data_4GXL # _entry.id 4GXL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GXL pdb_00004gxl 10.2210/pdb4gxl/pdb RCSB RCSB074759 ? ? WWPDB D_1000074759 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 2 'Structure model' software 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4GXL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-09-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, S.' 1 'Wandel, M.P.' 2 'Li, F.' 3 'Liu, Z.' 4 'He, C.' 5 'Wu, J.' 6 'Shi, Y.' 7 'Randow, F.' 8 # _citation.id primary _citation.title ;Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy ; _citation.journal_abbrev Sci.Signal. _citation.journal_volume 6 _citation.page_first ra9 _citation.page_last ra9 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1937-9145 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23386746 _citation.pdbx_database_id_DOI 10.1126/scisignal.2003730 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, S.' 1 ? primary 'Wandel, M.P.' 2 ? primary 'Li, F.' 3 ? primary 'Liu, Z.' 4 ? primary 'He, C.' 5 ? primary 'Wu, J.' 6 ? primary 'Shi, Y.' 7 ? primary 'Randow, F.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-8 17532.883 1 ? ? 'UNP residues 186-317' ? 2 polymer syn 'Peptide from Calcium-binding and coiled-coil domain-containing protein 2' 1508.615 1 ? ? 'UNP residues 368-381' ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 119 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Gal-8, Po66 carbohydrate-binding protein, Po66-CBP, Prostate carcinoma tumor antigen 1, PCTA-1' 2 'Antigen nuclear dot 52 kDa protein, Nuclear domain 10 protein NDP52, Nuclear domain 10 protein 52, Nuclear dot protein 52' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSSGENLYFQHMPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSF LQESWGEEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; ;MGSSHHHHHHSSGENLYFQHMPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSF LQESWGEEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; A ? 2 'polypeptide(L)' no no ARQNPGLAYGNPYS ARQNPGLAYGNPYS B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 GLU n 1 15 ASN n 1 16 LEU n 1 17 TYR n 1 18 PHE n 1 19 GLN n 1 20 HIS n 1 21 MET n 1 22 PRO n 1 23 PHE n 1 24 ALA n 1 25 ALA n 1 26 ARG n 1 27 LEU n 1 28 ASN n 1 29 THR n 1 30 PRO n 1 31 MET n 1 32 GLY n 1 33 PRO n 1 34 GLY n 1 35 ARG n 1 36 THR n 1 37 VAL n 1 38 VAL n 1 39 VAL n 1 40 LYS n 1 41 GLY n 1 42 GLU n 1 43 VAL n 1 44 ASN n 1 45 ALA n 1 46 ASN n 1 47 ALA n 1 48 LYS n 1 49 SER n 1 50 PHE n 1 51 ASN n 1 52 VAL n 1 53 ASP n 1 54 LEU n 1 55 LEU n 1 56 ALA n 1 57 GLY n 1 58 LYS n 1 59 SER n 1 60 LYS n 1 61 ASP n 1 62 ILE n 1 63 ALA n 1 64 LEU n 1 65 HIS n 1 66 LEU n 1 67 ASN n 1 68 PRO n 1 69 ARG n 1 70 LEU n 1 71 ASN n 1 72 ILE n 1 73 LYS n 1 74 ALA n 1 75 PHE n 1 76 VAL n 1 77 ARG n 1 78 ASN n 1 79 SER n 1 80 PHE n 1 81 LEU n 1 82 GLN n 1 83 GLU n 1 84 SER n 1 85 TRP n 1 86 GLY n 1 87 GLU n 1 88 GLU