data_4GYI # _entry.id 4GYI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GYI pdb_00004gyi 10.2210/pdb4gyi/pdb RCSB RCSB074792 ? ? WWPDB D_1000074792 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4GYG _pdbx_database_related.details 'Crystal structure of Apo-Rio2 Kinase from C. Thermophilum' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GYI _pdbx_database_status.recvd_initial_deposition_date 2012-09-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferreira-Cerca, S.' 1 'Sagar, V.' 2 'Schafer, T.' 3 'Diop, M.' 4 'Wesseling, A.M.' 5 'Lu, H.' 6 'Chai, E.' 7 'Hurt, E.' 8 'LaRonde-LeBlanc, N.' 9 # _citation.id primary _citation.title 'ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 1316 _citation.page_last 1323 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23104056 _citation.pdbx_database_id_DOI 10.1038/nsmb.2403 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferreira-Cerca, S.' 1 ? primary 'Sagar, V.' 2 ? primary 'Schafer, T.' 3 ? primary 'Diop, M.' 4 ? primary 'Wesseling, A.M.' 5 ? primary 'Lu, H.' 6 ? primary 'Chai, E.' 7 ? primary 'Hurt, E.' 8 ? primary 'Laronde-Leblanc, N.' 9 ? # _cell.entry_id 4GYI _cell.length_a 119.624 _cell.length_b 119.624 _cell.length_c 71.783 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GYI _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rio2 kinase' 44771.824 1 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 104 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SMKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYG GLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAA IKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIRE EKDAEDPSSITLTPIII(PHD)FPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGAKRLD AALEASGFTKKMAKDLEAAIREQQESRNDEEDSDDYEEDSDKEKASNEDTDVDDGRLQVIGDHVQLGTEGDLKKLTINDG T ; _entity_poly.pdbx_seq_one_letter_code_can ;SMKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYG GLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAA IKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIRE EKDAEDPSSITLTPIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGAKRLDAALE ASGFTKKMAKDLEAAIREQQESRNDEEDSDDYEEDSDKEKASNEDTDVDDGRLQVIGDHVQLGTEGDLKKLTINDGT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 LYS n 1 4 LEU n 1 5 ASP n 1 6 THR n 1 7 ARG n 1 8 ALA n 1 9 MET n 1 10 ARG n 1 11 HIS n 1 12 LEU n 1 13 THR n 1 14 ALA n 1 15 GLU n 1 16 ASP n 1 17 TRP n 1 18 ARG n 1 19 VAL n 1 20 LEU n 1 21 THR n 1 22 ALA n 1 23 VAL n 1 24 GLU n 1 25 MET n 1 26 GLY n 1 27 SER n 1 28 LYS n 1 29 ASN n 1 30 HIS n 1 31 GLU n 1 32 ILE n 1 33 VAL n 1 34 PRO n 1 35 THR n 1 36 PRO n 1 37 LEU n 1 38 ILE n 1 39 GLU n 1 40 LYS n 1 41 ILE n 1 42 ALA n 1 43 ARG n 1 44 LEU n 1 45 ARG n 1 46 GLY n 1 47 GLY n 1 48 SER n 1 49 SER n 1 50 GLY n 1 51 VAL n 1 52 HIS n 1 53 LYS n 1 54 SER n 1 55 ILE n 1 56 ALA n 1 57 THR n 1 58 LEU n 1 59 ALA n 1 60 LYS n 1 61 ALA n 1 62 GLY n 1 63 LEU n 1 64 ILE n 1 65 ALA n 1 66 ARG n 1 67 MET n 1 68 LYS n 1 69 GLU n 1 70 ALA n 1 71 LYS n 1 72 TYR n 1 73 ASP n 1 74 GLY n 1 75 TYR n 1 76 ARG n 1 77 LEU n 1 78 THR n 1 79 TYR n 1 80 GLY n 1 81 GLY n 1 82 LEU n 1 83 ASP n 1 84 TYR n 1 85 LEU n 1 86 ALA n 1 87 LEU n 1 88 HIS n 1 89 THR n 1 90 HIS n 1 91 ALA n 1 92 ALA n 1 93 ARG n 1 94 LYS n 1 95 ASP n 1 96 VAL n 1 97 TYR n 1 98 SER n 1 99 VAL n 1 100 GLY n 1 101 SER n 1 102 ARG n 1 103 ILE n 1 104 GLY n 1 105 VAL n 1 106 GLY n 1 107 LYS n 1 108 GLU n 1 109 SER n 1 110 ASP n 1 111 ILE n 1 112 MET n 1 113 ILE n 1 114 VAL n 1 115 ALA n 1 116 ASP n 1 117 GLU n 1 118 LYS n 1 119 GLY n 1 120 LYS n 1 121 GLN n 1 122 LYS n 1 123 VAL n 1 124 LEU n 1 125 LYS n 1 126 ILE n 1 127 HIS n 1 128 ARG n 1 129 LEU n 1 130 GLY n 1 131 