HEADER TRANSFERASE 28-AUG-12 4GT4 TITLE STRUCTURE OF UNLIGANDED, INACTIVE ROR2 KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TYROSINE KINASE DOMAIN (UNP RESIDUES 452-753); COMPND 5 SYNONYM: NEUROTROPHIC TYROSINE KINASE, RECEPTOR-RELATED 2; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRKR2, ROR2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS ATP BINDING, PHOSPHORYLATION, MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MENDROLA,M.A.LEMMON REVDAT 3 21-NOV-12 4GT4 1 JRNL REVDAT 2 03-OCT-12 4GT4 1 JRNL REVDAT 1 26-SEP-12 4GT4 0 JRNL AUTH S.C.ARTIM,J.M.MENDROLA,M.A.LEMMON JRNL TITL ASSESSING THE RANGE OF KINASE AUTOINHIBITION MECHANISMS IN JRNL TITL 2 THE INSULIN RECEPTOR FAMILY. JRNL REF BIOCHEM.J. V. 448 213 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22992069 JRNL DOI 10.1042/BJ20121365 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1108) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8085 - 5.0033 1.00 2909 158 0.1865 0.1934 REMARK 3 2 5.0033 - 3.9720 1.00 2798 144 0.1495 0.1747 REMARK 3 3 3.9720 - 3.4701 1.00 2752 161 0.1637 0.1956 REMARK 3 4 3.4701 - 3.1529 1.00 2774 145 0.1741 0.1795 REMARK 3 5 3.1529 - 2.9270 1.00 2746 132 0.1824 0.2362 REMARK 3 6 2.9270 - 2.7544 1.00 2746 158 0.1897 0.2330 REMARK 3 7 2.7544 - 2.6165 1.00 2730 150 0.1943 0.2530 REMARK 3 8 2.6165 - 2.5026 1.00 2748 147 0.2056 0.2321 REMARK 3 9 2.5026 - 2.4060 0.99 2719 134 0.2120 0.2595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4400 REMARK 3 ANGLE : 0.603 5971 REMARK 3 CHIRALITY : 0.044 659 REMARK 3 PLANARITY : 0.003 754 REMARK 3 DIHEDRAL : 11.959 1539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 464 through 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3470 16.4104 -26.3682 REMARK 3 T TENSOR REMARK 3 T11: 0.4453 T22: 0.4359 REMARK 3 T33: 0.5430 T12: 0.0614 REMARK 3 T13: 0.0200 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 5.0524 L22: 5.2085 REMARK 3 L33: 4.7515 L12: 0.3797 REMARK 3 L13: -1.3463 L23: 0.3105 REMARK 3 S TENSOR REMARK 3 S11: 0.3093 S12: 0.3705 S13: 0.9821 REMARK 3 S21: -0.2469 S22: -0.0735 S23: 0.3925 REMARK 3 S31: -0.6957 S32: -0.1941 S33: -0.2726 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 531 through 631 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3305 1.0262 -20.6624 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1926 REMARK 3 T33: 0.1779 T12: -0.0407 REMARK 3 T13: -0.0133 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.3921 L22: 2.5536 REMARK 3 L33: 3.4406 L12: 0.3661 REMARK 3 L13: -0.5028 L23: -0.4554 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.1951 S13: 0.1194 REMARK 3 S21: -0.0324 S22: 0.0811 S23: 0.3504 REMARK 3 S31: -0.0333 S32: -0.2393 S33: -0.1264 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 632 through 751 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5838 3.2188 -14.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.1377 REMARK 3 T33: 0.0916 T12: -0.0222 REMARK 3 T13: -0.0027 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.2418 L22: 3.2642 REMARK 3 L33: 3.3256 L12: -0.0682 REMARK 3 L13: -1.1395 L23: 0.3466 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: 0.0775 S13: 0.0215 REMARK 3 S21: -0.0360 S22: -0.0817 S23: -0.0432 REMARK 3 S31: -0.0658 S32: -0.0296 S33: -0.0274 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'B' and (resid 464 through 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2804 -33.6646 -2.