data_4GVC # _entry.id 4GVC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GVC pdb_00004gvc 10.2210/pdb4gvc/pdb RCSB RCSB074678 ? ? WWPDB D_1000074678 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KZD 'The Tiam1 PDZ domain in apo state' unspecified PDB 3KZE 'The Tiam1 PDZ domain complexed with model peptide' unspecified PDB 4GVD 'The Tiam1 PDZ domain complexed with Syndecan1 peptide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GVC _pdbx_database_status.recvd_initial_deposition_date 2012-08-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, X.' 1 'Shepherd, T.R.' 2 'Murray, A.M.' 3 'Xu, Z.' 4 'Fuentes, E.J.' 5 # _citation.id primary _citation.title 'The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 342 _citation.page_last 354 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23395182 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.01.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, X.' 1 ? primary 'Shepherd, T.R.' 2 ? primary 'Murray, A.M.' 3 ? primary 'Xu, Z.' 4 ? primary 'Fuentes, E.J.' 5 ? # _cell.entry_id 4GVC _cell.length_a 26.717 _cell.length_b 50.135 _cell.length_c 57.712 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GVC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-lymphoma invasion and metastasis-inducing protein 1' 10154.440 1 ? ? 'PDZ domain (UNP residues 841-930)' ? 2 polymer syn Syndecan-1 1096.060 1 ? ? 'UNP residues 303-310' ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn '5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)' 251.302 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 96 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TIAM-1 2 SYND1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS QPSLGLLVRTYPEL ; ;GAMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS QPSLGLLVRTYPEL ; A ? 2 'polypeptide(L)' no yes 'TKQEEF(PTR)A' TKQEEFYA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 LYS n 1 6 VAL n 1 7 THR n 1 8 HIS n 1 9 SER n 1 10 ILE n 1 11 HIS n 1 12 ILE n 1 13 GLU n 1 14 LYS n 1 15 SER n 1 16 ASP n 1 17 THR n 1 18 ALA n 1 19 ALA n 1 20 ASP n 1 21 THR n 1 22 TYR n 1 23 GLY n 1 24 PHE n 1 25 SER n 1 26 LEU n 1 27 SER n 1 28 SER n 1 29 VAL n 1 30 GLU n 1 31 GLU n 1 32 ASP n 1 33 GLY n 1 34 ILE n 1 35 ARG n 1 36 ARG n 1 37 LEU n 1 38 TYR n 1 39 VAL n 1 40 ASN n 1 41 SER n 1 42 VAL n 1 43 LYS n 1 44 GLU n 1 45 THR n 1 46 GLY n 1 47 LEU n 1 48 ALA n 1 49 SER n 1 50 LYS n 1 51 LYS n 1 52 GLY n 1 53 LEU n 1 54 LYS n 1 55 ALA n 1 56 GLY n 1 57 ASP n 1 58 GLU n 1 59 ILE n 1 60 LEU n 1 61 GLU n 1 62 ILE n 1 63 ASN n 1 64 ASN n 1 65 ARG n 1 66 ALA n 1 67 ALA n 1 68 ASP n 1 69 ALA n 1 70 LEU n 1 71 ASN n 1 72 SER n 1 73 SER n 1 74 MET n 1 75 LEU n 1 76 LYS n 1 77 ASP n 1 78 PHE n 1 79 LEU n 1 80 SER n 1 81 GLN n 1 82 PRO n 1 83 SER n 1 84 LEU n 1 85 GLY n 1 86 LEU n 1 87 LEU n 1 88 VAL n 1 89 ARG n 1 90 THR n 1 91 TYR n 1 92 PRO n 1 93 GLU n 1 94 LEU n 2 1 THR n 2 2 LYS n 2 3 GLN n 2 4 GLU n 2 5 GLU n 2 6 PHE n 2 7 PTR n 2 8 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TIAM1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain human _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET21A-6HIS-rTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TIAM1_HUMAN Q13009 1 ;KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSL GLLVRTYPEL ; 841 ? 2 UNP SDC1_HUMAN P18827 2 TKQEEFYA 303 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GVC A 5 ? 94 ? Q13009 841 ? 930 ? 841 930 2 2 4GVC B 1 ? 8 ? P18827 303 ? 310 ? 1 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GVC GLY A 1 ? UNP Q13009 ? ? 'expression tag' 837 1 1 4GVC ALA A 2 ? UNP Q13009 ? ? 'expression tag' 838 2 1 4GVC MET A 3 ? UNP Q13009 ? ? 'expression tag' 839 3 1 4GVC GLY A 4 ? UNP Q13009 ? ? 