HEADER PLANT PROTEIN 05-SEP-12 4GY9 TITLE CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN COMPLEX TITLE 2 WITH N6-ISOPENTENYLADENINE (2IP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTN13 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO TRUNCATULA; SOURCE 3 ORGANISM_COMMON: BARREL MEDIC; SOURCE 4 ORGANISM_TAXID: 3880; SOURCE 5 GENE: MTN13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET TOPO 151D KEYWDS PR-10 FOLD, NODULIN, NODULATION, LEGUME PLANT-RHIZOBIUM SYMBIOSIS, KEYWDS 2 CYTOKININ BINDING, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RUSZKOWSKI,M.SIKORSKI,M.JASKOLSKI REVDAT 6 13-SEP-23 4GY9 1 REMARK SEQADV LINK REVDAT 5 07-MAR-18 4GY9 1 REMARK REVDAT 4 03-DEC-14 4GY9 1 REMARK REVDAT 3 08-JAN-14 4GY9 1 JRNL REVDAT 2 04-DEC-13 4GY9 1 JRNL REVDAT 1 04-SEP-13 4GY9 0 JRNL AUTH M.RUSZKOWSKI,K.SZPOTKOWSKI,M.SIKORSKI,M.JASKOLSKI JRNL TITL THE LANDSCAPE OF CYTOKININ BINDING BY A PLANT NODULIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2365 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24311578 JRNL DOI 10.1107/S0907444913021975 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.FERNANDES,O.PASTERNAK,G.BUJACZ,A.BUJACZ,M.M.SIKORSKI, REMARK 1 AUTH 2 M.JASKOLSKI REMARK 1 TITL LUPINUS LUTEUS PATHOGENESIS-RELATED PROTEIN AS A RESERVOIR REMARK 1 TITL 2 FOR CYTOKININ. REMARK 1 REF J.MOL.BIOL. V. 378 1040 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18406424 REMARK 1 DOI 10.1016/J.JMB.2008.03.027 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.FERNANDES,A.BUJACZ,G.BUJACZ,F.JELEN,M.JASINSKI, REMARK 1 AUTH 2 P.KACHLICKI,J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CYTOKININ-INDUCED STRUCTURAL ADAPTABILITY OF A LUPINUS REMARK 1 TITL 2 LUTEUS PR-10 PROTEIN. REMARK 1 REF FEBS J. V. 276 1596 2009 REMARK 1 REFN ISSN 1742-464X REMARK 1 PMID 19220853 REMARK 1 DOI 10.1111/J.1742-4658.2009.06892.X REMARK 1 REFERENCE 3 REMARK 1 AUTH O.PASTERNAK,G.D.BUJACZ,Y.FUJIMOTO,Y.HASHIMOTO,F.JELEN, REMARK 1 AUTH 2 J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF VIGNA RADIATA CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEIN IN COMPLEX WITH ZEATIN. REMARK 1 REF PLANT CELL V. 18 2622 2006 REMARK 1 REFN ISSN 1040-4651 REMARK 1 PMID 16998071 REMARK 1 DOI 10.1105/TPC.105.037119 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.MICHALSKA,H.FERNANDES,M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF HYP-1, A ST. JOHN'S WORT PROTEIN REMARK 1 TITL 2 IMPLICATED IN THE BIOSYNTHESIS OF HYPERICIN. REMARK 1 REF J.STRUCT.BIOL. V. 169 161 2010 REMARK 1 REFN ISSN 1047-8477 REMARK 1 PMID 19853038 REMARK 1 DOI 10.1016/J.JSB.2009.10.008 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.GAMAS,C.NIEBEL FDE,N.LESCURE,J.CULLIMORE REMARK 1 TITL USE OF A SUBTRACTIVE HYBRIDIZATION APPROACH TO IDENTIFY NEW REMARK 1 TITL 2 MEDICAGO TRUNCATULA GENES INDUCED DURING ROOT NODULE REMARK 1 TITL 3 DEVELOPMENT. REMARK 1 REF MOL.PLANT MICROBE INTERACT. V. 9 233 1996 REMARK 1 REFN ISSN 0894-0282 