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.3994 T22: 0.4979 REMARK 3 T33: 0.4653 T12: 0.0709 REMARK 3 T13: -0.1460 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 4.4856 L22: 2.2662 REMARK 3 L33: 4.4513 L12: 0.6679 REMARK 3 L13: 0.9578 L23: 1.1653 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: -0.3996 S13: -0.4849 REMARK 3 S21: 0.2777 S22: 0.2199 S23: -0.5076 REMARK 3 S31: 0.1958 S32: 0.6356 S33: -0.3015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'B' and (resid 531 through 631 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6091 -28.2349 -7.2342 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1740 REMARK 3 T33: 0.1704 T12: -0.0523 REMARK 3 T13: 0.0308 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.1690 L22: 3.6675 REMARK 3 L33: 3.0541 L12: -0.1642 REMARK 3 L13: 0.1776 L23: 0.5961 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.1263 S13: -0.1586 REMARK 3 S21: 0.0896 S22: 0.0429 S23: 0.0750 REMARK 3 S31: 0.2507 S32: 0.1002 S33: -0.0387 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and (resid 632 through 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.3071 -13.0565 -14.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1320 REMARK 3 T33: 0.1876 T12: -0.0331 REMARK 3 T13: -0.0228 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.5550 L22: 3.7248 REMARK 3 L33: 3.1110 L12: 0.4049 REMARK 3 L13: -0.1338 L23: 0.6640 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.0062 S13: 0.3652 REMARK 3 S21: 0.0618 S22: 0.0526 S23: 0.2075 REMARK 3 S31: -0.1547 S32: -0.0342 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB074599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26279 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M MAGNESIUM NITRATE REMARK 280 HEXAHYDRATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.37950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.37950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.41700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.45900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.41700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.45900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.37950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.41700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.45900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.37950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.41700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.45900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 MET A 452 REMARK 465 GLU A 453 REMARK 465 MET A 454 REMARK 465 PRO A 455 REMARK 465 LEU A 456 REMARK 465 ILE A 457 REMARK 465 ASN A 458 REMARK 465 GLN A 459 REMARK 465 HIS A 460 REMARK 465 LYS A 461 REMARK 465 GLN A 462 REMARK 465 ALA A 463 REMARK 465 GLY A 494 REMARK 465 PRO A 495 REMARK 465 ALA A 496 REMARK 465 PRO A 497 REMARK 465 GLY A 498 REMARK 465 GLU A 499 REMARK 465 GLN A 500 REMARK 465 LYS A 512 REMARK 465 PRO A 516 REMARK 465 SER A 576 