'expression tag' 840 4 1 4GVC HIS A 8 ? UNP Q13009 GLN 844 'SEE REMARK 999' 844 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ANS non-polymer . '5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)' 'DANSYL ACID' 'C12 H13 N O3 S' 251.302 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GVC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_percent_sol 28.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 25% PEG4000, 8% isopropanol, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2010-04-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 4GVC _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 37.85 _reflns.d_resolution_high 1.54 _reflns.number_obs 11440 _reflns.number_all 11979 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.4 _reflns.B_iso_Wilson_estimate 13.0 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.54 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_all 74.6 _reflns_shell.Rmerge_I_obs 0.121 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.3 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1685 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GVC _refine.ls_number_reflns_obs 10862 _refine.ls_number_reflns_all 10862 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.85 _refine.ls_d_res_high 1.54 _refine.ls_percent_reflns_obs 95.04 _refine.ls_R_factor_obs 0.16717 _refine.ls_R_factor_all 0.16717 _refine.ls_R_factor_R_work 0.16551 _refine.ls_R_factor_R_free 0.19964 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 546 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 13.551 _refine.aniso_B[1][1] 0.11 _refine.aniso_B[2][2] -0.08 _refine.aniso_B[3][3] -0.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.pdbx_starting_model 'PDB ENTRY 3KZD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.138 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.055 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.964 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 787 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 902 _refine_hist.d_res_high 1.54 _refine_hist.d_res_low 37.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.022 ? 810 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.265 2.013 ? 1091 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.231 5.000 ? 100 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 41.693 25.000 ? 34 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.195 15.000 ? 145 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17.547 15.000 ? 4 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.076 0.200 ? 122 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 593 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.920 1.500 ? 506 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.646 2.000 ? 802 ? 'X-RAY DIFFRACTION' r_scbond_it 2.648 3.000 ? 304 ? 'X-RAY DIFFRACTION' r_scangle_it 4.174 4.500 ? 289 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.111 3.000 ? 804 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.54 _refine_ls_shell.d_res_low 1.581 _refine_ls_shell.number_reflns_R_work 497 _refine_ls_shell.R_factor_R_work 0.163 _refine_ls_shell.percent_reflns_obs 60.73 _refine_ls_shell.R_factor_R_free 0.246 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 532 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4GVC _struct.title 'Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with phosphorylated Syndecan1 Peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GVC _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;phosphorylation, peptide conformational change, new binding pocket, scaffold signaling protein for cell adhesion and cell junction, syndecan1 P1 Tyr phosphorylation, sydencan1 N-terminal Thr dansylation, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 46 ? LYS A 51 ? GLY A 882 LYS A 887 1 ? 6 HELX_P HELX_P2 2 ASP A 68 ? LEU A 70 ? ASP A 904 LEU A 906 5 ? 