HEADER TOXIN/STRUCTURAL PROTEIN 05-SEP-12 4GY2 TITLE CRYSTAL STRUCTURE OF APO-IA-ACTIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IOTA TOXIN COMPONENT IA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.31; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ALPHA-ACTIN-1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 8 ORGANISM_COMMON: RABBIT; SOURCE 9 ORGANISM_TAXID: 9986; SOURCE 10 GENE: ACTA1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLTRANSFERASE, TOXIN-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.TSURUMURA,M.ODA,M.NAGAHAMA,H.TSUGE REVDAT 3 08-NOV-23 4GY2 1 REMARK SEQADV REVDAT 2 10-JUL-13 4GY2 1 JRNL REVDAT 1 20-FEB-13 4GY2 0 JRNL AUTH T.TSURUMURA,Y.TSUMORI,H.QIU,M.ODA,J.SAKURAI,M.NAGAHAMA, JRNL AUTH 2 H.TSUGE JRNL TITL ARGININE ADP-RIBOSYLATION MECHANISM BASED ON STRUCTURAL JRNL TITL 2 SNAPSHOTS OF IOTA-TOXIN AND ACTIN COMPLEX JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 4267 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23382240 JRNL DOI 10.1073/PNAS.1217227110 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.636 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.672 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6360 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8614 ; 1.900 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 6.996 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;37.881 ;25.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1143 ;22.069 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 944 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4776 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 37.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: PDB ENTRY 3BUZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 1500, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.13K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.22100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.97300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.93600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.97300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.22100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.93600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PHE A 2 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 HIS B 40 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 VAL B 43 REMARK 465 MET B 44 REMARK 465 VAL B 45 REMARK 465 GLY B 46 REMARK 465 MET B 47 REMARK 465 GLY B 48 REMARK 465 GLN B 49 REMARK 465 PHE B 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 20 OG1 THR A 177 2.08 REMARK 500 OH TYR A 311 O HOH A 752 2.10 REMARK 500 OG1 THR B 77 O HOH B 529 2.16 REMARK 500 O ALA A 203 O HOH A 789 2.17 REMARK 500 O LEU A 155 O HOH A 789 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 173 CG HIS B 173 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 335 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 335 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 1.35 -69.84 REMARK 500 LEU A 10 -119.22 32.30 REMARK 500 ASP A 45 30.88 -152.29 REMARK 500 ASN A 103 37.91 -91.72 REMARK 500 ASN A 163 0.24 82.62 REMARK 500 SER A 172 -81.93 55.43 REMARK 500 ASP A 182 46.88 -146.89 REMARK 500 TYR A 183 -169.11 -166.60 REMARK 500 LYS A 214 -119.15 47.51 REMARK 500 ASN A 266 72.88 -169.70 REMARK 500 LEU A 306 -16.09 -46.70 REMARK 500 LYS A 362 137.65 -37.95 REMARK 500 ASP A 363 4.68 82.06 REMARK 500 LEU A 369 -36.33 -33.99 REMARK 500 SER B 33 56.13 -92.82 REMARK 500 VAL B 35 -108.53 -126.65 REMARK 500 SER B 60 -110.37 -153.21 REMARK 500 ILE B 64 23.23 -75.68 REMARK 500 LEU B 65 54.66 -109.43 REMARK 500 ALA B 181 -159.61 -165.44 REMARK 500 ASN B 296 51.51 -152.80 REMARK 500 ARG B 335 -33.98 -36.97 REMARK 500 VAL B 370 -8.00 -58.19 REMARK 500 LYS B 373 72.38 102.