HEADER LIPID TRANSPORT 04-SEP-12 4GXG TITLE CRYSTAL STRUCTURE OF HUMAN GLTP BOUND WITH 12:0 MONOSULFATIDE TITLE 2 (ORTHORHOMBIC FORM; FOUR SUBUNITS IN ASYMMETRIC UNIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A, B, D, E; COMPND 4 SYNONYM: GLTP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLTP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLTP-FOLD, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR V.R.SAMYGINA,A.CABO-BILBAO,F.GONI-DE-CERIO,A.N.POPOV,L.MALININA REVDAT 2 20-MAR-24 4GXG 1 REMARK REVDAT 1 10-APR-13 4GXG 0 JRNL AUTH V.R.SAMYGINA,B.OCHOA-LIZARRALDE,A.N.POPOV,A.CABO-BILBAO, JRNL AUTH 2 F.GONI-DE-CERIO,J.G.MOLOTKOVSKY,D.J.PATEL,R.E.BROWN, JRNL AUTH 3 L.MALININA JRNL TITL STRUCTURAL INSIGHTS INTO LIPID-DEPENDENT REVERSIBLE JRNL TITL 2 DIMERIZATION OF HUMAN GLTP. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 603 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519669 JRNL DOI 10.1107/S0907444913000024 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 35215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.532 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7082 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9541 ; 1.524 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 826 ; 6.257 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;35.254 ;24.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1253 ;18.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1057 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5136 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3581 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4883 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4291 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6750 ; 1.137 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3179 ; 1.647 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2791 ; 2.576 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9754 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG3350, PH7.0-7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.60250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.93800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.32700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.93800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.60250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.32700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LEU D 3 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 808 O HOH E 863 2.11 REMARK 500 O HOH E 828 O HOH E 845 2.16 REMARK 500 O HOH D 834 O HOH D 838 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 174 CB GLU A 174 CG 0.149 REMARK 500 GLU A 174 CB GLU A 174 CG 0.128 REMARK 500 GLU B 174 CB GLU B 174 CG 0.161 REMARK 500 GLU D 174 CB GLU D 174 CG 0.143 REMARK 500 GLU E 174 CB GLU E 174 CG 0.251 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU E 174 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 109.94 73.71 REMARK 500 ASN A 63 80.65 -161.91 REMARK 500 ARG A 116 152.74 177.79 REMARK 500 ALA A 154 -3.69 72.32 REMARK 500 LYS A 167 -88.44 -24.63 REMARK 500 PRO B 32 8.32 -62.77 REMARK 500 ASN B 63 81.67 -171.46 REMARK 500 PHE B 67 53.08 -116.98 REMARK 500 LYS B 167 -110.54 51.28 REMARK 500 THR D 62 4.37 -66.87 REMARK 500 ASN D 63 80.18 155.56 REMARK 500 ALA D 154 0.86 122.73 REMARK 500 GLN D 169 95.18 -65.17 REMARK 500 ASN D 170 -120.82 -128.47 REMARK 500 THR D 172 159.54 75.48 REMARK 500 ALA E 5 2.79 -69.03 REMARK 500 ASN E 63 77.93 -159.25 REMARK 500 LEU E 136 -32.79 -133.24 REMARK 500 ALA E 154 -11.47 77.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 154 ALA D 155 148.63 REMARK 500 LYS D 167 GLY D 168 140.77 REMARK 500 GLY D 168 GLN D 169 -120.55 REMARK 500 VAL D 171 THR D 172 143.75 REMARK 500 ALA E 2 LEU E 3 48.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EIS E 700 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIS A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIS B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIS D 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIS E 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GJQ RELATED DB: PDB REMARK 900 RELATED ID: 4GXD RELATED DB: PDB DBREF 4GXG A 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 DBREF 4GXG B 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 DBREF 4GXG D 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 DBREF 4GXG E 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 SEQRES 1 A 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 A 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 A 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 A 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 A 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 A 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 A 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 A 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 A 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 A 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 A 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 A 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 A 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 A 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 A 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 A 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 A 209 VAL SEQRES 1 B 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 B 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 B 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 B 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 B 