HEADER HYDROLASE 05-SEP-12 4GY1 TITLE ROUND 18 ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE WITH BOUND TITLE 2 CACODYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.8.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA HYDROLASE, ARYLESTERASE, CARBOXYLATED LYSINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,N.TOKURIKI,D.S.TAWFIK REVDAT 1 21-AUG-13 4GY1 0 JRNL AUTH N.TOKURIKI,C.J.JACKSON,L.AFRIAT-JURNOU,K.T.WYGANOWSKI, JRNL AUTH 2 R.TANG,D.S.TAWFIK JRNL TITL DIMINISHING RETURNS AND TRADEOFFS CONSTRAIN THE LABORATORY JRNL TITL 2 OPTIMIZATION OF AN ENZYME JRNL REF NAT COMMUN V. 3 1257 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23212386 JRNL DOI 10.1038/NCOMMS2246 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 107280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6122 - 4.6584 0.98 3567 207 0.1850 0.2029 REMARK 3 2 4.6584 - 3.6984 1.00 3487 192 0.1554 0.1644 REMARK 3 3 3.6984 - 3.2311 1.00 3483 166 0.1785 0.1905 REMARK 3 4 3.2311 - 2.9358 1.00 3417 228 0.1859 0.2145 REMARK 3 5 2.9358 - 2.7254 1.00 3444 164 0.1839 0.2105 REMARK 3 6 2.7254 - 2.5648 1.00 3442 154 0.1906 0.2071 REMARK 3 7 2.5648 - 2.4364 1.00 3439 167 0.1881 0.1820 REMARK 3 8 2.4364 - 2.3303 1.00 3406 180 0.1817 0.2094 REMARK 3 9 2.3303 - 2.2406 1.00 3439 167 0.1921 0.2306 REMARK 3 10 2.2406 - 2.1633 1.00 3389 179 0.1981 0.2253 REMARK 3 11 2.1633 - 2.0957 1.00 3384 181 0.2000 0.2242 REMARK 3 12 2.0957 - 2.0358 1.00 3375 186 0.2011 0.2245 REMARK 3 13 2.0358 - 1.9822 1.00 3398 175 0.2046 0.2153 REMARK 3 14 1.9822 - 1.9338 1.00 3386 182 0.2089 0.2387 REMARK 3 15 1.9338 - 1.8899 1.00 3372 197 0.2145 0.2477 REMARK 3 16 1.8899 - 1.8496 1.00 3361 174 0.2035 0.2184 REMARK 3 17 1.8496 - 1.8126 1.00 3398 191 0.2099 0.2332 REMARK 3 18 1.8126 - 1.7784 1.00 3355 170 0.2059 0.2601 REMARK 3 19 1.7784 - 1.7467 1.00 3411 166 0.2104 0.2340 REMARK 3 20 1.7467 - 1.7171 1.00 3370 169 0.2177 0.2471 REMARK 3 21 1.7171 - 1.6894 1.00 3379 172 0.2178 0.2352 REMARK 3 22 1.6894 - 1.6634 1.00 3378 185 0.2196 0.2344 REMARK 3 23 1.6634 - 1.6389 1.00 3386 164 0.2298 0.2608 REMARK 3 24 1.6389 - 1.6158 1.00 3318 195 0.2274 0.2483 REMARK 3 25 1.6158 - 1.5940 1.00 3339 194 0.2258 0.2740 REMARK 3 26 1.5940 - 1.5733 1.00 3387 175 0.2355 0.2522 REMARK 3 27 1.5733 - 1.5536 1.00 3346 163 0.2500 0.2858 REMARK 3 28 1.5536 - 1.5349 1.00 3362 185 0.2613 0.2835 REMARK 3 29 1.5349 - 1.5170 1.00 3368 158 0.2556 0.2974 REMARK 3 30 1.5170 - 1.5000 0.99 3341 167 0.2676 0.2824 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 42.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93110 REMARK 3 B22 (A**2) : 4.89400 REMARK 3 B33 (A**2) : -3.96290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6927 REMARK 3 ANGLE : 1.128 9625 REMARK 3 CHIRALITY : 0.070 1138 REMARK 3 PLANARITY : 0.006 1275 REMARK 3 DIHEDRAL : 13.307 2656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 2% PEG 8K, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.11150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.11150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.50950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 SER A 365 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 ARG B 363 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 364 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 109 O HOH B 626 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -147.68 -147.40 REMARK 500 ARG A 108 123.46 -38.99 REMARK 500 THR A 128 -168.84 -114.13 REMARK 500 TRP A 131 -155.78 -91.87 REMARK 500 GLU A 159 -129.32 50.83 REMARK 500 ARG A 207 -136.02 -108.24 REMARK 500 SER A 258 131.08 -170.54 REMARK 500 LEU A 262 45.86 -100.02 REMARK 500 TYR A 309 -150.27 -129.60 REMARK 500 SER B 61 -148.49 -147.71 REMARK 500 TRP B 69 58.16 -151.38 REMARK 500 TRP B 131 -157.68 -94.41 REMARK 500 GLU B 159 -133.69 52.25 REMARK 500 GLN B 206 -148.18 -99.79 REMARK 500 ARG B 207 -111.20 -132.90 REMARK 500 TYR B 309 -151.58 -128.40 REMARK 500 THR B 361 -137.49 -106.