REMARK 1 PMID 8634476 REMARK 1 REFERENCE 6 REMARK 1 AUTH P.GAMAS,F.DE BILLY,G.TRUCHET REMARK 1 TITL SYMBIOSIS-SPECIFIC EXPRESSION OF TWO MEDICAGO TRUNCATULA REMARK 1 TITL 2 NODULIN GENES, MTN1 AND MTN13, ENCODING PRODUCTS HOMOLOGOUS REMARK 1 TITL 3 TO PLANT DEFENSE PROTEINS. REMARK 1 REF MOL.PLANT MICROBE INTERACT. V. 11 393 1998 REMARK 1 REFN ISSN 0894-0282 REMARK 1 PMID 9574507 REMARK 1 DOI 10.1094/MPMI.1998.11.5.393 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.BIESIADKA,G.BUJACZ,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURES OF TWO HOMOLOGOUS PATHOGENESIS-RELATED REMARK 1 TITL 2 PROTEINS FROM YELLOW LUPINE. REMARK 1 REF J.MOL.BIOL. V. 319 1223 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12079359 REMARK 1 DOI 10.1016/S0022-2836(02)00385-6 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3120 - 3.8930 1.00 2966 155 0.1700 0.1841 REMARK 3 2 3.8930 - 3.0900 1.00 2803 145 0.1455 0.1762 REMARK 3 3 3.0900 - 2.7000 1.00 2754 144 0.1751 0.2108 REMARK 3 4 2.7000 - 2.4530 1.00 2731 141 0.1712 0.2196 REMARK 3 5 2.4530 - 2.2770 1.00 2723 142 0.1601 0.2158 REMARK 3 6 2.2770 - 2.1430 1.00 2690 140 0.1597 0.2207 REMARK 3 7 2.1430 - 2.0400 0.98 2650 137 0.1907 0.2369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1384 REMARK 3 ANGLE : 1.409 1894 REMARK 3 CHIRALITY : 0.080 198 REMARK 3 PLANARITY : 0.008 236 REMARK 3 DIHEDRAL : 15.198 507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -4:12) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4192 2.2599 8.4346 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.1568 REMARK 3 T33: 0.2173 T12: -0.0118 REMARK 3 T13: -0.0104 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 9.5090 L22: 1.3498 REMARK 3 L33: 1.1630 L12: -1.4221 REMARK 3 L13: 1.0357 L23: -0.1137 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: 0.1266 S13: 0.0034 REMARK 3 S21: 0.1441 S22: 0.0572 S23: -0.0804 REMARK 3 S31: -0.0832 S32: 0.0643 S33: 0.0529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 13:24) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1252 15.6064 -4.3176 REMARK 3 T TENSOR REMARK 3 T11: 0.3130 T22: 0.3478 REMARK 3 T33: 0.3492 T12: 0.0624 REMARK 3 T13: -0.0901 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 7.6084 L22: 4.5761 REMARK 3 L33: 2.0914 L12: 2.9416 REMARK 3 L13: 0.0595 L23: 1.8534 REMARK 3 S TENSOR REMARK 3 S11: -0.3416 S12: 0.3851 S13: 0.2756 REMARK 3 S21: -0.6215 S22: 0.1653 S23: 0.7069 REMARK 3 S31: -0.1576 S32: -0.3148 S33: -0.0106 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 25:74) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6705 23.9130 5.4646 REMARK 3 T TENSOR REMARK 3 T11: 0.2861 T22: 0.1958 REMARK 3 T33: 0.2052 T12: 0.0603 REMARK 3 T13: -0.0110 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.3097 L22: 1.1193 REMARK 3 L33: 1.3134 L12: 0.0196 REMARK 3 L13: -0.4067 L23: 0.6825 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0990 S13: 0.1412 REMARK 3 S21: -0.1870 S22: -0.0374 S23: 0.1257 REMARK 3 S31: -0.2063 S32: -0.1767 S33: 0.0586 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 75:122) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9734 9.6203 4.