135 28.1008 -8.1957 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0920 REMARK 3 T33: 0.0608 T12: 0.0271 REMARK 3 T13: -0.0212 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.3515 L22: 0.6269 REMARK 3 L33: 0.7407 L12: 0.2641 REMARK 3 L13: 0.4984 L23: 0.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: 0.0847 S13: -0.0676 REMARK 3 S21: 0.0830 S22: -0.0036 S23: -0.0849 REMARK 3 S31: 0.1550 S32: 0.1298 S33: -0.1041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4GT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYTUD.00200.A.A1 AT 22 MG/ML WITH 4 MM REMARK 280 DGTP AGAINST 0.1 M NAKHPO4, 48% PEG 200, 0.2 M NACL, CRYSTAL REMARK 280 TRACKING ID 236287B6, UNIQUE PUCK ID AQU7-6, PH 5.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.96000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.96000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.23000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.91000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.96000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.91000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.23000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 9 REMARK 465 PRO A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 THR A 99 REMARK 465 ARG A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 ILE A 105 REMARK 465 LEU A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 LYS A 109 REMARK 465 THR A 110 REMARK 465 ARG A 111 REMARK 465 PRO A 125 REMARK 465 SER A 126 REMARK 465 PRO A 127 REMARK 465 THR A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 ARG A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 SER A 35 OG REMARK 470 THR A 36 OG1 CG2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 THR A 131 OG1 CG2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 161 CG1 CG2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 295 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 295 CZ3 CH2 REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 190 O HOH A 600 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 545 O HOH A 603 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 163 30.99 -95.09 REMARK 500 ALA A 181 51.01 -90.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MD0 RELATED DB: PDB REMARK 900 RV1496 BOUND TO GDP REMARK 900 RELATED ID: 3NXS RELATED DB: PDB REMARK 900 RV1496 ORTHOLOG FROM M. SMEGMATIS BOUND TO GDP REMARK 900 RELATED ID: 3TK1 RELATED DB: PDB REMARK 900 RV1496 ORTHOLOG FROM M. THERMORESISTIBLE BOUND TO GDP REMARK 900 RELATED ID: 3P32 RELATED DB: PDB REMARK 900 RV1496 CO-CRYSTALLIZED WITH GTP REMARK 900 RELATED ID: MYTUD.00200.A RELATED DB: TARGETTRACK DBREF 4GT1 A 1 334 UNP P63577 Y1496_MYCTU 1 334 SEQADV 4GT1 MET A -20 UNP P63577 INITIATING METHIONINE SEQADV 4GT1 ALA A -19 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -18 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -17 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -16 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -15 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -14 UNP P63577 EXPRESSION TAG SEQADV 4GT1 HIS A -13 UNP P63577 EXPRESSION TAG SEQADV 4GT1 MET A -12 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLY A -11 UNP P63577 EXPRESSION TAG SEQADV 4GT1 THR A -10 UNP P63577 EXPRESSION TAG SEQADV 4GT1 LEU A -9 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLU A -8 UNP P63577 EXPRESSION TAG SEQADV 4GT1 ALA A -7 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLN A -6 UNP P63577 EXPRESSION TAG SEQADV 4GT1 THR A -5 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLN A -4 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLY A -3 UNP P63577 EXPRESSION TAG SEQADV 4GT1 PRO A -2 UNP P63577 EXPRESSION TAG