n 1 89 GLU n 1 90 ARG n 1 91 ASN n 1 92 ILE n 1 93 THR n 1 94 SER n 1 95 PHE n 1 96 PRO n 1 97 PHE n 1 98 SER n 1 99 PRO n 1 100 GLY n 1 101 MET n 1 102 TYR n 1 103 PHE n 1 104 GLU n 1 105 MET n 1 106 ILE n 1 107 ILE n 1 108 TYR n 1 109 CYS n 1 110 ASP n 1 111 VAL n 1 112 ARG n 1 113 GLU n 1 114 PHE n 1 115 LYS n 1 116 VAL n 1 117 ALA n 1 118 VAL n 1 119 ASN n 1 120 GLY n 1 121 VAL n 1 122 HIS n 1 123 SER n 1 124 LEU n 1 125 GLU n 1 126 TYR n 1 127 LYS n 1 128 HIS n 1 129 ARG n 1 130 PHE n 1 131 LYS n 1 132 GLU n 1 133 LEU n 1 134 SER n 1 135 SER n 1 136 ILE n 1 137 ASP n 1 138 THR n 1 139 LEU n 1 140 GLU n 1 141 ILE n 1 142 ASN n 1 143 GLY n 1 144 ASP n 1 145 ILE n 1 146 HIS n 1 147 LEU n 1 148 LEU n 1 149 GLU n 1 150 VAL n 1 151 ARG n 1 152 SER n 1 153 TRP n 2 1 ALA n 2 2 ARG n 2 3 GLN n 2 4 ASN n 2 5 PRO n 2 6 GLY n 2 7 LEU n 2 8 ALA n 2 9 TYR n 2 10 GLY n 2 11 ASN n 2 12 PRO n 2 13 TYR n 2 14 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 207 ? ? ? A . n A 1 2 GLY 2 208 ? ? ? A . n A 1 3 SER 3 209 ? ? ? A . n A 1 4 SER 4 210 ? ? ? A . n A 1 5 HIS 5 211 ? ? ? A . n A 1 6 HIS 6 212 ? ? ? A . n A 1 7 HIS 7 213 ? ? ? A . n A 1 8 HIS 8 214 ? ? ? A . n A 1 9 HIS 9 215 ? ? ? A . n A 1 10 HIS 10 216 ? ? ? A . n A 1 11 SER 11 217 217 SER SER A . n A 1 12 SER 12 218 218 SER SER A . n A 1 13 GLY 13 219 219 GLY GLY A . n A 1 14 GLU 14 220 220 GLU GLU A . n A 1 15 ASN 15 221 221 ASN ASN A . n A 1 16 LEU 16 222 222 LEU LEU A . n A 1 17 TYR 17 223 223 TYR TYR A . n A 1 18 PHE 18 224 224 PHE PHE A . n A 1 19 GLN 19 225 225 GLN GLN A . n A 1 20 HIS 20 226 226 HIS HIS A . n A 1 21 MET 21 227 227 MET MET A . n A 1 22 PRO 22 228 228 PRO PRO A . n A 1 23 PHE 23 229 229 PHE PHE A . n A 1 24 ALA 24 230 230 ALA ALA A . n A 1 25 ALA 25 231 231 ALA ALA A . n A 1 26 ARG 26 232 232 ARG ARG A . n A 1 27 LEU 27 233 233 LEU LEU A . n A 1 28 ASN 28 234 234 ASN ASN A . n A 1 29 THR 29 235 235 THR THR A . n A 1 30 PRO 30 236 236 PRO PRO A . n A 1 31 MET 31 237 237 MET MET A . n A 1 32 GLY 32 238 238 GLY GLY A . n A 1 33 PRO 33 239 239 PRO PRO A . n A 1 34 GLY 34 240 240 GLY GLY A . n A 1 35 ARG 35 241 241 ARG ARG A . n A 1 36 THR 36 242 242 THR THR A . n A 1 37 VAL 37 243 243 VAL VAL A . n A 1 38 VAL 38 244 244 VAL VAL A . n A 1 39 VAL 39 245 245 VAL VAL A . n A 1 40 LYS 40 246 246 LYS LYS A . n A 1 41 GLY 41 247 247 GLY GLY A . n A 1 42 GLU 42 248 248 GLU GLU A . n A 1 43 VAL 43 249 249 VAL VAL A . n A 1 44 ASN 44 250 250 ASN ASN A . n A 1 45 ALA 45 251 251 ALA ALA A . n A 1 46 ASN 46 252 252 ASN ASN A . n A 1 47 ALA 47 253 253 ALA ALA A . n A 1 48 LYS 48 254 254 LYS LYS A . n A 1 49 SER 49 255 255 SER SER A . n A 1 50 PHE 50 256 256 PHE PHE A . n A 1 51 ASN 51 257 257 ASN ASN A . n A 1 52 VAL 52 258 258 VAL VAL A . n A 1 53 ASP 53 259 259 ASP ASP A . n A 1 54 LEU 54 260 260 LEU LEU A . n A 1 55 LEU 55 261 261 LEU LEU A . n A 1 56 ALA 56 262 262 ALA ALA A . n A 1 57 GLY 57 263 263 GLY GLY A . n A 1 58 LYS 58 264 264 LYS LYS A . n A 1 59 SER 59 265 265 SER SER A . n A 1 60 LYS 60 266 266 LYS LYS A . n A 1 61 ASP 61 267 267 ASP ASP A . n A 1 62 ILE 62 268 268 ILE ILE A . n A 1 63 ALA 63 269 269 ALA ALA A . n A 1 64 LEU 64 270 270 LEU LEU A . n A 1 65 HIS 65 271 271 HIS HIS A . n A 1 66 LEU 66 272 272 LEU LEU A . n A 1 67 ASN 67 273 273 ASN ASN A . n A 1 68 PRO 68 274 274 PRO PRO A . n A 1 69 ARG 69 275 275 ARG ARG A . n A 1 70 LEU 70 276 276 LEU LEU A . n A 1 71 ASN 71 277 277 ASN ASN A . n A 1 72 ILE 72 278 278 ILE ILE A . n A 1 73 LYS 73 279 279 LYS LYS A . n A 1 74 ALA 74 280 280 ALA ALA A . n A 1 75 PHE 75 281 281 PHE PHE A . n A 1 76 VAL 76 282 282 VAL VAL A . n A 1 77 ARG 77 283 283 ARG ARG A . n A 1 78 ASN 78 284 284 ASN ASN A . n A 1 79 SER 79 285 285 SER SER A . n A 1 80 PHE 80 286 286 PHE PHE A . n A 1 81 LEU 81 287 287 LEU LEU A . n A 1 82 GLN 82 288 288 GLN GLN A . n A 1 83 GLU 83 289 289 GLU GLU A . n A 1 84 SER 84 290 290 SER SER A . n A 1 85 TRP 85 291 291 TRP TRP A . n A 1 86 GLY 86 292 292 GLY GLY A . n A 1 87 GLU 87 293 293 GLU GLU A . n A 1 88 GLU 88 294 294 GLU GLU A . n A 1 89 GLU 89 295 295 GLU GLU A . n A 1 90 ARG 90 296 296 ARG ARG A . n A 1 91 ASN 91 297 297 ASN ASN A . n A 1 92 ILE 92 298 298 ILE ILE A . n A 1 93 THR 93 299 299 THR THR A . n A 1 94 SER 94 300 300 SER SER A . n A 1 95 PHE 95 301 301 PHE PHE A . n A 1 96 PRO 96 302 302 PRO PRO A . n A 1 97 PHE 97 303 303 PHE PHE A . n A 1 98 SER 98 304 304 SER SER A . n A 1 99 PRO 99 305 305 PRO PRO A . n A 1 100 GLY 100 306 306 GLY GLY A . n A 1 101 MET 101 307 307 MET MET A . n A 1 102 TYR 102 308 308 TYR TYR A . n A 1 103 PHE 103 309 309 PHE PHE A . n A 1 104 GLU 104 310 310 GLU GLU A . n A 1 105 MET 105 311 311 MET MET A . n A 1 106 ILE 106 312 312 ILE ILE A . n A 1 107 ILE 107 313 313 ILE ILE A . n A 1 108 TYR 108 314 314 TYR TYR A . n A 1 109 CYS 109 315 315 CYS CYS A . n A 1 110 ASP 110 316 316 ASP ASP A . n A 1 111 VAL 111 317 317 VAL VAL A . n A 1 112 ARG 112 318 318 ARG ARG A . n A 1 113 GLU 113 319 319 GLU GLU A . n A 1 114 PHE 114 320 320 PHE PHE A . n A 1 115 LYS 115 321 321 LYS LYS A . n A 1 116 VAL 116 322 322 VAL VAL A . n A 1 117 ALA 117 323 323 ALA ALA A . n A 1 118 VAL 118 324 324 VAL VAL A . n A 1 119 ASN 119 325 325 ASN ASN A . n A 1 120 GLY 120 326 326 GLY GLY A . n A 1 121 VAL 121 327 327 VAL VAL A . n A 1 122 HIS 122 328 328 HIS HIS A . n A 1 123 SER 123 329 329 SER SER A . n A 1 124 LEU 124 330 330 LEU LEU A . n A 1 125 GLU 125 331 331 GLU GLU A . n A 1 126 TYR 126 332 332 TYR TYR A . n A 1 127 LYS 127 333 333 LYS LYS A . n A 1 128 HIS 128 334 334 HIS HIS A . n A 1 129 ARG 129 335 335 ARG ARG A . n A 1 130 PHE 130 336 336 PHE PHE A . n A 1 131 LYS 131 337 337 LYS LYS A . n A 1 132 GLU 132 338 338 GLU GLU A . n A 1 133 LEU 133 339 339 LEU LEU A . n A 1 134 SER 134 340 340 SER SER A . n A 1 135 SER 135 341 341 SER SER A . n A 1 136 ILE 136 342 342 ILE ILE A . n A 1 