REMARK 465 THR A 577 REMARK 465 ASP A 578 REMARK 465 ASP A 579 REMARK 465 ASP A 580 REMARK 465 LEU A 752 REMARK 465 SER A 753 REMARK 465 HIS B 446 REMARK 465 HIS B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 MET B 452 REMARK 465 GLU B 453 REMARK 465 MET B 454 REMARK 465 PRO B 455 REMARK 465 LEU B 456 REMARK 465 ILE B 457 REMARK 465 ASN B 458 REMARK 465 GLN B 459 REMARK 465 HIS B 460 REMARK 465 LYS B 461 REMARK 465 GLN B 462 REMARK 465 ALA B 463 REMARK 465 GLY B 494 REMARK 465 PRO B 495 REMARK 465 ALA B 496 REMARK 465 PRO B 497 REMARK 465 GLY B 498 REMARK 465 GLU B 499 REMARK 465 GLN B 500 REMARK 465 GLY B 515 REMARK 465 ASP B 573 REMARK 465 VAL B 574 REMARK 465 GLY B 575 REMARK 465 SER B 576 REMARK 465 THR B 577 REMARK 465 ASP B 578 REMARK 465 ASP B 579 REMARK 465 ASP B 580 REMARK 465 SER B 753 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 SER A 469 OG REMARK 470 ARG A 474 NE CZ NH1 NH2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 510 CG CD CE REMARK 470 ASP A 511 CG OD1 OD2 REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 ARG A 518 CD NE CZ NH1 NH2 REMARK 470 ARG A 522 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 523 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 532 CG CD OE1 NE2 REMARK 470 THR A 544 OG1 CG2 REMARK 470 ASP A 546 CG OD1 OD2 REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 ARG A 581 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 614 NZ REMARK 470 GLU A 639 CD OE1 OE2 REMARK 470 LYS A 668 CG CD CE NZ REMARK 470 GLN A 699 CD OE1 NE2 REMARK 470 ARG A 708 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 731 CG CD OE1 OE2 REMARK 470 ARG A 747 CZ NH1 NH2 REMARK 470 ASN A 751 CG OD1 ND2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 470 ARG B 474 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 477 CG CD OE1 OE2 REMARK 470 GLU B 481 CG CD OE1 OE2 REMARK 470 LYS B 486 CD CE NZ REMARK 470 LYS B 489 CG CD CE NZ REMARK 470 THR B 501 OG1 CG2 REMARK 470 LYS B 510 CE NZ REMARK 470 ASP B 511 CG OD1 OD2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 ARG B 518 NE CZ NH1 REMARK 470 GLU B 519 CG CD OE1 OE2 REMARK 470 GLU B 520 CG CD OE1 OE2 REMARK 470 ARG B 522 NE CZ NH1 NH2 REMARK 470 THR B 544 OG1 CG2 REMARK 470 LYS B 545 CG CD CE NZ REMARK 470 ASP B 546 CG OD1 OD2 REMARK 470 HIS B 571 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 572 OG REMARK 470 ARG B 581 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 633 CG OD1 OD2 REMARK 470 LYS B 668 NZ REMARK 470 ARG B 708 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 715 CG OD1 OD2 REMARK 470 ARG B 747 NE CZ NH1 NH2 REMARK 470 LEU B 752 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 476 -138.33 -129.32 REMARK 500 ASP A 482 -159.93 -145.67 REMARK 500 ASP A 615 51.69 -155.39 REMARK 500 ASP A 633 62.63 -119.64 REMARK 500 TRP A 729 35.20 -98.80 REMARK 500 MET B 476 -155.83 -137.57 REMARK 500 LYS B 614 -12.79 78.13 REMARK 500 ASP B 615 51.64 -150.