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC A 404 O2 REMARK 620 2 HIS A 57 NE2 135.9 REMARK 620 3 ASP A 301 OD1 87.4 88.9 REMARK 620 4 HIS A 55 NE2 111.6 112.0 87.1 REMARK 620 5 KCX A 169 OQ2 90.7 88.7 174.3 98.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 57 NE2 REMARK 620 2 CAC B 404 O2 105.7 REMARK 620 3 ASP B 301 OD1 92.4 86.5 REMARK 620 4 HIS B 55 NE2 106.6 145.2 79.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 93.3 REMARK 620 3 CAC A 404 O1 98.4 83.4 REMARK 620 4 HIS A 230 NE2 113.2 97.2 148.3 REMARK 620 5 CAC A 404 O2 101.0 157.6 77.6 93.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 CAC A 404 O2 110.5 REMARK 620 3 ASP A 301 OD2 104.3 68.8 REMARK 620 4 HIS A 230 NE2 148.1 100.2 94.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 CAC B 404 O1 161.9 REMARK 620 3 HIS B 201 ND1 92.0 97.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 CAC B 404 O2 144.8 REMARK 620 3 HIS B 55 NE2 72.2 142.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E3T RELATED DB: PDB REMARK 900 RELATED ID: 4GY0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN IS GENBANK, AFL46607. DBREF 4GY1 A 33 365 PDB 4GY1 4GY1 33 365 DBREF 4GY1 B 33 365 PDB 4GY1 4GY1 33 365 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 B 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 B 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 B 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 B 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 B 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 B 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 B 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 B 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 B 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 B 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 B 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 B 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 B 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 B 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 B 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 B 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 B 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 B 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 B 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 B 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 B 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 B 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 B 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 B 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 B 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4GY1 KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 4GY1 KCX B 169 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 169 21 HET KCX B 169 21 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET CAC A 404 5 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET CAC B 404 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 6(ZN 2+) FORMUL 6 CAC 2(C2 H6 AS O2 1-) FORMUL 11 HOH *579(H2 O) HELIX 1 1 ILE A 46 GLY A 50 1 5 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 MET A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 GLY A 208 GLU A 219 1 12 HELIX 11 11 SER A 222 SER A 224 5 3 HELIX 12 12 HIS A 230 THR A 234 5 5 HELIX 13 13 ASP A 236 ALA A 245 1 10 HELIX 14 14 ASN A 265 GLY A 273 1 9 HELIX 15 15 SER A 276 GLN A 290 1 15 HELIX 16 16 TYR A 292 LYS A 294 5 3 HELIX 17 17 ASN A 312 ASN A 321 1 10 HELIX 18 18 ASP A 323 MET A 325 5 3 HELIX 19 19 ALA A 326 ARG A 331 1 6 HELIX 20 20 ARG A 331 LYS A 339 1 9 HELIX 21 21 PRO A 342 VAL A 351 1 10 HELIX 22 22 VAL A 351 SER A 359 1 9 HELIX 23 23 THR B 45 GLY B 50 1 6 HELIX 24 24 GLY B 64 TRP B 69 1 6 HELIX 25 25 PRO B 70 GLY B 74 5 5 HELIX 26 26 SER B 75 ALA B 93 1 19 HELIX 27 27 THR B 103 GLY B 107 5 5 HELIX 28 28 ASP B 109 ASP B 121 1 13 HELIX 29 29 PRO B 135 MET B 140 1 6 HELIX 