SEQADV 4GT1 GLY A -1 UNP P63577 EXPRESSION TAG SEQADV 4GT1 SER A 0 UNP P63577 EXPRESSION TAG SEQRES 1 A 355 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 355 ALA GLN THR GLN GLY PRO GLY SER MET MET ALA ALA SER SEQRES 3 A 355 HIS ASP ASP ASP THR VAL ASP GLY LEU ALA THR ALA VAL SEQRES 4 A 355 ARG GLY GLY ASP ARG ALA ALA LEU PRO ARG ALA ILE THR SEQRES 5 A 355 LEU VAL GLU SER THR ARG PRO ASP HIS ARG GLU GLN ALA SEQRES 6 A 355 GLN GLN LEU LEU LEU ARG LEU LEU PRO ASP SER GLY ASN SEQRES 7 A 355 ALA HIS ARG VAL GLY ILE THR GLY VAL PRO GLY VAL GLY SEQRES 8 A 355 LYS SER THR ALA ILE GLU ALA LEU GLY MET HIS LEU ILE SEQRES 9 A 355 GLU ARG GLY HIS ARG VAL ALA VAL LEU ALA VAL ASP PRO SEQRES 10 A 355 SER SER THR ARG THR GLY GLY SER ILE LEU GLY ASP LYS SEQRES 11 A 355 THR ARG MET ALA ARG LEU ALA VAL HIS PRO ASN ALA TYR SEQRES 12 A 355 ILE ARG PRO SER PRO THR SER GLY THR LEU GLY GLY VAL SEQRES 13 A 355 THR ARG ALA THR ARG GLU THR VAL VAL LEU LEU GLU ALA SEQRES 14 A 355 ALA GLY PHE ASP VAL ILE LEU ILE GLU THR VAL GLY VAL SEQRES 15 A 355 GLY GLN SER GLU VAL ALA VAL ALA ASN MET VAL ASP THR SEQRES 16 A 355 PHE VAL LEU LEU THR LEU ALA ARG THR GLY ASP GLN LEU SEQRES 17 A 355 GLN GLY ILE LYS LYS GLY VAL LEU GLU LEU ALA ASP ILE SEQRES 18 A 355 VAL VAL VAL ASN LYS ALA ASP GLY GLU HIS HIS LYS GLU SEQRES 19 A 355 ALA ARG LEU ALA ALA ARG GLU LEU SER ALA ALA ILE ARG SEQRES 20 A 355 LEU ILE TYR PRO ARG GLU ALA LEU TRP ARG PRO PRO VAL SEQRES 21 A 355 LEU THR MET SER ALA VAL GLU GLY ARG GLY LEU ALA GLU SEQRES 22 A 355 LEU TRP ASP THR VAL GLU ARG HIS ARG GLN VAL LEU THR SEQRES 23 A 355 GLY ALA GLY GLU PHE ASP ALA ARG ARG ARG ASP GLN GLN SEQRES 24 A 355 VAL ASP TRP THR TRP GLN LEU VAL ARG ASP ALA VAL LEU SEQRES 25 A 355 ASP ARG VAL TRP SER ASN PRO THR VAL ARG LYS VAL ARG SEQRES 26 A 355 SER GLU LEU GLU ARG ARG VAL ARG ALA GLY GLU LEU THR SEQRES 27 A 355 PRO ALA LEU ALA ALA GLN GLN ILE LEU GLU ILE ALA ASN SEQRES 28 A 355 LEU THR ASP ARG HET DGI A 401 27 HET PGE A 402 10 HET PGE A 403 10 HET CL A 404 1 HETNAM DGI 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION FORMUL 2 DGI C10 H15 N5 O10 P2 FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 CL CL 1- FORMUL 6 HOH *140(H2 O) HELIX 1 1 THR A 10 GLY A 21 1 12 HELIX 2 2 ALA A 24 SER A 35 1 12 HELIX 3 3 ARG A 37 LEU A 52 1 16 HELIX 4 4 PRO A 53 SER A 55 5 3 HELIX 5 5 GLY A 70 ARG A 85 1 16 HELIX 6 6 ALA A 113 VAL A 117 1 5 HELIX 7 7 LEU A 132 ALA A 149 1 18 HELIX 8 8 GLN A 163 ASN A 170 1 8 HELIX 9 9 VAL A 194 ALA A 198 5 5 HELIX 10 10 ASP A 207 GLU A 209 5 3 HELIX 11 11 HIS A 210 TYR A 229 1 20 HELIX 12 12 SER A 243 GLY A 247 5 5 HELIX 13 13 GLY A 249 ALA A 267 1 19 HELIX 14 14 GLY A 268 SER A 296 1 29 HELIX 15 15 ASN A 297 ALA A 313 1 17 HELIX 16 16 THR A 317 THR A 332 1 16 SHEET 1 A 7 ALA A 121 ARG A 124 0 SHEET 2 A 7 VAL A 89 VAL A 94 1 N VAL A 91 O TYR A 122 SHEET 3 A 7 VAL A 153 THR A 158 1 O LEU A 155 N ALA A 90 SHEET 4 A 7 HIS A 59 THR A 64 1 N VAL A 61 O ILE A 154 SHEET 5 A 7 THR A 174 LEU A 180 1 O VAL A 176 N GLY A 62 SHEET 6 A 7 ILE A 200 ASN A 204 1 O VAL A 202 N LEU A 177 SHEET 7 A 7 VAL A 239 THR A 241 1 O LEU A 240 N VAL A 203 SITE 1 AC1 16 GLY A 68 VAL A 69 GLY A 70 LYS A 71 SITE 2 AC1 16 SER A 72 THR A 73 ASN A 204 LYS A 205 SITE 3 AC1 16 ASP A 207 SER A 243 ALA A 244 VAL A 245 SITE 4 AC1 16 HOH A 568 HOH A 617 HOH A 618 HOH A 629 SITE 1 AC2 7 GLU A 232 ALA A 233 LEU A 234 TRP A 235 SITE 2 AC2 7 ARG A 236 HOH A 615 HOH A 620 SITE 1 AC3 11 LYS A 192 GLU A 196 LEU A 197 ALA A 198 SITE 2 AC3 11 ASP A 199 TYR A 229 GLU A 232 TRP A 235 SITE 3 AC3 11 ARG A 273 HOH A 541 HOH A 542 SITE 1 AC4 4 GLY A 268 PHE A 270 ASP A 271 HOH A 616 CRYST1 65.920 187.820 66.460 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015047 0.00000