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.1311 REMARK 3 T33: 0.1812 T12: 0.0246 REMARK 3 T13: 0.0125 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.0785 L22: 2.0103 REMARK 3 L33: 2.3231 L12: -0.1469 REMARK 3 L13: 0.7580 L23: 0.4889 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.0462 S13: -0.1394 REMARK 3 S21: -0.0992 S22: 0.0642 S23: 0.1490 REMARK 3 S31: -0.1103 S32: -0.0707 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 123:158) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0552 11.0052 11.2028 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.2236 REMARK 3 T33: 0.2113 T12: 0.0373 REMARK 3 T13: 0.0047 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.3762 L22: 2.4725 REMARK 3 L33: 1.8130 L12: -0.6448 REMARK 3 L13: 1.0291 L23: -0.2954 REMARK 3 S TENSOR REMARK 3 S11: -0.3175 S12: -0.0629 S13: 0.1863 REMARK 3 S21: 0.4099 S22: 0.0234 S23: -0.0343 REMARK 3 S31: -0.1101 S32: -0.0157 S33: 0.2854 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.22343 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM MALONATE, DEHYDRATION AT REMARK 280 ELEVATED SODIUM MALONATE CONCENTRATION (1.9 M), PH 7.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.68733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.34367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.68733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.34367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.68733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 37.34367 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.68733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.34367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.34367 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -254.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.59600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 96.59600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 159 REMARK 465 LYS A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 ASN A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 39.66 -86.22 REMARK 500 SER A 91 -128.90 51.30 REMARK 500 GLU A 110 -130.10 -107.66 REMARK 500 ASP A 157 -9.78 -54.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 0 O REMARK 620 2 GLY A 124 O 79.9 REMARK 620 3 HOH A 370 O 95.8 95.4 REMARK 620 4 HOH A 404 O 91.8 97.7 165.8 REMARK 620 5 HOH A 440 O 161.7 100.5 102.3 69.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 34 O REMARK 620 2 HOH A 319 O 82.9 REMARK 620 3 HOH A 345 O 96.1 158.7 REMARK 620 4 HOH A 347 O 77.7 92.6 108.0 REMARK 620 5 HOH A 350 O 170.6 90.4 92.5 96.1 REMARK 620 6 HOH A 354 O 99.7 90.4 68.7 175.7 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 59 O REMARK 620 2 GLY A 61 O 92.9 REMARK 620 3 HOH A 302 O 91.3 96.1 REMARK 620 4 HOH A 358 O 177.2 84.7 90.4 REMARK 620 5 HOH A 366 O 93.9 104.9 158.0 85.4 REMARK 620 6 HOH A 367 O 108.3 157.0 92.2 73.8 65.