3 HELX_P HELX_P3 3 ASN A 71 ? SER A 80 ? ASN A 907 SER A 916 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B THR 1 N ? ? ? 1_555 D ANS . S ? ? B THR 1 B ANS 101 1_555 ? ? ? ? ? ? ? 1.769 ? ? covale2 covale both ? B PHE 6 C ? ? ? 1_555 B PTR 7 N ? ? B PHE 6 B PTR 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? B PTR 7 C ? ? ? 1_555 B ALA 8 N ? ? B PTR 7 B ALA 8 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 7 ? GLU A 13 ? THR A 843 GLU A 849 A 2 SER A 83 ? ARG A 89 ? SER A 919 ARG A 925 A 3 GLU A 58 ? ILE A 62 ? GLU A 894 ILE A 898 A 4 ARG A 65 ? ALA A 66 ? ARG A 901 ALA A 902 B 1 THR A 7 ? GLU A 13 ? THR A 843 GLU A 849 B 2 SER A 83 ? ARG A 89 ? SER A 919 ARG A 925 B 3 GLU A 58 ? ILE A 62 ? GLU A 894 ILE A 898 B 4 ILE A 34 ? VAL A 42 ? ILE A 870 VAL A 878 B 5 PHE A 24 ? GLU A 31 ? PHE A 860 GLU A 867 B 6 GLU B 4 ? PTR B 7 ? GLU B 4 PTR B 7 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 10 ? N ILE A 846 O LEU A 86 ? O LEU A 922 A 2 3 O LEU A 87 ? O LEU A 923 N LEU A 60 ? N LEU A 896 A 3 4 N ILE A 62 ? N ILE A 898 O ARG A 65 ? O ARG A 901 B 1 2 N ILE A 10 ? N ILE A 846 O LEU A 86 ? O LEU A 922 B 2 3 O LEU A 87 ? O LEU A 923 N LEU A 60 ? N LEU A 896 B 3 4 O ILE A 59 ? O ILE A 895 N LEU A 37 ? N LEU A 873 B 4 5 O ARG A 36 ? O ARG A 872 N VAL A 29 ? N VAL A 865 B 5 6 N LEU A 26 ? N LEU A 862 O PHE B 6 ? O PHE B 6 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 1001 ? 1 'BINDING SITE FOR RESIDUE CL A 1001' AC2 Software B ANS 101 ? 6 'BINDING SITE FOR RESIDUE ANS B 101' AC3 Software B CL 102 ? 2 'BINDING SITE FOR RESIDUE CL B 102' AC4 Software B NA 103 ? 2 'BINDING SITE FOR RESIDUE NA B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 SER A 41 ? SER A 877 . ? 1_555 ? 2 AC2 6 VAL A 29 ? VAL A 865 . ? 1_555 ? 3 AC2 6 ARG A 65 ? ARG A 901 . ? 1_655 ? 4 AC2 6 ASN A 71 ? ASN A 907 . ? 1_655 ? 5 AC2 6 SER A 73 ? SER A 909 . ? 1_655 ? 6 AC2 6 MET A 74 ? MET A 910 . ? 1_655 ? 7 AC2 6 THR B 1 ? THR B 1 . ? 1_555 ? 8 AC3 2 LYS B 2 ? LYS B 2 . ? 1_555 ? 9 AC3 2 NA F . ? NA B 103 . ? 1_555 ? 10 AC4 2 HOH G . ? HOH A 1189 . ? 1_655 ? 11 AC4 2 CL E . ? CL B 102 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GVC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GVC _atom_sites.fract_transf_matrix[1][1] 0.037429 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019946 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017327 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 837 837 GLY GLY A . n A 1 2 ALA 2 838 838 ALA ALA A . n A 1 3 MET 3 839 839 MET MET A . n A 1 4 GLY 4 840 840 GLY GLY A . n A 1 5 LYS 5 841 841 LYS LYS A . n A 1 6 VAL 6 842 842 VAL VAL A . n A 1 7 THR 7 843 843 THR THR A . n A 1 8 HIS 8 844 844 HIS HIS A . n A 1 9 SER 9 845 845 SER SER A . n A 1 10 ILE 10 846 846 ILE ILE A . n A 1 11 HIS 11 847 847 HIS HIS A . n A 1 12 ILE 12 848 848 ILE ILE A . n A 1 13 GLU 13 849 849 GLU GLU A . n A 1 14 LYS 14 850 850 LYS LYS A . n A 1 15 SER 15 851 851 SER SER A . n A 1 16 ASP 16 852 852 ASP ASP A . n A 1 17 THR 17 853 853 THR THR A . n A 1 18 ALA 18 854 854 ALA ALA A . n A 1 19 ALA 19 855 855 ALA ALA A . n A 1 20 ASP 20 856 856 ASP ASP A . n A 1 21 THR 21 857 857 THR THR A . n A 1 22 TYR 22 858 858 TYR TYR A . n A 1 23 GLY 23 859 859 GLY GLY A . n A 1 24 PHE 24 860 860 PHE PHE A . n A 1 25 SER 25 861 861 SER SER A . n A 1 26 LEU 26 862 862 LEU LEU A . n A 1 27 SER 27 863 863 SER SER A . n A 1 28 SER 28 864 864 SER SER A . n A 1 29 VAL 29 865 865 VAL VAL A . n A 1 30 GLU 30 866 866 GLU GLU A . n A 1 31 GLU 31 867 867 GLU GLU A . n A 1 32 ASP 32 868 868 ASP ASP A . n A 1 33 GLY 33 869 869 GLY GLY A . n A 1 34 ILE 34 870 870 ILE ILE A . n A 1 35 ARG 35 871 871 ARG ARG A . n A 1 36 ARG 36 872 872 ARG ARG A . n A 1 37 LEU 37 873 873 LEU LEU A . n A 1 38 TYR 38 874 874 TYR TYR A . n