HEADER OXIDOREDUCTASE 05-SEP-12 4GYB TITLE TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AT 2.4 A RESOLUTION TITLE 2 AC1709 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LACCASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 457428; SOURCE 4 STRAIN: TK24; SOURCE 5 GENE: SSPG_00990; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS MULTICOPPER BLUE PROTEIN, TWO-DOMAIN LACCASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY REVDAT 2 08-NOV-23 4GYB 1 REMARK LINK REVDAT 1 02-OCT-13 4GYB 0 JRNL AUTH A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY JRNL TITL TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AT 2.4 A JRNL TITL 2 RESOLUTION AC1709 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3926 - 5.7805 0.99 2800 148 0.1750 0.2069 REMARK 3 2 5.7805 - 4.5897 1.00 2650 140 0.1236 0.1323 REMARK 3 3 4.5897 - 4.0100 1.00 2600 136 0.1029 0.1099 REMARK 3 4 4.0100 - 3.6435 1.00 2584 136 0.1219 0.1463 REMARK 3 5 3.6435 - 3.3825 1.00 2578 136 0.1327 0.1532 REMARK 3 6 3.3825 - 3.1831 1.00 2550 134 0.1548 0.1762 REMARK 3 7 3.1831 - 3.0237 1.00 2536 134 0.1617 0.1860 REMARK 3 8 3.0237 - 2.8921 1.00 2543 134 0.1670 0.2182 REMARK 3 9 2.8921 - 2.7808 1.00 2547 134 0.1872 0.2604 REMARK 3 10 2.7808 - 2.6849 1.00 2516 132 0.2070 0.2446 REMARK 3 11 2.6849 - 2.6009 1.00 2537 134 0.2163 0.2521 REMARK 3 12 2.6009 - 2.5266 1.00 2518 132 0.2398 0.2683 REMARK 3 13 2.5266 - 2.4601 1.00 2511 132 0.2581 0.2729 REMARK 3 14 2.4601 - 2.4001 1.00 2503 132 0.2825 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2288 REMARK 3 ANGLE : 1.119 3087 REMARK 3 CHIRALITY : 0.074 313 REMARK 3 PLANARITY : 0.004 404 REMARK 3 DIHEDRAL : 14.486 835 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.680 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31%(V/V) PEG MONOMETHYL ETHER 550, REMARK 280 0.1M NACL, 0.1M GLYCINE, PH 9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 88.77000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 88.77000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 88.77000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 88.77000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 88.77000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 88.77000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 88.77000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 88.77000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 88.77000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 44.38500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 133.15500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 44.38500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 44.38500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.38500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 133.15500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 44.38500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 133.15500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 44.38500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 133.15500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 44.38500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 133.15500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 133.15500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 44.38500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 133.15500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 44.38500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 44.38500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 44.38500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 