137 ASP 137 343 343 ASP ASP A . n A 1 138 THR 138 344 344 THR THR A . n A 1 139 LEU 139 345 345 LEU LEU A . n A 1 140 GLU 140 346 346 GLU GLU A . n A 1 141 ILE 141 347 347 ILE ILE A . n A 1 142 ASN 142 348 348 ASN ASN A . n A 1 143 GLY 143 349 349 GLY GLY A . n A 1 144 ASP 144 350 350 ASP ASP A . n A 1 145 ILE 145 351 351 ILE ILE A . n A 1 146 HIS 146 352 352 HIS HIS A . n A 1 147 LEU 147 353 353 LEU LEU A . n A 1 148 LEU 148 354 354 LEU LEU A . n A 1 149 GLU 149 355 355 GLU GLU A . n A 1 150 VAL 150 356 356 VAL VAL A . n A 1 151 ARG 151 357 357 ARG ARG A . n A 1 152 SER 152 358 358 SER SER A . n A 1 153 TRP 153 359 359 TRP TRP A . n B 2 1 ALA 1 368 ? ? ? B . n B 2 2 ARG 2 369 ? ? ? B . n B 2 3 GLN 3 370 ? ? ? B . n B 2 4 ASN 4 371 371 ASN ASN B . n B 2 5 PRO 5 372 372 PRO PRO B . n B 2 6 GLY 6 373 373 GLY GLY B . n B 2 7 LEU 7 374 374 LEU LEU B . n B 2 8 ALA 8 375 375 ALA ALA B . n B 2 9 TYR 9 376 376 TYR TYR B . n B 2 10 GLY 10 377 377 GLY GLY B . n B 2 11 ASN 11 378 378 ASN ASN B . n B 2 12 PRO 12 379 379 PRO PRO B . n B 2 13 TYR 13 380 380 TYR TYR B . n B 2 14 SER 14 381 381 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 401 1 GOL GOL A . D 3 GOL 1 402 1 GOL GOL A . E 4 HOH 1 501 1 HOH HOH A . E 4 HOH 2 502 2 HOH HOH A . E 4 HOH 3 503 3 HOH HOH A . E 4 HOH 4 504 4 HOH HOH A . E 4 HOH 5 505 5 HOH HOH A . E 4 HOH 6 506 6 HOH HOH A . E 4 HOH 7 507 7 HOH HOH A . E 4 HOH 8 508 8 HOH HOH A . E 4 HOH 9 509 9 HOH HOH A . E 4 HOH 10 510 11 HOH HOH A . E 4 HOH 11 511 12 HOH HOH A . E 4 HOH 12 512 13 HOH HOH A . E 4 HOH 13 513 14 HOH HOH A . E 4 HOH 14 514 15 HOH HOH A . E 4 HOH 15 515 16 HOH HOH A . E 4 HOH 16 516 17 HOH HOH A . E 4 HOH 17 517 18 HOH HOH A . E 4 HOH 18 518 19 HOH HOH A . E 4 HOH 19 519 20 HOH HOH A . E 4 HOH 20 520 21 HOH HOH A . E 4 HOH 21 521 22 HOH HOH A . E 4 HOH 22 522 23 HOH HOH A . E 4 HOH 23 523 24 HOH HOH A . E 4 HOH 24 524 25 HOH HOH A . E 4 HOH 25 525 26 HOH HOH A . E 4 HOH 26 526 28 HOH HOH A . E 4 HOH 27 527 29 HOH HOH A . E 4 HOH 28 528 30 HOH HOH A . E 4 HOH 29 529 31 HOH HOH A . E 4 HOH 30 530 32 HOH HOH A . E 4 HOH 31 531 34 HOH HOH A . E 4 HOH 32 532 35 HOH HOH A . E 4 HOH 33 533 36 HOH HOH A . E 4 HOH 34 534 39 HOH HOH A . E 4 HOH 35 535 40 HOH HOH A . E 4 HOH 36 536 41 HOH HOH A . E 4 HOH 37 537 42 HOH HOH A . E 4 HOH 38 538 43 HOH HOH A . E 4 HOH 39 539 44 HOH HOH A . E 4 HOH 40 540 45 HOH HOH A . E 4 HOH 41 541 46 HOH HOH A . E 4 HOH 42 542 48 HOH HOH A . E 4 HOH 43 543 49 HOH HOH A . E 4 HOH 44 544 51 HOH HOH A . E 4 HOH 45 545 53 HOH HOH A . E 4 HOH 46 546 54 HOH HOH A . E 4 HOH 47 547 55 HOH HOH A . E 4 HOH 48 548 57 HOH HOH A . E 4 HOH 49 549 58 HOH HOH A . E 4 HOH 50 550 60 HOH HOH A . E 4 HOH 51 551 61 HOH HOH A . E 4 HOH 52 552 62 HOH HOH A . E 4 HOH 53 553 63 HOH HOH A . E 4 HOH 54 554 65 HOH HOH A . E 4 HOH 55 555 66 HOH HOH A . E 4 HOH 56 556 67 HOH HOH A . E 4 HOH 57 557 68 HOH HOH A . E 4 HOH 58 558 69 HOH HOH A . E 4 