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 65 O REMARK 620 2 THR A 66 OG1 85.2 REMARK 620 3 HOH A 407 O 87.7 143.7 REMARK 620 4 HOH A 416 O 96.7 88.5 127.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 65 O REMARK 620 2 SER A 65 OG 75.4 REMARK 620 3 HOH A 323 O 93.8 75.9 REMARK 620 4 HOH A 329 O 89.1 89.0 163.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 107 O REMARK 620 2 GLU A 110 O 89.0 REMARK 620 3 GLY A 111 O 85.3 94.1 REMARK 620 4 HOH A 413 O 177.6 93.4 94.7 REMARK 620 5 HOH A 435 O 91.6 71.5 165.3 89.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZIP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RWS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN REMARK 900 COMPLEX WITH TRANS-ZEATIN REMARK 900 RELATED ID: 1ICX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM REMARK 900 YELLOW LUPINE REMARK 900 RELATED ID: 1IFV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1B FROM REMARK 900 YELLOW LUPINE REMARK 900 RELATED ID: 1XDF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2A FROM REMARK 900 YELLOW LUPINE REMARK 900 RELATED ID: 2FLH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYTOKININ-SPECIFIC BINDING PROTEIN FROM MUNG REMARK 900 BEAN IN COMPLEX WITH CYTOKININ REMARK 900 RELATED ID: 2QIM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2B FROM REMARK 900 YELLOW LUPINE IN COMPLEX WITH CYTOKININ REMARK 900 RELATED ID: 3EI5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYP-1 PROTEIN FROM HYPERICUM PERFORATUM (ST REMARK 900 JOHN'S WORT) INVOLVED IN HYPERICIN BIOSYNTHESIS REMARK 900 RELATED ID: 3US7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHYTOHORMONE BINDING PROTEIN FROM MEDICAGO REMARK 900 TRUNCATULA IN COMPLEX WITH GIBBERELLIC ACID (GA3) DBREF 4GY9 A 1 163 UNP P93330 P93330_MEDTR 1 163 SEQADV 4GY9 ILE A -4 UNP P93330 EXPRESSION TAG SEQADV 4GY9 ASP A -3 UNP P93330 EXPRESSION TAG SEQADV 4GY9 PRO A -2 UNP P93330 EXPRESSION TAG SEQADV 4GY9 PHE A -1 UNP P93330 EXPRESSION TAG SEQADV 4GY9 THR A 0 UNP P93330 EXPRESSION TAG SEQRES 1 A 168 ILE ASP PRO PHE THR MET GLY VAL ILE THR SER GLU SER SEQRES 2 A 168 GLU TYR VAL SER SER LEU SER ALA GLU LYS LEU TYR ARG SEQRES 3 A 168 GLY ILE VAL GLU ASP GLY ASN ILE ILE TYR PRO LYS ALA SEQRES 4 A 168 LEU PRO ARG PHE ILE GLU LYS ALA GLU THR LEU GLU GLY SEQRES 5 A 168 ASP GLY GLY PRO GLY THR ILE LYS LYS LEU THR PHE VAL SEQRES 6 A 168 GLY ASP PHE GLY SER THR LYS GLN HIS ILE ASP MET VAL SEQRES 7 A 168 ASP ARG GLU ASN CYS ALA TYR THR TYR SER VAL TYR GLU SEQRES 8 A 168 GLY ILE ALA LEU SER ASP GLN PRO LEU GLU LYS ILE VAL SEQRES 9 A 168 PHE GLU PHE LYS LEU VAL PRO THR PRO GLU GLU GLY CYS SEQRES 10 A 168 ILE VAL LYS SER THR THR LYS TYR TYR THR LYS GLY ASP SEQRES 11 A 168 ASP ILE GLU LEU SER LYS ASP TYR LEU GLU ALA GLY ILE SEQRES 12 A 168 GLU ARG PHE GLU GLY PHE THR LYS ALA VAL GLU SER PHE SEQRES 13 A 168 LEU LEU ALA ASN PRO ASP TYR ASN LYS ASP SER ASN HET ZIP A 201 