A 1 39 VAL 39 875 875 VAL VAL A . n A 1 40 ASN 40 876 876 ASN ASN A . n A 1 41 SER 41 877 877 SER SER A . n A 1 42 VAL 42 878 878 VAL VAL A . n A 1 43 LYS 43 879 879 LYS LYS A . n A 1 44 GLU 44 880 880 GLU GLU A . n A 1 45 THR 45 881 881 THR THR A . n A 1 46 GLY 46 882 882 GLY GLY A . n A 1 47 LEU 47 883 883 LEU LEU A . n A 1 48 ALA 48 884 884 ALA ALA A . n A 1 49 SER 49 885 885 SER SER A . n A 1 50 LYS 50 886 886 LYS LYS A . n A 1 51 LYS 51 887 887 LYS LYS A . n A 1 52 GLY 52 888 888 GLY GLY A . n A 1 53 LEU 53 889 889 LEU LEU A . n A 1 54 LYS 54 890 890 LYS LYS A . n A 1 55 ALA 55 891 891 ALA ALA A . n A 1 56 GLY 56 892 892 GLY GLY A . n A 1 57 ASP 57 893 893 ASP ASP A . n A 1 58 GLU 58 894 894 GLU GLU A . n A 1 59 ILE 59 895 895 ILE ILE A . n A 1 60 LEU 60 896 896 LEU LEU A . n A 1 61 GLU 61 897 897 GLU GLU A . n A 1 62 ILE 62 898 898 ILE ILE A . n A 1 63 ASN 63 899 899 ASN ASN A . n A 1 64 ASN 64 900 900 ASN ASN A . n A 1 65 ARG 65 901 901 ARG ARG A . n A 1 66 ALA 66 902 902 ALA ALA A . n A 1 67 ALA 67 903 903 ALA ALA A . n A 1 68 ASP 68 904 904 ASP ASP A . n A 1 69 ALA 69 905 905 ALA ALA A . n A 1 70 LEU 70 906 906 LEU LEU A . n A 1 71 ASN 71 907 907 ASN ASN A . n A 1 72 SER 72 908 908 SER SER A . n A 1 73 SER 73 909 909 SER SER A . n A 1 74 MET 74 910 910 MET MET A . n A 1 75 LEU 75 911 911 LEU LEU A . n A 1 76 LYS 76 912 912 LYS LYS A . n A 1 77 ASP 77 913 913 ASP ASP A . n A 1 78 PHE 78 914 914 PHE PHE A . n A 1 79 LEU 79 915 915 LEU LEU A . n A 1 80 SER 80 916 916 SER SER A . n A 1 81 GLN 81 917 917 GLN GLN A . n A 1 82 PRO 82 918 918 PRO PRO A . n A 1 83 SER 83 919 919 SER SER A . n A 1 84 LEU 84 920 920 LEU LEU A . n A 1 85 GLY 85 921 921 GLY GLY A . n A 1 86 LEU 86 922 922 LEU LEU A . n A 1 87 LEU 87 923 923 LEU LEU A . n A 1 88 VAL 88 924 924 VAL VAL A . n A 1 89 ARG 89 925 925 ARG ARG A . n A 1 90 THR 90 926 926 THR THR A . n A 1 91 TYR 91 927 927 TYR TYR A . n A 1 92 PRO 92 928 928 PRO PRO A . n A 1 93 GLU 93 929 929 GLU GLU A . n A 1 94 LEU 94 930 930 LEU LEU A . n B 2 1 THR 1 1 1 THR THR B . n B 2 2 LYS 2 2 2 LYS LYS B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 GLU 4 4 4 GLU GLU B . n B 2 5 GLU 5 5 5 GLU GLU B . n B 2 6 PHE 6 6 6 PHE PHE B . n B 2 7 PTR 7 7 7 PTR PTR B . n B 2 8 ALA 8 8 8 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 1001 1 CL CL A . D 4 ANS 1 101 100 ANS ANS B . E 3 CL 1 102 1 CL CL B . F 5 NA 1 103 1 NA NA B . G 6 HOH 1 1101 1 HOH HOH A . G 6 HOH 2 1102 2 HOH HOH A . G 6 HOH 3 1103 3 HOH HOH A . G 6 HOH 4 1104 4 HOH HOH A . G 6 HOH 5 1105 5 HOH HOH A . G 6 HOH 6 1106 7 HOH HOH A . G 6 HOH 7 1107 9 HOH HOH A . G 6 HOH 8 1108 10 HOH HOH A . G 6 HOH 9 1109 11 HOH HOH A . G 6 HOH 10 1110 12 HOH HOH A . G 6 HOH 11 1111 13 HOH HOH A . G 6 HOH 12 1112 14 HOH HOH A . G 6 HOH 13 1113 15 HOH HOH A . G 6 HOH 14 1114 16 HOH HOH A . G 6 HOH 15 1115 17 HOH HOH A . G 6 HOH 16 1116 18 HOH HOH A . G 6 HOH 17 1117 19 HOH HOH A . G 6 HOH 18 1118 20 HOH HOH A . G 6 HOH 19 1119 21 HOH HOH A . G 6 HOH 20 1120 22 HOH HOH A . G 6 HOH 21 1121 23 HOH HOH A . G 6 HOH 22 1122 24 HOH HOH A . G 6 HOH 23 1123 25 HOH HOH A . G 6 HOH 24 1124 26 HOH HOH A . G 6 HOH 25 1125 27 HOH HOH A . G 6 HOH 26 1126 28 HOH HOH A . G 6 HOH 27 1127 29 HOH HOH A . G 6 HOH 28 1128 30 HOH HOH A . G 6 HOH 29 1129 31 HOH HOH A . G 6 HOH 30 1130 32 HOH HOH A . G 6 HOH 31 1131 33 HOH HOH A . G 6 HOH 32 1132 34 HOH HOH A . G 6 HOH 33 1133 35 HOH HOH A . G 6 HOH 34 1134 36 HOH HOH A . G 6 HOH 35 1135 37 HOH HOH A . G 6 HOH 36 1136 40 HOH HOH A . G 6 HOH 37 1137 41 HOH HOH A . G 6 HOH 38 1138 42 HOH HOH A . G 6 HOH 39 1139 43 HOH HOH A . G 6 HOH 40 1140 44 HOH HOH A . G 6 HOH 41 1141 45 HOH HOH A . G 6 HOH 42 1142 46 HOH HOH A . G 6 HOH 43 1143 47 HOH HOH A . G 6 HOH 44 1144 48 HOH HOH A . G 6 HOH 45 1145 49 HOH HOH A . G 6 HOH 46 1146 50 