133.15500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 44.38500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 44.38500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 133.15500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 133.15500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 133.15500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 44.38500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 133.15500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 44.38500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 133.15500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 44.38500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 44.38500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 44.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 PHE A 6 REMARK 465 ASN A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 VAL A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 LYS A 35 REMARK 465 GLU A 315 REMARK 465 PRO A 316 REMARK 465 HIS A 317 REMARK 465 GLU A 318 REMARK 465 HIS A 319 REMARK 465 GLY A 320 REMARK 465 GLY A 321 REMARK 465 ALA A 322 REMARK 465 THR A 323 REMARK 465 ALA A 324 REMARK 465 LYS A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 GLU A 328 REMARK 465 SER A 329 REMARK 465 GLY A 330 REMARK 465 GLU A 331 REMARK 465 PRO A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 HIS A 339 REMARK 465 GLU A 340 REMARK 465 HIS A 341 REMARK 465 GLU A 342 REMARK 465 HIS A 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 37 -29.19 -142.96 REMARK 500 TRP A 153 -166.93 -125.50 REMARK 500 ASP A 197 -123.93 47.36 REMARK 500 PRO A 312 109.23 -37.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 O REMARK 620 2 PGE A 409 O4 107.2 REMARK 620 3 PGE A 409 O3 104.2 64.5 REMARK 620 4 PGE A 409 O1 81.7 171.1 113.1 REMARK 620 5 PGE A 409 O2 75.9 119.5 56.8 61.0 REMARK 620 6 HOH A 653 O 144.3 108.3 94.2 62.9 89.8 REMARK 620 7 HOH A 654 O 84.6 62.8 126.8 120.2 160.1 108.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 ND1 REMARK 620 2 CYS A 288 SG 130.4 REMARK 620 3 HIS A 293 ND1 108.5 119.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 403 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 236 NE2 REMARK 620 2 HIS A 287 NE2 110.6 REMARK 620 3 HOH A 512 O 102.9 97.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 410 DBREF 4GYB A 1 343 UNP D6EFA0 D6EFA0_STRLI 1 343 SEQRES 1 A 343 MET ASP ARG ARG GLY PHE ASN ARG ARG VAL LEU LEU GLY SEQRES 2 A 343 GLY ALA ALA ALA ALA THR SER LEU SER ILE ALA PRO GLU SEQRES 3 A 343 VAL ALA GLY ALA ALA PRO ALA ALA LYS GLY ILE THR ALA SEQRES 4 A 343 ARG THR ALA PRO ALA GLY GLY GLU VAL ARG HIS LEU LYS SEQRES 5 A 343 MET TYR ALA GLU LYS LEU ALA ASP GLY GLN MET GLY TYR SEQRES 6 A 343 GLY PHE GLU LYS GLY LYS ALA SER VAL PRO GLY PRO LEU SEQRES 7 A 343 ILE GLU VAL ASN GLU GLY ASP THR LEU HIS ILE GLU PHE SEQRES 8 A 343 THR ASN THR MET ASP VAL ARG ALA SER LEU HIS VAL HIS SEQRES 9 A 343 GLY LEU ASP TYR GLU ILE SER SER ASP GLY THR ALA MET SEQRES 10 A 343 ASN LYS SER ASP VAL GLU PRO GLY GLY THR ARG THR TYR SEQRES 11 A 343 THR TRP ARG THR HIS LYS PRO GLY ARG ARG ASP ASP GLY SEQRES 12 A 343 THR TRP ARG PRO GLY SER ALA GLY TYR TRP HIS TYR HIS SEQRES 13 A 343 ASP HIS VAL VAL GLY THR GLU HIS GLY THR GLY GLY ILE SEQRES 14 A 343 ARG ASN GLY LEU TYR GLY PRO VAL ILE VAL ARG ARG LYS SEQRES 15 A 343 GLY ASP VAL LEU PRO ASP ALA THR HIS THR ILE VAL PHE SEQRES 16 A 343 ASN ASP MET THR ILE ASN ASN ARG LYS PRO HIS THR GLY SEQRES 17 A 343 PRO ASP PHE GLU ALA THR VAL GLY ASP ARG VAL GLU ILE SEQRES 18 A 343 VAL MET ILE THR HIS GLY GLU