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAR B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM REMARK 900 CLOSTRIDIUM PERFRINGENS WITH NADH REMARK 900 RELATED ID: 1GIR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM REMARK 900 CLOSTRIDIUM PERFRINGENS WITH NADPH REMARK 900 RELATED ID: 3BUZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IA-BTAD-ACTIN COMPLEX REMARK 900 RELATED ID: 4H03 RELATED DB: PDB REMARK 900 STRUCTURAL SNAPSHOTS OF ARGININE SPECIFIC ADP-RIBOSYLATION, NAD+-IA- REMARK 900 ACTIN REMARK 900 RELATED ID: 4H0T RELATED DB: PDB REMARK 900 STRUCTURAL SNAPSHOTS OF ARGININE SPECIFIC ADP-RIBOSYLATION, IA-ADPR- REMARK 900 ACTIN REMARK 900 RELATED ID: 4H0V RELATED DB: PDB REMARK 900 STRUCTURAL SNAPSHOTS OF ARGININE SPECIFIC ADP-RIBOSYLATION, NAD+- REMARK 900 IA(E378S)-ACTIN REMARK 900 RELATED ID: 4H0X RELATED DB: PDB REMARK 900 STRUCTURAL SNAPSHOTS OF ARGININE SPECIFIC ADP-RIBOSYLATION, NAD+- REMARK 900 IA(E380A)-ACTIN REMARK 900 RELATED ID: 4H0Y RELATED DB: PDB REMARK 900 STRUCTURAL SNAPSHOTS OF ARGININE SPECIFIC ADP-RIBOSYLATION, NAD+- REMARK 900 IA(E380S)-ACTIN DBREF 4GY2 A 1 413 UNP Q46220 Q46220_CLOPF 42 454 DBREF 4GY2 B 1 375 UNP P68135 ACTS_RABIT 3 377 SEQADV 4GY2 ARG A -4 UNP Q46220 EXPRESSION TAG SEQADV 4GY2 GLY A -3 UNP Q46220 EXPRESSION TAG SEQADV 4GY2 SER A -2 UNP Q46220 EXPRESSION TAG SEQADV 4GY2 HIS A -1 UNP Q46220 EXPRESSION TAG SEQADV 4GY2 MET A 0 UNP Q46220 EXPRESSION TAG SEQRES 1 A 418 ARG GLY SER HIS MET ALA PHE ILE GLU ARG PRO GLU ASP SEQRES 2 A 418 PHE LEU LYS ASP LYS GLU ASN ALA ILE GLN TRP GLU LYS SEQRES 3 A 418 LYS GLU ALA GLU ARG VAL GLU LYS ASN LEU ASP THR LEU SEQRES 4 A 418 GLU LYS GLU ALA LEU GLU LEU TYR LYS LYS ASP SER GLU SEQRES 5 A 418 GLN ILE SER ASN TYR SER GLN THR ARG GLN TYR PHE TYR SEQRES 6 A 418 ASP TYR GLN ILE GLU SER ASN PRO ARG GLU LYS GLU TYR SEQRES 7 A 418 LYS ASN LEU ARG ASN ALA ILE SER LYS ASN LYS ILE ASP SEQRES 8 A 418 LYS PRO ILE ASN VAL TYR TYR PHE GLU SER PRO GLU LYS SEQRES 9 A 418 PHE ALA PHE ASN LYS GLU ILE ARG THR GLU ASN GLN ASN SEQRES 10 A 418 GLU ILE SER LEU GLU LYS PHE ASN GLU LEU LYS GLU THR SEQRES 11 A 418 ILE GLN ASP LYS LEU PHE LYS GLN ASP GLY PHE LYS ASP SEQRES 12 A 418 VAL SER LEU TYR GLU PRO GLY ASN GLY ASP GLU LYS PRO SEQRES 13 A 418 THR PRO LEU LEU ILE HIS LEU LYS LEU PRO LYS ASN THR SEQRES 14 A 418 GLY MET LEU PRO TYR ILE ASN SER ASN ASP VAL LYS THR SEQRES 15 A 418 LEU ILE GLU GLN ASP TYR SER ILE LYS ILE ASP LYS ILE SEQRES 16 A 418 VAL ARG ILE VAL ILE GLU GLY LYS GLN TYR ILE LYS ALA SEQRES 17 A 418 GLU ALA SER ILE VAL ASN SER LEU ASP PHE LYS ASP ASP SEQRES 18 A 418 VAL SER LYS GLY ASP LEU TRP GLY LYS GLU ASN TYR SER SEQRES 19 A 418 ASP TRP SER ASN LYS LEU THR PRO ASN GLU LEU ALA ASP SEQRES 20 A 418 VAL ASN ASP TYR MET ARG GLY GLY TYR THR ALA ILE ASN SEQRES 21 A 418 ASN TYR LEU ILE SER ASN GLY PRO LEU ASN ASN PRO ASN SEQRES 22 A 418 PRO GLU LEU ASP SER LYS VAL ASN ASN ILE GLU ASN ALA SEQRES 23 A 418 LEU LYS LEU THR PRO ILE