30 30 SER B 142 TYR B 156 1 15 HELIX 31 31 THR B 177 GLY B 195 1 19 HELIX 32 32 GLY B 208 GLU B 219 1 12 HELIX 33 33 SER B 222 SER B 224 5 3 HELIX 34 34 HIS B 230 THR B 234 5 5 HELIX 35 35 ASP B 236 ARG B 246 1 11 HELIX 36 36 ASN B 265 GLY B 273 1 9 HELIX 37 37 SER B 276 GLN B 290 1 15 HELIX 38 38 GLY B 291 LYS B 294 5 4 HELIX 39 39 ASN B 312 ASN B 321 1 10 HELIX 40 40 ASP B 323 MET B 325 5 3 HELIX 41 41 ALA B 326 ARG B 331 1 6 HELIX 42 42 ARG B 331 LYS B 339 1 9 HELIX 43 43 PRO B 342 VAL B 351 1 10 HELIX 44 44 VAL B 351 SER B 359 1 9 SHEET 1 A 2 ARG A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 C 6 ALA A 127 VAL A 130 0 SHEET 2 C 6 ILE A 167 THR A 173 1 O KCX A 169 N THR A 128 SHEET 3 C 6 VAL A 198 ALA A 203 1 O ILE A 199 N ILE A 168 SHEET 4 C 6 VAL A 226 GLY A 229 1 O GLY A 229 N THR A 200 SHEET 5 C 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 C 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 D 2 ILE B 37 THR B 39 0 SHEET 2 D 2 GLY B 42 ILE B 44 -1 O ILE B 44 N ILE B 37 SHEET 1 E 3 THR B 52 GLU B 56 0 SHEET 2 E 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 E 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 F 6 ALA B 127 VAL B 130 0 SHEET 2 F 6 ILE B 167 ILE B 172 1 O KCX B 169 N THR B 128 SHEET 3 F 6 VAL B 198 THR B 202 1 O ILE B 199 N ILE B 168 SHEET 4 F 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 F 6 LEU B 249 LEU B 252 1 O LEU B 249 N VAL B 226 SHEET 6 F 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK C ILE A 168 N AKCX A 169 1555 1555 1.34 LINK C ILE A 168 N BKCX A 169 1555 1555 1.34 LINK C AKCX A 169 N AVAL A 170 1555 1555 1.21 LINK C BKCX A 169 N BVAL A 170 1555 1555 1.45 LINK C ILE B 168 N AKCX B 169 1555 1555 1.33 LINK C ILE B 168 N BKCX B 169 1555 1555 1.33 LINK C AKCX B 169 N VAL B 170 1555 1555 1.33 LINK C BKCX B 169 N VAL B 170 1555 1555 1.33 LINK ZN B ZN A 401 O2 CAC A 404 1555 1555 2.00 LINK NE2 HIS B 57 ZN B ZN B 401 1555 1555 2.04 LINK OQ1BKCX A 169 ZN B ZN A 402 1555 1555 2.05 LINK NE2 HIS A 57 ZN B ZN A 401 1555 1555 2.05 LINK ZN B ZN B 401 O2 CAC B 404 1555 1555 2.09 LINK NE2 HIS A 55 ZN A ZN A 403 1555 1555 2.11 LINK ND1BHIS A 201 ZN B ZN A 402 1555 1555 2.15 LINK OD1BASP B 301 ZN B ZN B 401 1555 1555 2.15 LINK NE2BHIS B 230 ZN B ZN B 402 1555 1555 2.16 LINK ZN A ZN A 403 O2 CAC A 404 1555 1555 2.16 LINK OD1BASP A 301 ZN B ZN A 401 1555 1555 2.17 LINK OD2AASP A 301 ZN A ZN A 403 1555 1555 2.17 LINK NE2BHIS B 55 ZN B ZN B 401 1555 1555 2.19 LINK ZN B ZN A 402 O1 CAC A 404 1555 1555 2.20 LINK NE2BHIS A 230 ZN B ZN A 402 1555 1555 2.22 LINK NE2AHIS A 230 ZN A ZN A 403 1555 1555 2.23 LINK NE2 HIS A 55 ZN B ZN A 401 1555 1555 2.23 LINK ZN B ZN B 402 O1 CAC B 404 1555 1555 2.24 LINK ZN B ZN A 402 O2 CAC A 404 1555 1555 2.28 LINK NE2AHIS B 230 ZN A ZN B 403 1555 1555 2.35 LINK ZN A ZN B 403 O2 CAC B 404 1555 1555 2.42 LINK OQ2BKCX A 169 ZN B ZN A 401 1555 1555 2.50 LINK ND1BHIS B 201 ZN B ZN B 402 1555 1555 2.53 LINK NE2AHIS B 55 ZN A ZN B 403 1555 1555 2.64 SITE 1 AC1 8 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 8 ZN A 402 ZN A 403 CAC A 404 HOH A 643 SITE 1 AC2 7 KCX A 169 HIS A 201 HIS A 230 ZN A 401 SITE 2 AC2 7 ZN A 403 CAC A 404 HOH A 643 SITE 1 AC3 8 HIS A 55 KCX A 169 HIS A 230 ASP A 301 SITE 2 AC3 8 ZN A 401 ZN A 402 CAC A 404 HOH A 643 SITE 1 AC4 13 HIS A 55 HIS A 57 LEU A 106 TRP A 131 SITE 2 AC4 13 KCX A 169 HIS A 201 HIS A 230 PHE A 271 SITE 3 AC4 13 ASP A 301 ZN A 401 ZN A 402 ZN A 403 SITE 4 AC4 13 HOH A 643 SITE 1 AC5 6 HIS B 55 HIS B 57 KCX B 169 ASP B 301 SITE 2 AC5 6 ZN B 402 CAC B 404 SITE 1 AC6 6 KCX B 169 HIS B 201 HIS B 230 ZN B 401 SITE 2 AC6 6 ZN B 403 CAC B 404 SITE 1 AC7 6 HIS B 55 KCX B 169 HIS B 230 ASP B 301 SITE 2 AC7 6 ZN B 402 CAC B 404 SITE 1 AC8 10 HIS B 57 LEU B 106 TRP B 131 KCX B 169 SITE 2 AC8 10 HIS B 201 PHE B 271 ASP B 301 ZN B 401 SITE 3 AC8 10 ZN B 402 ZN B 403 CRYST1 86.223 87.019 88.939 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011244 0.00000