TYR TYR HIS THR PHE HIS SEQRES 19 A 343 MET HIS GLY HIS ARG TRP ALA ASP ASN ARG THR GLY ILE SEQRES 20 A 343 LEU THR GLY PRO ASP ASP PRO SER ARG VAL ILE ASP ASN SEQRES 21 A 343 LYS ILE THR GLY PRO ALA ASP SER PHE GLY PHE GLN ILE SEQRES 22 A 343 ILE ALA GLY GLU GLY VAL GLY ALA GLY ALA TRP MET TYR SEQRES 23 A 343 HIS CYS HIS VAL GLN SER HIS SER ASP MET GLY MET VAL SEQRES 24 A 343 GLY LEU PHE LEU VAL LYS LYS PRO ASP GLY THR ILE PRO SEQRES 25 A 343 GLY TYR GLU PRO HIS GLU HIS GLY GLY ALA THR ALA LYS SEQRES 26 A 343 SER GLY GLU SER GLY GLU PRO THR GLY GLY ALA ALA ALA SEQRES 27 A 343 HIS GLU HIS GLU HIS HET CU A 401 1 HET CU A 402 1 HET CU A 403 1 HET CU A 404 1 HET NA A 405 1 HET CL A 406 1 HET PG4 A 407 13 HET PGE A 408 10 HET PGE A 409 10 HET PG4 A 410 13 HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 CU 4(CU 2+) FORMUL 6 NA NA 1+ FORMUL 7 CL CL 1- FORMUL 8 PG4 2(C8 H18 O5) FORMUL 9 PGE 2(C6 H14 O4) FORMUL 12 HOH *165(H2 O) HELIX 1 1 GLU A 109 ASP A 113 5 5 HELIX 2 2 GLY A 165 GLY A 172 1 8 HELIX 3 3 VAL A 290 MET A 296 1 7 SHEET 1 A 4 MET A 63 GLY A 66 0 SHEET 2 A 4 VAL A 48 LYS A 57 -1 N GLU A 56 O GLY A 64 SHEET 3 A 4 THR A 86 ASN A 93 1 O GLU A 90 N LEU A 51 SHEET 4 A 4 THR A 127 ARG A 133 -1 O TYR A 130 N ILE A 89 SHEET 1 B 4 ILE A 79 ASN A 82 0 SHEET 2 B 4 TYR A 174 ARG A 180 1 O ILE A 178 N ILE A 79 SHEET 3 B 4 GLY A 151 HIS A 156 -1 N TRP A 153 O VAL A 177 SHEET 4 B 4 HIS A 102 VAL A 103 -1 N HIS A 102 O HIS A 156 SHEET 1 C 2 GLY A 138 ARG A 139 0 SHEET 2 C 2 TRP A 145 ARG A 146 -1 O ARG A 146 N GLY A 138 SHEET 1 D 4 THR A 199 ILE A 200 0 SHEET 2 D 4 ALA A 189 ASN A 196 -1 N ASN A 196 O THR A 199 SHEET 3 D 4 ARG A 218 HIS A 226 1 O GLU A 220 N ALA A 189 SHEET 4 D 4 SER A 268 ILE A 274 -1 O PHE A 269 N MET A 223 SHEET 1 E 5 ASP A 210 THR A 214 0 SHEET 2 E 5 VAL A 299 LYS A 305 1 O LEU A 303 N PHE A 211 SHEET 3 E 5 GLY A 282 CYS A 288 -1 N TRP A 284 O PHE A 302 SHEET 4 E 5 HIS A 231 MET A 235 -1 N HIS A 234 O HIS A 287 SHEET 5 E 5 ASN A 260 THR A 263 -1 O THR A 263 N HIS A 231 SHEET 1 F 2 TRP A 240 ALA A 241 0 SHEET 2 F 2 VAL A 257 ILE A 258 -1 O ILE A 258 N TRP A 240 LINK O GLU A 80 NA NA A 405 1555 1555 2.68 LINK ND1 HIS A 231 CU CU A 401 1555 1555 2.04 LINK NE2 HIS A 234 CU CU A 404 1555 1555 1.96 LINK NE2 HIS A 236 CU CU A 403 1555 1555 2.05 LINK NE2 HIS A 287 CU CU A 403 1555 1555 2.23 LINK SG CYS A 288 CU CU A 401 1555 1555 2.25 LINK NE2 HIS A 289 CU CU A 402 1555 1555 2.13 LINK ND1 HIS A 293 CU CU A 401 1555 1555 1.97 LINK CU CU A 403 O HOH A 512 1555 1555 2.53 LINK NA NA A 405 O4 PGE A 409 1555 1555 2.64 LINK NA NA A 405 O3 PGE A 409 1555 1555 2.81 LINK NA NA A 405 O1 PGE A 409 1555 1555 2.93 LINK NA NA A 405 O2 PGE A 409 1555 1555 3.02 LINK NA NA A 405 O HOH A 653 1555 1555 2.82 LINK NA NA A 405 O HOH A 654 1555 1555 2.59 CISPEP 1 VAL A 74 PRO A 75 0 1.63 CISPEP 2 GLY A 208 PRO A 209 0 8.71 SITE 1 AC1 4 HIS A 231 CYS A 288 HIS A 293 MET A 298 SITE 1 AC2 4 HIS A 104 HIS A 156 HIS A 289 HOH A 512 SITE 1 AC3 4 HIS A 158 HIS A 236 HIS A 287 HOH A 512 SITE 1 AC4 6 HIS A 102 HIS A 104 HIS A 234 HIS A 236 SITE 2 AC4 6 HOH A 511 HOH A 512 SITE 1 AC5 5 ARG A 49 GLU A 80 PGE A 409 HOH A 653 SITE 2 AC5 5 HOH A 654 SITE 1 AC6 1 THR A 192 SITE 1 AC7 6 GLN A 62 SER A 73 VAL A 74 ASN A 202 SITE 2 AC7 6 PG4 A 410 HOH A 611 SITE 1 AC8 3 LYS A 136 ARG A 139 ARG A 146 SITE 1 AC9 6 ARG A 49 LEU A 78 GLU A 80 NA A 405 SITE 2 AC9 6 HOH A 653 HOH A 654 SITE 1 BC1 5 ARG A 170 ASN A 171 ASN A 202 PG4 A 407 SITE 2 BC1 5 HOH A 621 CRYST1 177.540 177.540 177.540 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005633 0.00000