ARG n 1 132 ILE n 1 133 SER n 1 134 PHE n 1 135 ARG n 1 136 THR n 1 137 VAL n 1 138 LYS n 1 139 ALA n 1 140 ASN n 1 141 ARG n 1 142 ASP n 1 143 TYR n 1 144 LEU n 1 145 ARG n 1 146 ASN n 1 147 ARG n 1 148 SER n 1 149 THR n 1 150 GLY n 1 151 SER n 1 152 TRP n 1 153 MET n 1 154 TYR n 1 155 LEU n 1 156 SER n 1 157 ARG n 1 158 LEU n 1 159 ALA n 1 160 ALA n 1 161 ILE n 1 162 LYS n 1 163 GLU n 1 164 PHE n 1 165 ALA n 1 166 PHE n 1 167 MET n 1 168 LYS n 1 169 ALA n 1 170 LEU n 1 171 TYR n 1 172 GLU n 1 173 GLU n 1 174 GLY n 1 175 PHE n 1 176 PRO n 1 177 VAL n 1 178 PRO n 1 179 GLU n 1 180 PRO n 1 181 ILE n 1 182 ALA n 1 183 GLN n 1 184 SER n 1 185 ARG n 1 186 HIS n 1 187 THR n 1 188 ILE n 1 189 VAL n 1 190 MET n 1 191 SER n 1 192 LEU n 1 193 VAL n 1 194 ASP n 1 195 ALA n 1 196 LEU n 1 197 PRO n 1 198 MET n 1 199 ARG n 1 200 GLN n 1 201 VAL n 1 202 SER n 1 203 SER n 1 204 VAL n 1 205 PRO n 1 206 ASP n 1 207 PRO n 1 208 ALA n 1 209 SER n 1 210 LEU n 1 211 TYR n 1 212 ALA n 1 213 ASP n 1 214 LEU n 1 215 ILE n 1 216 ALA n 1 217 LEU n 1 218 ILE n 1 219 LEU n 1 220 ARG n 1 221 LEU n 1 222 ALA n 1 223 LYS n 1 224 HIS n 1 225 GLY n 1 226 LEU n 1 227 ILE n 1 228 HIS n 1 229 GLY n 1 230 ASP n 1 231 PHE n 1 232 ASN n 1 233 GLU n 1 234 PHE n 1 235 ASN n 1 236 ILE n 1 237 LEU n 1 238 ILE n 1 239 ARG n 1 240 GLU n 1 241 GLU n 1 242 LYS n 1 243 ASP n 1 244 ALA n 1 245 GLU n 1 246 ASP n 1 247 PRO n 1 248 SER n 1 249 SER n 1 250 ILE n 1 251 THR n 1 252 LEU n 1 253 THR n 1 254 PRO n 1 255 ILE n 1 256 ILE n 1 257 ILE n 1 258 PHD n 1 259 PHE n 1 260 PRO n 1 261 GLN n 1 262 MET n 1 263 VAL n 1 264 SER n 1 265 MET n 1 266 ASP n 1 267 HIS n 1 268 PRO n 1 269 ASN n 1 270 ALA n 1 271 GLU n 1 272 MET n 1 273 TYR n 1 274 PHE n 1 275 ASP n 1 276 ARG n 1 277 ASP n 1 278 VAL n 1 279 GLN n 1 280 CYS n 1 281 ILE n 1 282 LYS n 1 283 ARG n 1 284 PHE n 1 285 PHE n 1 286 GLU n 1 287 ARG n 1 288 ARG n 1 289 PHE n 1 290 HIS n 1 291 PHE n 1 292 VAL n 1 293 SER n 1 294 THR n 1 295 THR n 1 296 PRO n 1 297 GLY n 1 298 PRO n 1 299 PHE n 1 300 TYR n 1 301 LYS n 1 302 ASP n 1 303 ALA n 1 304 LYS n 1 305 LYS n 1 306 THR n 1 307 VAL n 1 308 GLY n 1 309 LYS n 1 310 ASP n 1 311 GLY n 1 312 ALA n 1 313 LYS n 1 314 ARG n 1 315 LEU n 1 316 ASP n 1 317 ALA n 1 318 ALA n 1 319 LEU n 1 320 GLU n 1 321 ALA n 1 322 SER n 1 323 GLY n 1 324 PHE n 1 325 THR n 1 326 LYS n 1 327 LYS n 1 328 MET n 1 329 ALA n 1 330 LYS n 1 331 ASP n 1 332 LEU n 1 333 GLU n 1 334 ALA n 1 335 ALA n 1 336 ILE n 1 337 ARG n 1 338 GLU n 1 339 GLN n 1 340 GLN n 1 341 GLU n 1 342 SER n 1 343 ARG n 1 344 ASN n 1 345 ASP n 1 346 GLU n 1 347 GLU n 1 348 ASP n 1 349 SER n 1 350 ASP n 1 351 ASP n 1 352 TYR n 1 353 GLU n 1 354 GLU n 1 355 ASP n 1 356 SER n 1 357 ASP n 1 358 LYS n 1 359 GLU n 1 360 LYS n 1 361 ALA n 1 362 SER n 1 363 ASN n 1 364 GLU n 1 365 ASP n 1 366 THR n 1 367 ASP n 1 368 VAL n 1 369 ASP n 1 370 ASP n 1 371 GLY n 1 372 ARG n 1 373 LEU n 1 374 GLN n 1 375 VAL n 1 376 ILE n 1 377 GLY n 1 378 ASP n 1 379 HIS n 1 380 VAL n 1 381 GLN n 1 382 LEU n 1 383 GLY n 1 384 THR n 1 385 GLU n 1 386 GLY n 1 387 ASP n 1 388 LEU n 1 389 LYS n 1 390 LYS n 1 391 LEU n 1 392 THR n 1 393 ILE n 1 394 ASN n 1 395 ASP n 1 396 GLY n 1 397 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTHT_0033330, Rio2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 1495 / CBS 144.50 / IMI 039719' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chaetomium thermophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 759272 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(TM) PLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G0S5R3_CHATD _struct_ref.pdbx_db_accession G0S5R3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIG VGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQS RHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIDFPQMVS MDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGAKRLDAALEASGFTKKMAKDLEAAIREQQESRN DEEDSDDYEEDSDKEKASNEDTDVDDGRLQVIGDHVQLGTEGDLKKLTINDGT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GYI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 25 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 397 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G0S5R3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 373 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 396 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GYI SER A 1 ? UNP G0S5R3 ? ? 'expression tag' 0 1 1 4GYI MET A 2 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 1 2 1 4GYI LYS A 3 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 2 3 1 4GYI LEU A 4 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 3 4 1 4GYI ASP A 5 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 4 5 1 4GYI THR A 6 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 5 6 1 4GYI ARG A 7 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 6 7 1 4GYI ALA A 8 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 7 8 1 4GYI MET A 9 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 8 9 1 4GYI ARG A 10 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 9 10 1 4GYI HIS A 11 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 10 11 1 4GYI LEU A 12 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 11 12 1 4GYI THR A 13 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 12 13 1 4GYI ALA A 14 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 13 14 1 4GYI GLU A 15 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 14 15 1 4GYI ASP A 16 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 15 16 1 4GYI TRP A 17 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 16 17 1 4GYI ARG A 18 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 17 18 1 4GYI VAL A 19 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 18 19 1 4GYI LEU A 20 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 19 20 1 4GYI THR A 21 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 20 21 1 4GYI ALA A 22 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 21 22 1 4GYI VAL A 23 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 22 23 1 4GYI GLU A 24 ? UNP G0S5R3 ? ? 'SEE REMARK 999' 23 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHD 'L-peptide linking' n 'ASPARTYL PHOSPHATE' ? 'C4 H8 N O7 P' 213.083 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GYI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris, 14-16% Poly-ethylene glycol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-07-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'KOHZU HLD8-24' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4GYI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 19451 _reflns.number_all 19451 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate 38.55 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.61 _reflns_shell.d_res_low 2.77 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.0796 _reflns_shell.pdbx_Rsym_value 0.144 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1940 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GYI _refine.ls_number_reflns_obs 18535 _refine.ls_number_reflns_all 19451 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.13 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.532 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 95.27 _refine.ls_R_factor_obs 0.1740 _refine.ls_R_factor_all .1885 _refine.ls_R_factor_R_work 0.1682 _refine.ls_R_factor_R_free 0.2262 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.14 _refine.ls_number_reflns_R_free 1880 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 53.6 _refine.aniso_B[1][1] 1.8381 _refine.aniso_B[2][2] 1.8381 _refine.aniso_B[3][3] -3.6761 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.326 _refine.solvent_model_param_bsol 46.954 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1TQP _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'anisotropic TLS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.31 _refine.pdbx_overall_phase_error 23.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4GYI _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2673 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 2813 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 34.532 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 2791 ? 'X-RAY DIFFRACTION' f_angle_d 1.214 ? ? 3773 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.794 ? ? 1064 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.078 ? ? 414 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 476 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.1998 2.2593 1150 0.2056 85.00 0.2376 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.2593 2.3258 1190 0.1967 89.00 0.2934 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3258 2.4008 1229 0.2095 91.00 0.3141 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4008 2.4866 1238 0.1958 92.00 0.2936 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.4866 2.5862 1247 0.2123 94.00 0.2793 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.5862 2.7038 1289 0.1924 96.00 0.2556 . . 159 . . . . 'X-RAY DIFFRACTION' . 2.7038 2.8463 1292 0.1977 97.00 0.2557 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.8463 3.0245 1311 0.1858 98.00 0.2615 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.0245 3.2579 1326 0.1727 98.00 0.2565 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.2579 3.5854 1343 0.1740 99.00 0.2419 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.5854 4.1035 1344 0.1653 100.00 0.1996 . . 147 . . . . 'X-RAY DIFFRACTION' . 4.1035 5.1672 1362 0.1277 100.00 0.1943 . . 142 . . . . 'X-RAY DIFFRACTION' . 5.1672 34.5367 1334 0.1562 99.00 0.1799 . . 152 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4GYI _struct.title 'Crystal structure of the Rio2 kinase-ADP/Mg2+-phosphoaspartate complex from Chaetomium thermophilum' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GYI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;protein kinase, ADP complex, phosphoaspartate, acyl-phosphate, ribosome biogenesis, ser/thr protein kinase, Ribosome biogenesis; Ribosomal RNA processing; pre-40S maturation, pre-40S, Phosphorylation, transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 7 ? HIS A 11 ? ARG A 6 HIS A 10 5 ? 5 HELX_P HELX_P2 2 THR A 13 ? SER A 27 ? THR A 12 SER A 26 1 ? 15 HELX_P HELX_P3 3 THR A 35 ? ARG A 43 ? THR A 34 ARG A 42 1 ? 9 HELX_P HELX_P4 4 GLY A 50 ? ALA A 61 ? GLY A 49 ALA A 60 1 ? 12 HELX_P HELX_P5 5 THR A 78 ? ARG A 93 ? THR A 77 ARG A 92 1 ? 16 HELX_P HELX_P6 6 SER A 148 ? GLU A 173 ? SER A 147 GLU A 172 1 ? 26 HELX_P HELX_P7 7 ARG A 199 ? VAL A 201 ? ARG A 198 VAL A 200 5 ? 3 HELX_P HELX_P8 8 ASP A 206 ? HIS A 224 ? ASP A 205 HIS A 223 1 ? 19 HELX_P HELX_P9 9 ASN A 269 ? HIS A 290 ? ASN A 268 HIS A 289 1 ? 22 HELX_P HELX_P10 10 PHE A 299 ? LYS A 305 ? PHE A 298 LYS A 304 1 ? 7 HELX_P HELX_P11 11 ARG A 314 ? ALA A 318 ? ARG A 313 ALA A 317 5 ? 5 HELX_P HELX_P12 12 THR A 325 ? SER A 342 ? THR A 324 SER A 341 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 257 C ? ? ? 