HOH 59 559 70 HOH HOH A . E 4 HOH 60 560 71 HOH HOH A . E 4 HOH 61 561 72 HOH HOH A . E 4 HOH 62 562 74 HOH HOH A . E 4 HOH 63 563 75 HOH HOH A . E 4 HOH 64 564 77 HOH HOH A . E 4 HOH 65 565 78 HOH HOH A . E 4 HOH 66 566 79 HOH HOH A . E 4 HOH 67 567 83 HOH HOH A . E 4 HOH 68 568 84 HOH HOH A . E 4 HOH 69 569 85 HOH HOH A . E 4 HOH 70 570 86 HOH HOH A . E 4 HOH 71 571 89 HOH HOH A . E 4 HOH 72 572 91 HOH HOH A . E 4 HOH 73 573 93 HOH HOH A . E 4 HOH 74 574 94 HOH HOH A . E 4 HOH 75 575 95 HOH HOH A . E 4 HOH 76 576 96 HOH HOH A . E 4 HOH 77 577 98 HOH HOH A . E 4 HOH 78 578 99 HOH HOH A . E 4 HOH 79 579 102 HOH HOH A . E 4 HOH 80 580 103 HOH HOH A . E 4 HOH 81 581 104 HOH HOH A . E 4 HOH 82 582 105 HOH HOH A . E 4 HOH 83 583 106 HOH HOH A . E 4 HOH 84 584 107 HOH HOH A . E 4 HOH 85 585 108 HOH HOH A . E 4 HOH 86 586 109 HOH HOH A . E 4 HOH 87 587 110 HOH HOH A . E 4 HOH 88 588 111 HOH HOH A . E 4 HOH 89 589 112 HOH HOH A . E 4 HOH 90 590 113 HOH HOH A . E 4 HOH 91 591 114 HOH HOH A . E 4 HOH 92 592 117 HOH HOH A . E 4 HOH 93 593 118 HOH HOH A . E 4 HOH 94 594 122 HOH HOH A . E 4 HOH 95 595 123 HOH HOH A . E 4 HOH 96 596 126 HOH HOH A . E 4 HOH 97 597 127 HOH HOH A . E 4 HOH 98 598 130 HOH HOH A . E 4 HOH 99 599 131 HOH HOH A . E 4 HOH 100 600 132 HOH HOH A . E 4 HOH 101 601 134 HOH HOH A . E 4 HOH 102 602 138 HOH HOH A . E 4 HOH 103 603 141 HOH HOH A . E 4 HOH 104 604 143 HOH HOH A . E 4 HOH 105 605 145 HOH HOH A . E 4 HOH 106 606 146 HOH HOH A . E 4 HOH 107 607 147 HOH HOH A . E 4 HOH 108 608 148 HOH HOH A . E 4 HOH 109 609 150 HOH HOH A . E 4 HOH 110 610 151 HOH HOH A . E 4 HOH 111 611 152 HOH HOH A . F 4 HOH 1 401 10 HOH HOH B . F 4 HOH 2 402 33 HOH HOH B . F 4 HOH 3 403 37 HOH HOH B . F 4 HOH 4 404 47 HOH HOH B . F 4 HOH 5 405 50 HOH HOH B . F 4 HOH 6 406 73 HOH HOH B . F 4 HOH 7 407 90 HOH HOH B . F 4 HOH 8 408 144 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASN 234 ? CG ? A ASN 28 CG 2 1 Y 0 A GLU 289 ? CD ? A GLU 83 CD 3 1 Y 0 A GLU 293 ? CD ? A GLU 87 CD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 PHENIX 1.7.3_928 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 DENZO . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 76.087 _cell.length_b 124.826 _cell.length_c 43.737 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4GXL _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.entry_id 4GXL _symmetry.Int_Tables_number 21 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4GXL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.465 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 54.89 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2% PEG 400, 0.1M HEPES sodium pH 7.5, 2.0M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U # _reflns.entry_id 4GXL _reflns.d_resolution_high 2.020 _reflns.d_resolution_low 50.000 _reflns.number_obs 13995 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.pdbx_chi_squared 1.051 _reflns.pdbx_redundancy 5.300 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 14009 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.020 2.050 ? ? ? ? 