HOH HOH A . G 6 HOH 47 1147 51 HOH HOH A . G 6 HOH 48 1148 53 HOH HOH A . G 6 HOH 49 1149 54 HOH HOH A . G 6 HOH 50 1150 55 HOH HOH A . G 6 HOH 51 1151 57 HOH HOH A . G 6 HOH 52 1152 59 HOH HOH A . G 6 HOH 53 1153 60 HOH HOH A . G 6 HOH 54 1154 61 HOH HOH A . G 6 HOH 55 1155 62 HOH HOH A . G 6 HOH 56 1156 63 HOH HOH A . G 6 HOH 57 1157 64 HOH HOH A . G 6 HOH 58 1158 65 HOH HOH A . G 6 HOH 59 1159 67 HOH HOH A . G 6 HOH 60 1160 68 HOH HOH A . G 6 HOH 61 1161 70 HOH HOH A . G 6 HOH 62 1162 72 HOH HOH A . G 6 HOH 63 1163 73 HOH HOH A . G 6 HOH 64 1164 74 HOH HOH A . G 6 HOH 65 1165 75 HOH HOH A . G 6 HOH 66 1166 76 HOH HOH A . G 6 HOH 67 1167 77 HOH HOH A . G 6 HOH 68 1168 79 HOH HOH A . G 6 HOH 69 1169 80 HOH HOH A . G 6 HOH 70 1170 82 HOH HOH A . G 6 HOH 71 1171 83 HOH HOH A . G 6 HOH 72 1172 84 HOH HOH A . G 6 HOH 73 1173 88 HOH HOH A . G 6 HOH 74 1174 93 HOH HOH A . G 6 HOH 75 1175 97 HOH HOH A . G 6 HOH 76 1176 98 HOH HOH A . G 6 HOH 77 1177 105 HOH HOH A . G 6 HOH 78 1178 106 HOH HOH A . G 6 HOH 79 1179 113 HOH HOH A . G 6 HOH 80 1180 114 HOH HOH A . G 6 HOH 81 1181 115 HOH HOH A . G 6 HOH 82 1182 116 HOH HOH A . G 6 HOH 83 1183 117 HOH HOH A . G 6 HOH 84 1184 118 HOH HOH A . G 6 HOH 85 1185 119 HOH HOH A . G 6 HOH 86 1186 120 HOH HOH A . G 6 HOH 87 1187 122 HOH HOH A . G 6 HOH 88 1188 123 HOH HOH A . G 6 HOH 89 1189 124 HOH HOH A . H 6 HOH 1 201 8 HOH HOH B . H 6 HOH 2 202 39 HOH HOH B . H 6 HOH 3 203 52 HOH HOH B . H 6 HOH 4 204 56 HOH HOH B . H 6 HOH 5 205 85 HOH HOH B . H 6 HOH 6 206 102 HOH HOH B . H 6 HOH 7 207 103 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1840 ? 1 MORE -32 ? 1 'SSA (A^2)' 6530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-13 2 'Structure model' 1 1 2015-05-27 3 'Structure model' 1 2 2023-09-13 4 'Structure model' 1 3 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_ref_seq_dif.details' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 20 4 'Structure model' '_chem_comp_atom.atom_id' 21 4 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal StructureStudio 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4GVC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Q844H IS A NATURAL VARIANT.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 838 ? ? -141.21 -148.07 2 1 GLU B 4 ? ? -178.35 -178.00 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ANS C1 C Y N 14 ANS C2 C Y N 15 ANS C3 C Y N 16 ANS C4 C Y N 17 ANS C4A C Y N 18 ANS C5 C Y N 19 ANS C6 C Y N 20 ANS C7 C Y N 21 ANS C8 C Y N 22 ANS C8A C Y N 23 ANS N N N N 24 ANS CM1 C N N 25 ANS CM2 C N N 26 ANS S S N N 27 ANS O1S O N N 28 ANS O2S O N N 29 ANS O3S O N N 30 ANS H2 H N N 31 ANS H3 H N N 32 ANS H4 H N N 33 ANS H6 H N N 34 ANS H7 H N N 35 ANS H8 H N N 36 ANS HM11 H N N 37 ANS HM12 H N N 38 ANS HM13 H N N 39 ANS HM21 H N N 40 ANS HM22 H N N 41 ANS HM23 H N N 42 ANS HOS3 H N N 43 ARG N N N N 44 ARG CA C N S 45 ARG C C N N 46 ARG O O N N 47 ARG CB C N N 48 ARG CG C N N 49 ARG CD C N N 50 ARG NE N N N 51 ARG CZ C N N 52 ARG NH1 N N N 53 ARG NH2 N N N 54 ARG OXT O N N 55 ARG H H N N 56 ARG H2 H N N 57 ARG HA H N N 58 ARG HB2 H N N 59 ARG HB3 H N N 60 ARG HG2 H N N 61 ARG HG3 H N N 62 ARG HD2 H N N 63 ARG HD3 H N N 64 ARG HE H N N 65 ARG HH11 H N N 66 ARG HH12 H N N 67 ARG HH21 H N N 68 ARG HH22 H N N 69 ARG HXT H N N 70 ASN N N N N 71 ASN CA C N S 72 ASN C C N N 73 ASN O O N N 74 ASN CB C N N 75 ASN CG C N N 76 ASN OD1 O N N 77 ASN ND2 N N N 78 ASN OXT O N N 79 ASN H H N N 80 ASN H2 H N N 81 ASN HA H N N 82 ASN HB2 H N N 83 ASN HB3 H N N 84 ASN HD21 H N N 85 ASN HD22 H N N 86 ASN HXT H N N 87 ASP N N N N 88 ASP CA C N S 89 ASP C C N N 90 ASP O O N N 91 ASP CB C N N 92 ASP CG C N N 93 ASP OD1 O N N 94 ASP OD2 O N N 95 ASP OXT O N N 96 ASP H H N N 97 ASP H2 H N N 98 ASP HA H N N 99 ASP HB2 H N N 100 ASP HB3 H N N 101 ASP HD2 H