15 HET NA A 202 1 HET NA A 203 1 HET NA A 204 1 HET NA A 205 1 HET NA A 206 1 HET NA A 207 1 HET MLI A 208 7 HETNAM ZIP N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE HETNAM NA SODIUM ION HETNAM MLI MALONATE ION HETSYN ZIP ISOPENTENYLADENINE FORMUL 2 ZIP C10 H13 N5 FORMUL 3 NA 6(NA 1+) FORMUL 9 MLI C3 H2 O4 2- FORMUL 10 HOH *146(H2 O) HELIX 1 1 SER A 15 GLU A 25 1 11 HELIX 2 2 ASP A 26 LEU A 35 1 10 HELIX 3 3 SER A 130 ASN A 155 1 26 SHEET 1 A 7 VAL A 3 SER A 12 0 SHEET 2 A 7 CYS A 112 THR A 122 -1 O THR A 118 N SER A 6 SHEET 3 A 7 LEU A 95 PRO A 106 -1 N GLU A 96 O TYR A 121 SHEET 4 A 7 ALA A 79 VAL A 84 -1 N TYR A 82 O PHE A 100 SHEET 5 A 7 SER A 65 ASP A 74 -1 N ASP A 71 O THR A 81 SHEET 6 A 7 ILE A 54 PHE A 59 -1 N LEU A 57 O THR A 66 SHEET 7 A 7 ILE A 39 GLU A 46 -1 N LYS A 41 O THR A 58 LINK O THR A 0 NA NA A 205 1555 1555 2.35 LINK O ALA A 34 NA NA A 204 1555 1555 2.53 LINK O PHE A 59 NA NA A 203 1555 1555 2.37 LINK O GLY A 61 NA NA A 203 1555 1555 2.46 LINK O SER A 65 NA NA A 202 1555 1555 2.31 LINK O SER A 65 NA NA A 206 1555 1555 2.47 LINK OG SER A 65 NA NA A 206 1555 1555 2.64 LINK OG1 THR A 66 NA NA A 202 1555 1555 2.25 LINK O THR A 107 NA NA A 207 1555 1555 2.44 LINK O GLU A 110 NA NA A 207 1555 1555 2.29 LINK O GLY A 111 NA NA A 207 1555 1555 2.58 LINK O GLY A 124 NA NA A 205 1555 1555 2.64 LINK NA NA A 202 O HOH A 407 1555 1555 2.38 LINK NA NA A 202 O HOH A 416 1555 1555 2.42 LINK NA NA A 203 O HOH A 302 1555 1555 2.34 LINK NA NA A 203 O HOH A 358 1555 1555 2.37 LINK NA NA A 203 O HOH A 366 1555 1555 2.43 LINK NA NA A 203 O HOH A 367 1555 1555 2.56 LINK NA NA A 204 O HOH A 319 1555 1555 2.40 LINK NA NA A 204 O HOH A 345 1555 1555 2.48 LINK NA NA A 204 O HOH A 347 1555 1555 2.57 LINK NA NA A 204 O HOH A 350 1555 1555 2.39 LINK NA NA A 204 O HOH A 354 1555 1555 2.45 LINK NA NA A 205 O HOH A 370 1555 1555 2.46 LINK NA NA A 205 O HOH A 404 1555 1555 2.54 LINK NA NA A 205 O HOH A 440 1555 1555 2.49 LINK NA NA A 206 O HOH A 323 1555 1555 2.41 LINK NA NA A 206 O HOH A 329 1555 1555 2.45 LINK NA NA A 207 O HOH A 413 1555 1555 2.41 LINK NA NA A 207 O HOH A 435 1555 1555 2.42 SITE 1 AC1 9 GLY A 61 ASP A 62 THR A 66 GLN A 68 SITE 2 AC1 9 TYR A 82 PHE A 100 TYR A 120 GLY A 137 SITE 3 AC1 9 PHE A 144 SITE 1 AC2 5 ASP A 62 SER A 65 THR A 66 HOH A 407 SITE 2 AC2 5 HOH A 416 SITE 1 AC3 6 PHE A 59 GLY A 61 HOH A 302 HOH A 358 SITE 2 AC3 6 HOH A 366 HOH A 367 SITE 1 AC4 6 ALA A 34 HOH A 319 HOH A 345 HOH A 347 SITE 2 AC4 6 HOH A 350 HOH A 354 SITE 1 AC5 5 THR A 0 GLY A 124 HOH A 370 HOH A 404 SITE 2 AC5 5 HOH A 440 SITE 1 AC6 3 SER A 65 HOH A 323 HOH A 329 SITE 1 AC7 5 THR A 107 GLU A 110 GLY A 111 HOH A 413 SITE 2 AC7 5 HOH A 435 SITE 1 AC8 7 GLU A 86 GLY A 87 ILE A 88 ALA A 89 SITE 2 AC8 7 HOH A 368 HOH A 371 HOH A 431 CRYST1 96.596 96.596 112.031 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010352 0.005977 0.000000 0.00000 SCALE2 0.000000 0.011954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008926 0.00000