PRO SER ASN LEU ILE VAL TYR SEQRES 24 A 418 ARG ARG SER GLY PRO GLN GLU PHE GLY LEU THR LEU THR SEQRES 25 A 418 SER PRO GLU TYR ASP PHE ASN LYS ILE GLU ASN ILE ASP SEQRES 26 A 418 ALA PHE LYS GLU LYS TRP GLU GLY LYS VAL ILE THR TYR SEQRES 27 A 418 PRO ASN PHE ILE SER THR SER ILE GLY SER VAL ASN MET SEQRES 28 A 418 SER ALA PHE ALA LYS ARG LYS ILE ILE LEU ARG ILE ASN SEQRES 29 A 418 ILE PRO LYS ASP SER PRO GLY ALA TYR LEU SER ALA ILE SEQRES 30 A 418 PRO GLY TYR ALA GLY GLU TYR GLU VAL LEU LEU ASN HIS SEQRES 31 A 418 GLY SER LYS PHE LYS ILE ASN LYS VAL ASP SER TYR LYS SEQRES 32 A 418 ASP GLY THR VAL THR LYS LEU ILE LEU ASP ALA THR LEU SEQRES 33 A 418 ILE ASN SEQRES 1 B 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 B 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 B 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 B 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 B 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 B 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 B 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 B 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 B 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 B 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 B 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 B 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 B 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 B 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 B 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 B 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 B 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 B 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 B 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 B 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 B 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 B 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 B 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 B 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 B 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 B 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 B 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 B 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 B 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE HET PO4 A 600 5 HET CA B 401 1 HET ATP B 402 31 HET LAR B 403 29 HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM LAR LATRUNCULIN A HETSYN LAR 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16- HETSYN 2 LAR DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2- HETSYN 3 LAR THIAZOLIDINONE FORMUL 3 PO4 O4 P 3- FORMUL 4 CA CA 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 LAR C22 H31 N O5 S FORMUL 7 HOH *143(H2 O) HELIX 1 1 ASP A 12 GLU A 28 1 17 HELIX 2 2 LYS A 29 LEU A 31 5 3 HELIX 3 3 ASP A 32 ARG A 56 1 25 HELIX 4 4 GLN A 57 PHE A 59 5 3 HELIX 5 5 TYR A 60 SER A 66 1 7 HELIX 6 6 ARG A 69 LYS A 82 1 14 HELIX 7 7 SER A 96 ALA A 101 5 6 HELIX 8 8 SER A 115 GLN A 127 1 13 HELIX 9 9 ASP A 216 SER A 229 1 14 HELIX 10 10 TRP A 231 LEU A 235 5 5 HELIX 11 11 THR A 236 ARG A 248 1 13 HELIX 12 12 GLY A 250 SER A 260 1 11 HELIX 13 13 ASN A 261 ASN A 266 1 6 HELIX 14 14 ASN A 268 LEU A 282 1 15 HELIX 15 15 GLY A 298 GLY A 303 5 6 HELIX 16 16 SER A 308 ASP A 312 5 5 HELIX 17 17 LYS A 315 GLU A 327 1 13 HELIX 18 18 MET A 346 ALA A 350 5 5 HELIX 19 19 