0.333 ? ? 1.090 4.800 ? ? ? 682 ? ? ? ? 100.000 ? ? 1 1 2.050 2.090 ? ? ? ? 0.293 ? ? 1.107 5.200 ? ? ? 689 ? ? ? ? 99.900 ? ? 2 1 2.090 2.130 ? ? ? ? 0.266 ? ? 1.086 5.300 ? ? ? 693 ? ? ? ? 100.000 ? ? 3 1 2.130 2.180 ? ? ? ? 0.210 ? ? 1.085 5.400 ? ? ? 695 ? ? ? ? 100.000 ? ? 4 1 2.180 2.220 ? ? ? ? 0.196 ? ? 1.036 5.300 ? ? ? 681 ? ? ? ? 100.000 ? ? 5 1 2.220 2.270 ? ? ? ? 0.177 ? ? 1.089 5.400 ? ? ? 693 ? ? ? ? 100.000 ? ? 6 1 2.270 2.330 ? ? ? ? 0.157 ? ? 1.061 5.300 ? ? ? 675 ? ? ? ? 100.000 ? ? 7 1 2.330 2.390 ? ? ? ? 0.162 ? ? 1.097 5.400 ? ? ? 693 ? ? ? ? 100.000 ? ? 8 1 2.390 2.470 ? ? ? ? 0.145 ? ? 1.038 5.400 ? ? ? 681 ? ? ? ? 100.000 ? ? 9 1 2.470 2.540 ? ? ? ? 0.133 ? ? 1.043 5.400 ? ? ? 709 ? ? ? ? 100.000 ? ? 10 1 2.540 2.640 ? ? ? ? 0.116 ? ? 1.059 5.300 ? ? ? 686 ? ? ? ? 100.000 ? ? 11 1 2.640 2.740 ? ? ? ? 0.099 ? ? 1.043 5.400 ? ? ? 702 ? ? ? ? 100.000 ? ? 12 1 2.740 2.870 ? ? ? ? 0.086 ? ? 1.033 5.400 ? ? ? 686 ? ? ? ? 100.000 ? ? 13 1 2.870 3.020 ? ? ? ? 0.075 ? ? 1.056 5.300 ? ? ? 710 ? ? ? ? 100.000 ? ? 14 1 3.020 3.210 ? ? ? ? 0.063 ? ? 1.028 5.300 ? ? ? 695 ? ? ? ? 100.000 ? ? 15 1 3.210 3.450 ? ? ? ? 0.056 ? ? 1.021 5.300 ? ? ? 708 ? ? ? ? 99.900 ? ? 16 1 3.450 3.800 ? ? ? ? 0.068 ? ? 0.999 5.200 ? ? ? 708 ? ? ? ? 99.900 ? ? 17 1 3.800 4.350 ? ? ? ? 0.077 ? ? 1.049 5.200 ? ? ? 717 ? ? ? ? 99.900 ? ? 18 1 4.350 5.480 ? ? ? ? 0.061 ? ? 1.065 5.000 ? ? ? 722 ? ? ? ? 99.600 ? ? 19 1 5.480 50.000 ? ? ? ? 0.043 ? ? 0.936 4.800 ? ? ? 770 ? ? ? ? 99.000 ? ? 20 1 # _refine.entry_id 4GXL _refine.ls_d_res_high 2.0230 _refine.ls_d_res_low 35.8180 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7600 _refine.ls_number_reflns_obs 13992 _refine.ls_number_reflns_all 14009 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1786 _refine.ls_R_factor_R_work 0.1767 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2161 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 701 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.8292 _refine.solvent_model_param_bsol 30.8440 _refine.solvent_model_param_ksol 0.3640 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0630 _refine.aniso_B[2][2] -0.4398 _refine.aniso_B[3][3] 0.3768 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.3000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.1100 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8796 _refine.B_iso_max 66.320 _refine.B_iso_min 10.030 _refine.pdbx_overall_phase_error 18.4200 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1233 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1364 _refine_hist.d_res_high 2.0230 _refine_hist.d_res_low 35.8180 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1287 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1740 1.257 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 182 0.092 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 227 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 475 12.730 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.0232 2.1794 5 99.0000 2602 . 