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GT5 RELATED DB: PDB DBREF 4GT4 A 452 753 UNP Q01974 ROR2_HUMAN 452 753 DBREF 4GT4 B 452 753 UNP Q01974 ROR2_HUMAN 452 753 SEQADV 4GT4 HIS A 446 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS A 447 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS A 448 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS A 449 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS A 450 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS A 451 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 446 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 447 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 448 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 449 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 450 UNP Q01974 EXPRESSION TAG SEQADV 4GT4 HIS B 451 UNP Q01974 EXPRESSION TAG SEQRES 1 A 308 HIS HIS HIS HIS HIS HIS MET GLU MET PRO LEU ILE ASN SEQRES 2 A 308 GLN HIS LYS GLN ALA LYS LEU LYS GLU ILE SER LEU SER SEQRES 3 A 308 ALA VAL ARG PHE MET GLU GLU LEU GLY GLU ASP ARG PHE SEQRES 4 A 308 GLY LYS VAL TYR LYS GLY HIS LEU PHE GLY PRO ALA PRO SEQRES 5 A 308 GLY GLU GLN THR GLN ALA VAL ALA ILE LYS THR LEU LYS SEQRES 6 A 308 ASP LYS ALA GLU GLY PRO LEU ARG GLU GLU PHE ARG HIS SEQRES 7 A 308 GLU ALA MET LEU ARG ALA ARG LEU GLN HIS PRO ASN VAL SEQRES 8 A 308 VAL CYS LEU LEU GLY VAL VAL THR LYS ASP GLN PRO LEU SEQRES 9 A 308 SER MET ILE PHE SER TYR CYS SER HIS GLY ASP LEU HIS SEQRES 10 A 308 GLU PHE LEU VAL MET ARG SER PRO HIS SER ASP VAL GLY SEQRES 11 A 308 SER THR ASP ASP ASP ARG THR VAL LYS SER ALA LEU GLU SEQRES 12 A 308 PRO PRO ASP PHE VAL HIS LEU VAL ALA GLN ILE ALA ALA SEQRES 13 A 308 GLY MET GLU TYR LEU SER SER HIS HIS VAL VAL HIS LYS SEQRES 14 A 308 ASP LEU ALA THR ARG ASN VAL LEU VAL TYR ASP LYS LEU SEQRES 15 A 308 ASN VAL LYS ILE SER ASP LEU GLY LEU PHE ARG GLU VAL SEQRES 16 A 308 TYR ALA ALA ASP TYR TYR LYS LEU LEU GLY ASN SER LEU SEQRES 17 A 308 LEU PRO ILE ARG TRP MET ALA PRO GLU ALA ILE MET TYR SEQRES 18 A 308 GLY LYS PHE SER ILE ASP SER ASP ILE TRP SER TYR GLY SEQRES 19 A 308 VAL VAL LEU TRP GLU VAL PHE SER TYR GLY LEU GLN PRO SEQRES 20 A 308 TYR CYS GLY TYR SER ASN GLN ASP VAL VAL GLU MET ILE SEQRES 21 A 308 ARG ASN ARG GLN VAL LEU PRO CYS PRO ASP ASP CYS PRO SEQRES 22 A 308 ALA TRP VAL TYR ALA LEU MET ILE GLU CYS TRP ASN GLU SEQRES 23 A 308 PHE PRO SER ARG ARG PRO ARG PHE LYS ASP ILE HIS SER SEQRES 24 A 308 ARG LEU ARG ALA TRP GLY ASN LEU SER SEQRES 1 B 308 HIS HIS HIS HIS HIS HIS MET GLU MET PRO LEU ILE ASN SEQRES 2 B 308 GLN HIS LYS GLN ALA LYS LEU LYS GLU ILE SER LEU SER SEQRES 3 B 308 ALA VAL ARG PHE MET GLU GLU LEU GLY GLU ASP ARG PHE SEQRES 4 B 308 GLY LYS VAL TYR LYS GLY HIS LEU PHE GLY PRO ALA PRO SEQRES 5 B 308 GLY GLU GLN THR GLN ALA VAL ALA ILE LYS THR LEU LYS SEQRES 6 B 308 ASP LYS ALA GLU GLY PRO LEU ARG GLU GLU PHE ARG HIS SEQRES 7 B 308 GLU ALA MET LEU ARG ALA ARG LEU GLN HIS PRO ASN VAL SEQRES 8 B 308 VAL CYS LEU LEU GLY VAL VAL THR LYS ASP GLN PRO LEU SEQRES 9 B 308 SER MET ILE PHE SER TYR CYS SER HIS GLY ASP LEU HIS SEQRES 10 B 308 GLU PHE LEU VAL MET ARG SER PRO HIS SER ASP VAL GLY SEQRES 11 B 308 SER THR ASP ASP ASP ARG THR VAL LYS SER ALA LEU GLU SEQRES 12 B 308 PRO PRO ASP PHE VAL HIS LEU VAL ALA GLN ILE ALA ALA SEQRES 13 B 308 GLY MET GLU TYR LEU SER SER HIS HIS VAL VAL HIS LYS SEQRES 14 B 308 ASP LEU ALA THR ARG ASN VAL LEU VAL TYR ASP LYS LEU SEQRES 15 B 308 ASN VAL LYS ILE SER ASP