TYR A 368 ILE A 372 5 5 HELIX 20 20 VAL B 54 GLN B 59 5 6 HELIX 21 21 ASN B 78 TYR B 91 1 14 HELIX 22 22 ALA B 97 HIS B 101 5 5 HELIX 23 23 PRO B 112 THR B 126 1 15 HELIX 24 24 GLN B 137 SER B 145 1 9 HELIX 25 25 PRO B 172 ILE B 175 5 4 HELIX 26 26 ALA B 181 ARG B 196 1 16 HELIX 27 27 THR B 202 CYS B 217 1 16 HELIX 28 28 ASP B 222 SER B 233 1 12 HELIX 29 29 ASN B 252 THR B 260 1 9 HELIX 30 30 LEU B 261 PHE B 262 5 2 HELIX 31 31 GLN B 263 GLY B 268 5 6 HELIX 32 32 GLY B 273 LYS B 284 1 12 HELIX 33 33 ASP B 286 ASP B 288 5 3 HELIX 34 34 ILE B 289 ALA B 295 1 7 HELIX 35 35 GLY B 301 MET B 305 5 5 HELIX 36 36 GLY B 308 ALA B 321 1 14 HELIX 37 37 TYR B 337 LEU B 349 1 13 HELIX 38 38 SER B 350 TRP B 356 5 7 HELIX 39 39 LYS B 359 GLY B 366 1 8 HELIX 40 40 PRO B 367 HIS B 371 5 5 SHEET 1 A 5 ILE A 89 PHE A 94 0 SHEET 2 A 5 LEU A 154 LEU A 160 -1 O ILE A 156 N TYR A 93 SHEET 3 A 5 LYS A 198 VAL A 208 1 O ILE A 201 N LEU A 155 SHEET 4 A 5 ASP A 174 ILE A 195 -1 N SER A 184 O VAL A 208 SHEET 5 A 5 LEU A 130 VAL A 139 -1 N GLY A 135 O GLN A 181 SHEET 1 B 5 ILE A 89 PHE A 94 0 SHEET 2 B 5 LEU A 154 LEU A 160 -1 O ILE A 156 N TYR A 93 SHEET 3 B 5 LYS A 198 VAL A 208 1 O ILE A 201 N LEU A 155 SHEET 4 B 5 ASP A 174 ILE A 195 -1 N SER A 184 O VAL A 208 SHEET 5 B 5 LEU A 167 ASN A 171 -1 N LEU A 167 O LEU A 178 SHEET 1 C 5 LEU A 291 SER A 297 0 SHEET 2 C 5 ILE A 354 ILE A 360 -1 O ILE A 354 N SER A 297 SHEET 3 C 5 VAL A 402 LEU A 411 1 O LEU A 405 N ILE A 355 SHEET 4 C 5 LYS A 388 ASP A 399 -1 N ASP A 395 O ILE A 406 SHEET 5 C 5 VAL A 330 THR A 332 -1 N ILE A 331 O PHE A 389 SHEET 1 D 2 ILE A 337 SER A 340 0 SHEET 2 D 2 GLU A 380 LEU A 383 -1 O VAL A 381 N THR A 339 SHEET 1 E 6 ALA B 29 PRO B 32 0 SHEET 2 E 6 LEU B 16 PHE B 21 -1 N ALA B 19 O ALA B 29 SHEET 3 E 6 LEU B 8 ASN B 12 -1 N ASP B 11 O LYS B 18 SHEET 4 E 6 THR B 103 GLU B 107 1 O LEU B 104 N CYS B 10 SHEET 5 E 6 ALA B 131 ILE B 136 1 O TYR B 133 N LEU B 105 SHEET 6 E 6 ILE B 357 THR B 358 -1 O ILE B 357 N MET B 132 SHEET 1 F 2 ILE B 71 GLU B 72 0 SHEET 2 F 2 ILE B 75 ILE B 76 -1 O ILE B 75 N GLU B 72 SHEET 1 G 3 TYR B 169 ALA B 170 0 SHEET 2 G 3 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 G 3 MET B 176 LEU B 178 -1 O LEU B 178 N THR B 160 SHEET 1 H 5 TYR B 169 ALA B 170 0 SHEET 2 H 5 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 H 5 GLY B 150 SER B 155 -1 N VAL B 152 O VAL B 163 SHEET 4 H 5 ASN B 297 SER B 300 1 O VAL B 298 N ILE B 151 SHEET 5 H 5 ILE B 329 ILE B 330 1 O ILE B 330 N ASN B 297 SHEET 1 I 2 LYS B 238 GLU B 241 0 SHEET 2 I 2 VAL B 247 ILE B 250 -1 O ILE B 250 N LYS B 238 CISPEP 1 GLY B 63 ILE B 64 0 -1.54 SITE 1 AC1 5 ARG A 5 TRP A 19 GLU A 23 ILE A 85 SITE 2 AC1 5 ASP A 86 SITE 1 AC2 6 ATP B 402 HOH B 502 HOH B 503 HOH B 505 SITE 2 AC2 6 HOH B 535 HOH B 536 SITE 1 AC3 25 GLY B 13 SER B 14 GLY B 15 LEU B 16 SITE 2 AC3 25 LYS B 18 GLY B 156 ASP B 157 GLY B 158 SITE 3 AC3 25 VAL B 159 GLY B 182 ARG B 210 LYS B 213 SITE 4 AC3 25 GLU B 214 GLY B 301 GLY B 302 MET B 305 SITE 5 AC3 25 TYR B 306 LYS B 336 CA B 401 HOH B 502 SITE 6 AC3 25 HOH B 503 HOH B 504 HOH B 506 HOH B 536 SITE 7 AC3 25 HOH B 539 SITE 1 AC4 12 GLY B 15 LEU B 16 PRO B 32 LEU B 67 SITE 2 AC4 12 TYR B 69 ASP B 157 GLY B 182 ARG B 183 SITE 3 AC4 12 THR B 186 GLU B 207 ARG B 210 LYS B 213 CRYST1 54.442 135.872 153.946 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006496 0.00000