N N 102 ASP HXT H N N 103 CL CL CL N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 NA NA NA N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PRO N N N N 291 PRO CA C N S 292 PRO C C N N 293 PRO O O N N 294 PRO CB C N N 295 PRO CG C N N 296 PRO CD C N N 297 PRO OXT O N N 298 PRO H H N N 299 PRO HA H N N 300 PRO HB2 H N N 301 PRO HB3 H N N 302 PRO HG2 H N N 303 PRO HG3 H N N 304 PRO HD2 H N N 305 PRO HD3 H N N 306 PRO HXT H N N 307 PTR N N N N 308 PTR CA C N S 309 PTR C C N N 310 PTR O O N N 311 PTR OXT O N N 312 PTR CB C N N 313 PTR CG C Y N 314 PTR CD1 C Y N 315 PTR CD2 C Y N 316 PTR CE1 C Y N 317 PTR CE2 C Y N 318 PTR CZ C Y N 319 PTR OH O N N 320 PTR P P N N 321 PTR O1P O N N 322 PTR O2P O N N 323 PTR O3P O N N 324 PTR H H N N 325 PTR H2 H N N 326 PTR HA H N N 327 PTR HXT H N N 328 PTR HB2 H N N 329 PTR HB3 H N N 330 PTR HD1 H N N 331 PTR HD2 H N N 332 PTR HE1 H N N 333 PTR HE2 H N N 334 PTR HO2P H N N 335 PTR HO3P H N N 336 SER N N N N 337 SER CA C N S 338 SER C C N N 339 SER O O N N 340 SER CB C N N 341 SER OG O N N 342 SER OXT O N N 343 SER H H N N 344 SER H2 H N N 345 SER HA H N N 346 SER HB2 H N N 347 SER HB3 H N N 348 SER HG H N N 349 SER HXT H N N 350 THR N N N N 351 THR CA C N S 352 THR C C N N 353 THR O O N N 354 THR CB C N R 355 THR OG1 O N N 356 THR CG2 C N N 357 THR OXT O N N 358 THR H H N N 359 THR H2 H N N 360 THR HA H N N 361 THR HB H N N 362 THR HG1 H N N 363 THR HG21 H N N 364 THR HG22 H N N 365 THR HG23 H N N 366 THR HXT H N N 367 TYR N N N N 368 TYR CA C N S 369 TYR C C N N 370 TYR O O N N 371 TYR CB C N N 372 TYR CG C Y N 373 TYR CD1 C Y N 374 TYR CD2 C Y N 375 TYR CE1 C Y N 376 TYR CE2 C Y N 377 TYR CZ C Y N 378 TYR OH O N N 379 TYR OXT O N N 380 TYR H H N N 381 TYR H2 H N N 382 TYR HA H N N 383 TYR HB2 H N N 384 TYR HB3 H N N 385 TYR HD1 H N N 386 TYR HD2 H N N 387 TYR HE1 H N N 388 TYR HE2 H N N 389 TYR HH H N N 390 TYR HXT H N N 391 VAL N N N N 392 VAL CA C N S 393 VAL C C N N 394 VAL O O N N 395 VAL CB C N N 396 VAL CG1 C N N 397 VAL CG2 C N N 398 VAL OXT O N N 399 VAL H H N N 400 VAL H2 H N N 401 VAL HA H N N 402 VAL HB H N N 403 VAL HG11 H N N 404 VAL HG12 H N N 405 VAL HG13 H N N 406 VAL HG21 H N N 407 VAL HG22 H N N 408 VAL HG23 H N N 409 VAL HXT H N N 410 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ANS C1 C2 doub Y N 13 ANS C1 C8A sing Y N 14 ANS C1 S sing N N 15 ANS C2 C3 sing Y N 16 ANS C2 H2 sing N N 17 ANS C3 C4 doub Y N 18 ANS C3 H3 sing N N 19 ANS C4 C4A sing Y N 20 ANS C4 H4 sing N N 21 ANS C4A C5 doub Y N 22 ANS C4A C8A sing Y N 23 ANS C5 C6 sing Y N 24 ANS C5 N sing N N 25 ANS C6 C7 doub Y N 26 ANS C6 H6 sing N N 27 ANS C7 C8 sing Y N 28 ANS C7 H7 sing N N 29 ANS C8 C8A doub Y N 30 ANS C8 H8 sing N N 31 ANS N CM1 sing N N 32 ANS N CM2 sing N N 33 ANS CM1 HM11 sing N N 34 ANS CM1 HM12 sing N N 35 ANS CM1 HM13 sing N N 36 ANS CM2 HM21 sing N N 37 ANS CM2 HM22 sing N N 38 ANS CM2 HM23 sing N N 39 ANS S O1S doub N N 40 ANS S O2S doub N N 41 ANS S O3S sing N N 42 ANS O3S HOS3 sing N N 43 ARG N CA sing N N 44 ARG N H sing N N 45 ARG N H2 sing N N 46 ARG CA C sing N N 47 ARG CA CB sing N N 48 ARG CA HA sing N N 49 ARG C O doub N N 50 ARG C OXT sing N N 51 ARG CB CG sing N N 52 ARG CB HB2 sing N N 53 ARG CB HB3 sing N N 54 ARG CG CD sing N N 55 ARG CG HG2 sing N N 56 ARG CG HG3 sing N N 57 ARG CD NE sing N N 58 ARG CD HD2 sing N N 59 ARG CD HD3 sing N N 60 ARG NE CZ sing N N 61 ARG NE HE sing N N 62 ARG CZ NH1 sing N N 63 ARG CZ NH2 doub N N 64 ARG NH1 HH11 sing N N 65 ARG NH1 HH12 sing N N 66 ARG NH2 HH21 sing N N 67 ARG NH2 HH22 sing N N 68 ARG OXT HXT sing N N 69 ASN N CA sing N N 70 ASN N H sing N N 71 ASN N H2 sing N N 72 ASN CA C sing N N 73 ASN CA CB sing N N 74 ASN CA HA sing N N 75 ASN C O doub N N 76 ASN C OXT sing N N 77 ASN CB CG sing N N 78 ASN CB HB2 sing N N 79 ASN CB