LEU GLY LEU PHE ARG GLU VAL SEQRES 16 B 308 TYR ALA ALA ASP TYR TYR LYS LEU LEU GLY ASN SER LEU SEQRES 17 B 308 LEU PRO ILE ARG TRP MET ALA PRO GLU ALA ILE MET TYR SEQRES 18 B 308 GLY LYS PHE SER ILE ASP SER ASP ILE TRP SER TYR GLY SEQRES 19 B 308 VAL VAL LEU TRP GLU VAL PHE SER TYR GLY LEU GLN PRO SEQRES 20 B 308 TYR CYS GLY TYR SER ASN GLN ASP VAL VAL GLU MET ILE SEQRES 21 B 308 ARG ASN ARG GLN VAL LEU PRO CYS PRO ASP ASP CYS PRO SEQRES 22 B 308 ALA TRP VAL TYR ALA LEU MET ILE GLU CYS TRP ASN GLU SEQRES 23 B 308 PHE PRO SER ARG ARG PRO ARG PHE LYS ASP ILE HIS SER SEQRES 24 B 308 ARG LEU ARG ALA TRP GLY ASN LEU SER HET NO3 A 801 4 HET NO3 A 802 4 HET NO3 B 801 4 HET NO3 B 802 4 HETNAM NO3 NITRATE ION FORMUL 3 NO3 4(N O3 1-) FORMUL 7 HOH *228(H2 O) HELIX 1 1 SER A 469 SER A 471 5 3 HELIX 2 2 GLY A 515 GLY A 515 1 1 HELIX 3 3 ARG A 518 LEU A 531 1 14 HELIX 4 4 ASP A 560 MET A 567 1 8 HELIX 5 5 GLU A 588 HIS A 609 1 22 HELIX 6 6 ALA A 617 ARG A 619 5 3 HELIX 7 7 ASP A 625 LEU A 627 5 3 HELIX 8 8 ARG A 638 TYR A 645 5 8 HELIX 9 9 PRO A 655 MET A 659 5 5 HELIX 10 10 ALA A 660 GLY A 667 1 8 HELIX 11 11 SER A 670 SER A 687 1 18 HELIX 12 12 SER A 697 ASN A 707 1 11 HELIX 13 13 PRO A 718 TRP A 729 1 12 HELIX 14 14 PHE A 732 ARG A 736 5 5 HELIX 15 15 ARG A 738 ALA A 748 1 11 HELIX 16 16 SER B 469 SER B 471 5 3 HELIX 17 17 LEU B 517 ARG B 530 1 14 HELIX 18 18 ASP B 560 MET B 567 1 8 HELIX 19 19 GLU B 588 HIS B 609 1 22 HELIX 20 20 ALA B 617 ARG B 619 5 3 HELIX 21 21 ASP B 625 LEU B 627 5 3 HELIX 22 22 ARG B 638 TYR B 645 5 8 HELIX 23 23 PRO B 655 MET B 659 5 5 HELIX 24 24 ALA B 660 GLY B 667 1 8 HELIX 25 25 SER B 670 SER B 687 1 18 HELIX 26 26 SER B 697 ASN B 707 1 11 HELIX 27 27 PRO B 718 TRP B 729 1 12 HELIX 28 28 PHE B 732 ARG B 736 5 5 HELIX 29 29 ARG B 738 TRP B 749 1 12 SHEET 1 A 5 VAL A 473 GLU A 481 0 SHEET 2 A 5 LYS A 486 LEU A 492 -1 O LYS A 489 N GLU A 477 SHEET 3 A 5 GLN A 502 THR A 508 -1 O GLN A 502 N LEU A 492 SHEET 4 A 5 SER A 550 SER A 554 -1 O PHE A 553 N ALA A 505 SHEET 5 A 5 LEU A 539 VAL A 543 -1 N GLY A 541 O ILE A 552 SHEET 1 B 2 VAL A 583 LYS A 584 0 SHEET 2 B 2 LYS B 668 PHE B 669 -1 O PHE B 669 N VAL A 583 SHEET 1 C 2 VAL A 621 VAL A 623 0 SHEET 2 C 2 VAL A 629 ILE A 631 -1 O LYS A 630 N LEU A 622 SHEET 1 D 5 VAL B 473 ASP B 482 0 SHEET 2 D 5 GLY B 485 LEU B 492 -1 O GLY B 485 N ASP B 482 SHEET 3 D 5 ALA B 503 THR B 508 -1 O ILE B 506 N TYR B 488 SHEET 4 D 5 SER B 550 SER B 554 -1 O PHE B 553 N ALA B 505 SHEET 5 D 5 LEU B 539 VAL B 543 -1 N VAL B 543 O SER B 550 SHEET 1 E 2 VAL B 621 VAL B 623 0 SHEET 2 E 2 VAL B 629 ILE B 631 -1 O LYS B 630 N LEU B 622 SSBOND 1 CYS A 694 CYS A 694 1555 4555 2.03 SSBOND 2 CYS B 694 CYS B 694 1555 3454 2.03 CISPEP 1 GLN A 547 PRO A 548 0 -1.17 CISPEP 2 TRP A 749 GLY A 750 0 -0.35 CISPEP 3 GLN B 547 PRO B 548 0 -0.97 SITE 1 AC1 6 SER A 607 ARG A 735 ARG A 738 PHE A 739 SITE 2 AC1 6 LYS A 740 HOH A 946 SITE 1 AC2 5 PHE A 592 TYR A 688 ASP A 716 HOH A 916 SITE 2 AC2 5 HOH A1009 SITE 1 AC3 4 SER B 557 HIS B 558 TYR B 624 ASP B 625 SITE 1 AC4 5 PHE B 592 PHE B 686 TYR B 688 ASP B 716 SITE 2 AC4 5 HOH B 994 CRYST1 102.834 112.918 114.759 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008714 0.00000