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 B 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 B 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 B 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 B 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 B 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 B 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 B 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 B 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 B 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 B 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 B 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 B 209 VAL SEQRES 1 D 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 D 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 D 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 D 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 D 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 D 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 D 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 D 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 D 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 D 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 D 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 D 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 D 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 D 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 D 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 D 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 D 209 VAL SEQRES 1 E 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 E 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 E 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 E 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 E 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 E 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 E 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 E 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 E 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 E 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 E 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 E 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 E 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 E 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 E 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 E 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 E 209 VAL HET EIS A 700 49 HET EIS B 700 49 HET EIS D 700 49 HET EIS E 700 45 HETNAM EIS N-{(2S,3R,4E)-3-HYDROXY-1-[(3-O-SULFO-BETA-D- HETNAM 2 EIS GALACTOPYRANOSYL)OXY]OCTADEC-4-EN-2-YL}DODECANAMIDE FORMUL 5 EIS 4(C36 H69 N O11 S) FORMUL 9 HOH *245(H2 O) HELIX 1 1 LEU A 3 HIS A 7 5 5 HELIX 2 2 GLU A 19 SER A 28 1 10 HELIX 3 3 HIS A 29 GLY A 38 5 10 HELIX 4 4 SER A 39 VAL A 41 5 3 HELIX 5 5 PHE A 42 ASN A 63 1 22 HELIX 6 6 THR A 69 GLY A 82 1 14 HELIX 7 7 ALA A 83 TRP A 85 5 3 HELIX 8 8 VAL A 88 GLY A 114 1 27 HELIX 9 9 ILE A 124 LEU A 136 1 13 HELIX 10 10 LYS A 137 HIS A 140 5 4 HELIX 11 11 GLY A 141 TYR A 153 1 13 HELIX 12 12 TYR A 157 SER A 166 1 10 HELIX 13 13 THR A 172 MET A 201 1 30 HELIX 14 14 GLU B 19 SER B 28 1 10 HELIX 15 15 HIS B 29 GLY B 38 5 10 HELIX 16 16 SER B 39 VAL B 41 5 3 HELIX 17 17 PHE B 42 ASN B 63 1 22 HELIX 18 18 THR B 69 GLY B 82 1 14 HELIX 19 19 VAL B 88 ASP B 113 1 26 HELIX 20 20 ILE B 124 LEU B 136 1 13 HELIX 21 21 LYS B 137 HIS B 140 5 4 HELIX 22 22 GLY B 141 LEU B 152 1 12 HELIX 23 23 TYR B 153 ALA B 155 5 3 HELIX 24 24 TYR B 157 LYS B 167 1 11 HELIX 25 25 THR B 172 MET B 201 1 30 HELIX 26 26 GLU D 19 SER D 28 1 10 HELIX 27 27 HIS D 29 GLY D 38 5 10 HELIX 28 28 SER D 39 VAL D 41 5 3 HELIX 29 29 PHE D 42 THR D 62 1 21 HELIX 30 30 THR D 69 GLY D 82 1 14 HELIX 31 31 VAL D 88 ASP D 113 1 26 HELIX 32 32 ILE D 124 LEU D 136 1 13 HELIX 33 33 LYS D 137 HIS D 140 5 4 HELIX 34 34 GLY D 141 TYR D 153 1 13 HELIX 35 35 TYR D 157 LYS D 167 1 11 HELIX 36 36 THR D 172 MET D 201 1 30 HELIX 37 37 GLU E 19 SER E 28 1 10 HELIX 38 38 HIS E 29 GLY E 38 5 10 HELIX 39 39 SER E 39 VAL E 41 5 3 HELIX 40 40 PHE E 42 ASN E 63 1 22 HELIX 41 41 THR E 69 GLY E 82 1 14 HELIX 42 42 VAL E 88 ASP E 113 1 26 HELIX 43 43 ILE E 124 LEU E 136 1 13 HELIX 44 44 LYS E 137 HIS E 140 5 4 HELIX 45 45 GLY E 141 LEU E 152 1 12 HELIX 46 46 TYR E 157 SER E 166 1 10 HELIX 47 47 THR E 172 MET E 201 1 30 CISPEP 1 TRP A 85 PRO A 86 0 6.46 CISPEP 2 TRP B 85 PRO B 86 0 1.23 CISPEP 3 TRP D 85 PRO D 86 0 -0.42 CISPEP 4 TRP E 85 PRO E 86 0 9.60 SITE 1 AC1 18 ILE A 45 ASP A 48 ASN A 52 LYS A 55 SITE 2 AC1 18 LEU A 92 ALA A 93 TRP A 96 PHE A 103 SITE 3 AC1 18 LEU A 136 HIS A 140 ILE A 147 PHE A 148 SITE 4 AC1 18 TYR A 207 HOH A 882 VAL B 41 TYR B 132 SITE 5 AC1 18 PHE B 148 EIS B 700 SITE 1 AC2 19 VAL A 41 PRO A 44 HIS A 140 PHE A 148 SITE 2 AC2 19 EIS A 700 PHE B 42 ILE B 45 ASP B 48 SITE 3 AC2 19 GLY B 51 ASN B 52 LYS B 55 LEU B 92 SITE 4 AC2 19 ALA B 93 TRP B 96 PHE B 103 LEU B 136 SITE 5 AC2 19 HIS B 140 TYR B 207 VAL B 209 SITE 1 AC3 18 PHE D 42 ILE D 45 ASP D 48 ILE D 49 SITE 2 AC3 18 ASN D 52 LYS D 55 ALA D 93 TRP D 96 SITE 3 AC3 18 PHE D 103 LEU D 136 HIS D 140 PHE D 148 SITE 4 AC3 18 TYR D 207 VAL E 41 PRO E 44 PHE E 148 SITE 5 AC3 18 ALA E 151 EIS E 700 SITE 1 AC4 18 VAL D 41 ILE D 45 PHE D 148 EIS D 700 SITE 2 AC4 18 ILE E 45 ASP E 48 GLY E 51 ASN E 52 SITE 3 AC4 18 LYS E 55 LEU E 92 ALA E 93 TRP E 96 SITE 4 AC4 18 PHE E 103 LEU E 136 HIS E 140 TYR E 207 SITE 5 AC4 18 HOH E 852 HOH E 854 CRYST1 65.205 84.654 171.876 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005818 0.00000