0.1708 0.2152 . 142 . 2744 . 'X-RAY DIFFRACTION' . 2.1794 2.3986 5 100.0000 2586 . 0.1635 0.2123 . 155 . 2741 . 'X-RAY DIFFRACTION' . 2.3986 2.7456 5 100.0000 2642 . 0.1702 0.2059 . 142 . 2784 . 'X-RAY DIFFRACTION' . 2.7456 3.4587 5 100.0000 2680 . 0.1694 0.2112 . 123 . 2803 . 'X-RAY DIFFRACTION' . 3.4587 35.8234 5 100.0000 2781 . 0.1894 0.2245 . 139 . 2920 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4GXL _struct.title 'The crystal structure of Galectin-8 C-CRD in complex with NDP52' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GXL _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'protein-protein interaction, carbohydrate recognition, NDP52, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP LEG8_HUMAN O00214 1 ;PFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNITSFPFSPGM YFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; 186 ? 2 UNP CACO2_HUMAN Q13137 2 ARQNPGLAYGNPYS 368 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GXL A 22 ? 153 ? O00214 186 ? 317 ? 228 359 2 2 4GXL B 1 ? 14 ? Q13137 368 ? 381 ? 368 381 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GXL MET A 1 ? UNP O00214 ? ? 'expression tag' 207 1 1 4GXL GLY A 2 ? UNP O00214 ? ? 'expression tag' 208 2 1 4GXL SER A 3 ? UNP O00214 ? ? 'expression tag' 209 3 1 4GXL SER A 4 ? UNP O00214 ? ? 'expression tag' 210 4 1 4GXL HIS A 5 ? UNP O00214 ? ? 'expression tag' 211 5 1 4GXL HIS A 6 ? UNP O00214 ? ? 'expression tag' 212 6 1 4GXL HIS A 7 ? UNP O00214 ? ? 'expression tag' 213 7 1 4GXL HIS A 8 ? UNP O00214 ? ? 'expression tag' 214 8 1 4GXL HIS A 9 ? UNP O00214 ? ? 'expression tag' 215 9 1 4GXL HIS A 10 ? UNP O00214 ? ? 'expression tag' 216 10 1 4GXL SER A 11 ? UNP O00214 ? ? 'expression tag' 217 11 1 4GXL SER A 12 ? UNP O00214 ? ? 'expression tag' 218 12 1 4GXL GLY A 13 ? UNP O00214 ? ? 'expression tag' 219 13 1 4GXL GLU A 14 ? UNP O00214 ? ? 'expression tag' 220 14 1 4GXL ASN A 15 ? UNP O00214 ? ? 'expression tag' 221 15 1 4GXL LEU A 16 ? UNP O00214 ? ? 'expression tag' 222 16 1 4GXL TYR A 17 ? UNP O00214 ? ? 'expression tag' 223 17 1 4GXL PHE A 18 ? UNP O00214 ? ? 'expression tag' 224 18 1 4GXL GLN A 19 ? UNP O00214 ? ? 'expression tag' 225 19 1 4GXL HIS A 20 ? UNP O00214 ? ? 'expression tag' 226 20 1 4GXL MET A 21 ? UNP O00214 ? ? 'expression tag' 227 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -7 ? 