HB3 sing N N 80 ASN CG OD1 doub N N 81 ASN CG ND2 sing N N 82 ASN ND2 HD21 sing N N 83 ASN ND2 HD22 sing N N 84 ASN OXT HXT sing N N 85 ASP N CA sing N N 86 ASP N H sing N N 87 ASP N H2 sing N N 88 ASP CA C sing N N 89 ASP CA CB sing N N 90 ASP CA HA sing N N 91 ASP C O doub N N 92 ASP C OXT sing N N 93 ASP CB CG sing N N 94 ASP CB HB2 sing N N 95 ASP CB HB3 sing N N 96 ASP CG OD1 doub N N 97 ASP CG OD2 sing N N 98 ASP OD2 HD2 sing N N 99 ASP OXT HXT sing N N 100 GLN N CA sing N N 101 GLN N H sing N N 102 GLN N H2 sing N N 103 GLN CA C sing N N 104 GLN CA CB sing N N 105 GLN CA HA sing N N 106 GLN C O doub N N 107 GLN C OXT sing N N 108 GLN CB CG sing N N 109 GLN CB HB2 sing N N 110 GLN CB HB3 sing N N 111 GLN CG CD sing N N 112 GLN CG HG2 sing N N 113 GLN CG HG3 sing N N 114 GLN CD OE1 doub N N 115 GLN CD NE2 sing N N 116 GLN NE2 HE21 sing N N 117 GLN NE2 HE22 sing N N 118 GLN OXT HXT sing N N 119 GLU N CA sing N N 120 GLU N H sing N N 121 GLU N H2 sing N N 122 GLU CA C sing N N 123 GLU CA CB sing N N 124 GLU CA HA sing N N 125 GLU C O doub N N 126 GLU C OXT sing N N 127 GLU CB CG sing N N 128 GLU CB HB2 sing N N 129 GLU CB HB3 sing N N 130 GLU CG CD sing N N 131 GLU CG HG2 sing N N 132 GLU CG HG3 sing N N 133 GLU CD OE1 doub N N 134 GLU CD OE2 sing N N 135 GLU OE2 HE2 sing N N 136 GLU OXT HXT sing N N 137 GLY N CA sing N N 138 GLY N H sing N N 139 GLY N H2 sing N N 140 GLY CA C sing N N 141 GLY CA HA2 sing N N 142 GLY CA HA3 sing N N 143 GLY C O doub N N 144 GLY C OXT sing N N 145 GLY OXT HXT sing N N 146 HIS N CA sing N N 147 HIS N H sing N N 148 HIS N H2 sing N N 149 HIS CA C sing N N 150 HIS CA CB sing N N 151 HIS CA HA sing N N 152 HIS C O doub N N 153 HIS C OXT sing N N 154 HIS CB CG sing N N 155 HIS CB HB2 sing N N 156 HIS CB HB3 sing N N 157 HIS CG ND1 sing Y N 158 HIS CG CD2 doub Y N 159 HIS ND1 CE1 doub Y N 160 HIS ND1 HD1 sing N N 161 HIS CD2 NE2 sing Y N 162 HIS CD2 HD2 sing N N 163 HIS CE1 NE2 sing Y N 164 HIS CE1 HE1 sing N N 165 HIS NE2 HE2 sing N N 166 HIS OXT HXT sing N N 167 HOH O H1 sing N N 168 HOH O H2 sing N N 169 ILE N CA sing N N 170 ILE N H sing N N 171 ILE N H2 sing N N 172 ILE CA C sing N N 173 ILE CA CB sing N N 174 ILE CA HA sing N N 175 ILE C O doub N N 176 ILE C OXT sing N N 177 ILE CB CG1 sing N N 178 ILE CB CG2 sing N N 179 ILE CB HB sing N N 180 ILE CG1 CD1 sing N N 181 ILE CG1 HG12 sing N N 182 ILE CG1 HG13 sing N N 183 ILE CG2 HG21 sing N N 184 ILE CG2 HG22 sing N N 185 ILE CG2 HG23 sing N N 186 ILE CD1 HD11 sing N N 187 ILE CD1 HD12 sing N N 188 ILE CD1 HD13 sing N N 189 ILE OXT HXT sing N N 190 LEU N CA sing N N 191 LEU N H sing N N 192 LEU N H2 sing N N 193 LEU CA C sing N N 194 LEU CA CB sing N N 195 LEU CA HA sing N N 196 LEU C O doub N N 197 LEU C OXT sing N N 198 LEU CB CG sing N N 199 LEU CB HB2 sing N N 200 LEU CB HB3 sing N N 201 LEU CG CD1 sing N N 202 LEU CG CD2 sing N N 203 LEU CG HG sing N N 204 LEU CD1 HD11 sing N N 205 LEU CD1 HD12 sing N N 206 LEU CD1 HD13 sing N N 207 LEU CD2 HD21 sing N N 208 LEU CD2 HD22 sing N N 209 LEU CD2 HD23 sing N N 210 LEU OXT HXT sing N N 211 LYS N CA sing N N 212 LYS N H sing N N 213 LYS N H2 sing N N 214 LYS CA C sing N N 215 LYS CA CB sing N N 216 LYS CA HA sing N N 217 LYS C O doub N N 218 LYS C OXT sing N N 219 LYS CB CG sing N N 220 LYS CB HB2 sing N N 221 LYS CB HB3 sing N N 222 LYS CG CD sing N N 223 LYS CG HG2 sing N N 224 LYS CG HG3 sing N N 225 LYS CD CE sing N N 226 LYS CD HD2 sing N N 227 LYS CD HD3 sing N N 228 LYS CE NZ sing N N 229 LYS CE HE2 sing N N 230 LYS CE HE3 sing N N 231 LYS NZ HZ1 sing N N 232 LYS NZ HZ2 sing N N 233 LYS NZ HZ3 sing N N 234 LYS OXT HXT sing N N 235 MET N CA sing N N 236 MET N H sing N N 237 MET N H2 sing N N 238 MET CA C sing N N 239 MET CA CB sing N N 240 MET CA HA sing N N 241 MET C O doub N N 242 MET C OXT sing