1 'SSA (A^2)' 7860 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 132 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 136 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 338 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 342 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 21 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 227 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 22 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 228 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.64 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 23 ? ARG A 26 ? PHE A 229 ARG A 232 A 2 THR A 138 ? GLY A 143 ? THR A 344 GLY A 349 A 3 PHE A 50 ? ALA A 56 ? PHE A 256 ALA A 262 A 4 ASP A 61 ? ARG A 69 ? ASP A 267 ARG A 275 A 5 ALA A 74 ? LEU A 81 ? ALA A 280 LEU A 287 A 6 SER A 84 ? TRP A 85 ? SER A 290 TRP A 291 B 1 VAL A 121 ? LYS A 127 ? VAL A 327 LYS A 333 B 2 GLU A 113 ? VAL A 118 ? GLU A 319 VAL A 324 B 3 TYR A 102 ? CYS A 109 ? TYR A 308 CYS A 315 B 4 THR A 36 ? VAL A 43 ? THR A 242 VAL A 249 B 5 ILE A 145 ? TRP A 153 ? ILE A 351 TRP A 359 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 23 ? N PHE A 229 O ILE A 141 ? O ILE A 347 A 2 3 O GLU A 140 ? O GLU A 346 N ASP A 53 ? N ASP A 259 A 3 4 N LEU A 54 ? N LEU A 260 O LEU A 64 ? O LEU A 270 A 4 5 N ARG A 69 ? N ARG A 275 O ALA A 74 ? O ALA A 280 A 5 6 N LEU A 81 ? N LEU A 287 O SER A 84 ? O SER A 290 B 1 2 O SER A 123 ? O SER A 329 N VAL A 116 ? N VAL A 322 B 2 3 O LYS A 115 ? O LYS A 321 N TYR A 108 ? N TYR A 314 B 3 4 O ILE A 107 ? O ILE A 313 N VAL A 37 ? N VAL A 243 B 4 5 N VAL A 38 ? N VAL A 244 O ARG A 151 ? O ARG A 357 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 401 ? 8 'BINDING SITE FOR RESIDUE GOL A 401' AC2 Software A GOL 402 ? 7 'BINDING SITE FOR RESIDUE GOL A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HIS A 20 ? HIS A 226 . ? 1_555 ? 2 AC1 8 MET A 21 ? MET A 227 . ? 1_555 ? 3 AC1 8 ASN A 44 ? ASN A 250 . ? 1_555 ? 4 AC1 8 ASN A 44 ? ASN A 250 . ? 4_555 ? 5 AC1 8 ASN A 46 ? ASN A 252 . ? 4_555 ? 6 AC1 8 GLY A 143 ? GLY A 349 . ? 1_555 ? 7 AC1 8 ASP A 144 ? ASP A 350 . ? 4_555 ? 8 AC1 8 ILE A 145 ? ILE A 351 . ? 1_555 ? 9 AC2 7 HIS A 65 ? HIS A 271 . ? 1_555 ? 10 AC2 7 ASN A 67 ? ASN A 273 . ? 1_555 ? 11 AC2 7 ARG A 69 ? ARG A 275 . ? 1_555 ? 12 AC2 7 ASN A 78 ? ASN A 284 . ? 1_555 ? 13 AC2 7 TRP A 85 ? TRP A 291 . ? 1_555 ? 14 AC2 7 GLU A 88 ? GLU A 294 . ? 1_555 ? 15 AC2 7 HOH E . ? HOH A 584 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 509 ? E HOH . 2 1 A HOH 575 ? E HOH . 3 1 A HOH 581 ? E HOH . 4 1 A HOH 585 ? E HOH . # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 207 ? A MET 1 2 1 Y 1 A GLY 208 ? A GLY 2 3 1 Y 1 A SER 209 ? A SER 3 4 1 Y 1 A SER 210 ? A SER 4 5 1 Y 1 A HIS 211 ? A HIS 5 6 1 Y 1 A HIS 212 ? A HIS 6 7 1 Y 1 A HIS 213 ? A HIS 7 8 1 Y 1 A HIS 214 ? A HIS 8 9 1 Y 1 A HIS 215 ? A HIS 9 10 1 Y 1 A HIS 216 ? A HIS 10 11 1 Y 1 B ALA 368 ? B ALA 1 12 1 Y 1 B ARG 369 ? B ARG 2 13 1 Y 1 B GLN 370 ? B GLN 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _atom_sites.entry_id 4GXL _atom_sites.fract_transf_matrix[1][1] 0.013143 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022864 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_