N N 243 MET CB CG sing N N 244 MET CB HB2 sing N N 245 MET CB HB3 sing N N 246 MET CG SD sing N N 247 MET CG HG2 sing N N 248 MET CG HG3 sing N N 249 MET SD CE sing N N 250 MET CE HE1 sing N N 251 MET CE HE2 sing N N 252 MET CE HE3 sing N N 253 MET OXT HXT sing N N 254 PHE N CA sing N N 255 PHE N H sing N N 256 PHE N H2 sing N N 257 PHE CA C sing N N 258 PHE CA CB sing N N 259 PHE CA HA sing N N 260 PHE C O doub N N 261 PHE C OXT sing N N 262 PHE CB CG sing N N 263 PHE CB HB2 sing N N 264 PHE CB HB3 sing N N 265 PHE CG CD1 doub Y N 266 PHE CG CD2 sing Y N 267 PHE CD1 CE1 sing Y N 268 PHE CD1 HD1 sing N N 269 PHE CD2 CE2 doub Y N 270 PHE CD2 HD2 sing N N 271 PHE CE1 CZ doub Y N 272 PHE CE1 HE1 sing N N 273 PHE CE2 CZ sing Y N 274 PHE CE2 HE2 sing N N 275 PHE CZ HZ sing N N 276 PHE OXT HXT sing N N 277 PRO N CA sing N N 278 PRO N CD sing N N 279 PRO N H sing N N 280 PRO CA C sing N N 281 PRO CA CB sing N N 282 PRO CA HA sing N N 283 PRO C O doub N N 284 PRO C OXT sing N N 285 PRO CB CG sing N N 286 PRO CB HB2 sing N N 287 PRO CB HB3 sing N N 288 PRO CG CD sing N N 289 PRO CG HG2 sing N N 290 PRO CG HG3 sing N N 291 PRO CD HD2 sing N N 292 PRO CD HD3 sing N N 293 PRO OXT HXT sing N N 294 PTR N CA sing N N 295 PTR N H sing N N 296 PTR N H2 sing N N 297 PTR CA C sing N N 298 PTR CA CB sing N N 299 PTR CA HA sing N N 300 PTR C O doub N N 301 PTR C OXT sing N N 302 PTR OXT HXT sing N N 303 PTR CB CG sing N N 304 PTR CB HB2 sing N N 305 PTR CB HB3 sing N N 306 PTR CG CD1 doub Y N 307 PTR CG CD2 sing Y N 308 PTR CD1 CE1 sing Y N 309 PTR CD1 HD1 sing N N 310 PTR CD2 CE2 doub Y N 311 PTR CD2 HD2 sing N N 312 PTR CE1 CZ doub Y N 313 PTR CE1 HE1 sing N N 314 PTR CE2 CZ sing Y N 315 PTR CE2 HE2 sing N N 316 PTR CZ OH sing N N 317 PTR OH P sing N N 318 PTR P O1P doub N N 319 PTR P O2P sing N N 320 PTR P O3P sing N N 321 PTR O2P HO2P sing N N 322 PTR O3P HO3P sing N N 323 SER N CA sing N N 324 SER N H sing N N 325 SER N H2 sing N N 326 SER CA C sing N N 327 SER CA CB sing N N 328 SER CA HA sing N N 329 SER C O doub N N 330 SER C OXT sing N N 331 SER CB OG sing N N 332 SER CB HB2 sing N N 333 SER CB HB3 sing N N 334 SER OG HG sing N N 335 SER OXT HXT sing N N 336 THR N CA sing N N 337 THR N H sing N N 338 THR N H2 sing N N 339 THR CA C sing N N 340 THR CA CB sing N N 341 THR CA HA sing N N 342 THR C O doub N N 343 THR C OXT sing N N 344 THR CB OG1 sing N N 345 THR CB CG2 sing N N 346 THR CB HB sing N N 347 THR OG1 HG1 sing N N 348 THR CG2 HG21 sing N N 349 THR CG2 HG22 sing N N 350 THR CG2 HG23 sing N N 351 THR OXT HXT sing N N 352 TYR N CA sing N N 353 TYR N H sing N N 354 TYR N H2 sing N N 355 TYR CA C sing N N 356 TYR CA CB sing N N 357 TYR CA HA sing N N 358 TYR C O doub N N 359 TYR C OXT sing N N 360 TYR CB CG sing N N 361 TYR CB HB2 sing N N 362 TYR CB HB3 sing N N 363 TYR CG CD1 doub Y N 364 TYR CG CD2 sing Y N 365 TYR CD1 CE1 sing Y N 366 TYR CD1 HD1 sing N N 367 TYR CD2 CE2 doub Y N 368 TYR CD2 HD2 sing N N 369 TYR CE1 CZ doub Y N 370 TYR CE1 HE1 sing N N 371 TYR CE2 CZ sing Y N 372 TYR CE2 HE2 sing N N 373 TYR CZ OH sing N N 374 TYR OH HH sing N N 375 TYR OXT HXT sing N N 376 VAL N CA sing N N 377 VAL N H sing N N 378 VAL N H2 sing N N 379 VAL CA C sing N N 380 VAL CA CB sing N N 381 VAL CA HA sing N N 382 VAL C O doub N N 383 VAL C OXT sing N N 384 VAL CB CG1 sing N N 385 VAL CB CG2 sing N N 386 VAL CB HB sing N N 387 VAL CG1 HG11 sing N N 388 VAL CG1 HG12 sing N N 389 VAL CG1 HG13 sing N N 390 VAL CG2 HG21 sing N N 391 VAL CG2 HG22 sing N N 392 VAL CG2 HG23 sing N N 393 VAL OXT HXT sing N N 394 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 '5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)' ANS 5 'SODIUM ION' NA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3KZD _pdbx_initial_refinement_model.details 'PDB ENTRY 3KZD' #