1_555 A PHD 258 N ? ? A ILE 256 A PHD 257 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A PHD 258 C ? ? ? 1_555 A PHE 259 N ? ? A PHD 257 A PHE 258 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A ASN 235 OD1 ? ? ? 1_555 C MG . MG ? ? A ASN 234 A MG 402 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc2 metalc ? ? A PHD 258 OD1 ? ? ? 1_555 C MG . MG ? ? A PHD 257 A MG 402 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc3 metalc ? ? B ADP . O1A ? ? ? 1_555 C MG . MG ? ? A ADP 401 A MG 402 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc4 metalc ? ? B ADP . O2B ? ? ? 1_555 C MG . MG ? ? A ADP 401 A MG 402 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 523 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 543 1_555 ? ? ? ? ? ? ? 2.112 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 45 A . ? ARG 44 A GLY 46 A ? GLY 45 A 1 -1.63 2 GLY 46 A . ? GLY 45 A GLY 47 A ? GLY 46 A 1 0.87 3 SER 48 A . ? SER 47 A SER 49 A ? SER 48 A 1 -7.45 4 GLY 297 A . ? GLY 296 A PRO 298 A ? PRO 297 A 1 -0.19 5 VAL 307 A . ? VAL 306 A GLY 308 A ? GLY 307 A 1 -18.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 3 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 33 ? PRO A 34 ? VAL A 32 PRO A 33 A 2 ASP A 73 ? LEU A 77 ? ASP A 72 LEU A 76 A 3 ILE A 64 ? LYS A 68 ? ILE A 63 LYS A 67 B 1 SER A 98 ? VAL A 105 ? SER A 97 VAL A 104 B 2 SER A 109 ? ALA A 115 ? SER A 108 ALA A 114 B 3 GLN A 121 ? HIS A 127 ? GLN A 120 HIS A 126 B 4 THR A 187 ? SER A 191 ? THR A 186 SER A 190 B 5 PRO A 180 ? SER A 184 ? PRO A 179 SER A 183 C 1 ARG A 131 ? ILE A 132 ? ARG A 130 ILE A 131 C 2 ASP A 142 ? TYR A 143 ? ASP A 141 TYR A 142 D 1 LEU A 196 ? PRO A 197 ? LEU A 195 PRO A 196 D 2 ILE A 236 ? LYS A 242 ? ILE A 235 LYS A 241 D 3 ILE A 250 ? ILE A 256 ? ILE A 249 ILE A 255 E 1 LEU A 226 ? ILE A 227 ? LEU A 225 ILE A 226 E 2 VAL A 263 ? SER A 264 ? VAL A 262 SER A 263 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 33 ? N VAL A 32 O TYR A 75 ? O TYR A 74 A 2 3 O GLY A 74 ? O GLY A 73 N MET A 67 ? N MET A 66 B 1 2 N GLY A 100 ? N GLY A 99 O ILE A 113 ? O ILE A 112 B 2 3 N VAL A 114 ? N VAL A 113 O LYS A 122 ? O LYS A 121 B 3 4 N VAL A 123 ? N VAL A 122 O MET A 190 ? O MET A 189 B 4 5 O VAL A 189 ? O VAL A 188 N ALA A 182 ? N ALA A 181 C 1 2 N ILE A 132 ? N ILE A 131 O ASP A 142 ? O ASP A 141 D 1 2 N LEU A 196 ? N LEU A 195 O ILE A 238 ? O ILE A 237 D 2 3 N ARG A 239 ? N ARG A 238 O THR A 253 ? O THR A 252 E 1 2 N ILE A 227 ? N ILE A 226 O VAL A 263 ? O VAL A 262 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 401 ? 19 'BINDING SITE FOR RESIDUE ADP A 401' AC2 Software A MG 402 ? 5 'BINDING SITE FOR RESIDUE MG A 402' AC3 Software A EDO 403 ? 7 'BINDING SITE FOR RESIDUE EDO A 403' AC4 Software A EDO 404 ? 3 'BINDING SITE FOR RESIDUE EDO A 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 SER A 109 ? SER A 108 . ? 1_555 ? 2 AC1 19 ILE A 111 ? ILE A 110 . ? 1_555 ? 3 AC1 19 LYS A 125 ? LYS A 124 . ? 1_555 ? 4 AC1 19 PRO A 178 ? PRO A 177 . ? 1_555 ? 5 AC1 19 MET A 190 ? MET A 189 . ? 1_555 ? 6 AC1 19 SER A 191 ? SER A 190 . ? 1_555 ? 7 AC1 19 VAL A 193 ? VAL A 192 . ? 1_555 ? 8 AC1 19 PRO A 197 ? PRO A 196 . ? 1_555 ? 9 AC1 19 PHE A 234 ? PHE A 233 . ? 1_555 ? 10 AC1 19 ASN A 235 ? ASN A 234 . ? 1_555 ? 11 AC1 19 ILE A 257 ? ILE A 256 . ? 1_555 ? 12 AC1 19 PHD A 258 ? PHD A 257 . ? 1_555 ? 13 AC1 19 MG C . ? MG A 402 . ? 1_555 ? 14 AC1 19 HOH F . ? HOH A 510 . ? 1_555 ? 15 AC1 19 HOH F . ? HOH A 523 . ? 1_555 ? 16 AC1 19 HOH F . ? HOH A 532 . ? 1_555 ? 17 AC1 19 HOH F . ? HOH A 543 . ? 1_555 ? 18 AC1 19 HOH F . ? HOH A 565 . ? 1_555 ? 19 AC1 19 HOH F . ? HOH A 566 . ? 1_555 ? 20 AC2 5 ASN A 235 ? ASN A 234 . ? 1_555 ? 21 AC2 5 PHD A 258 ? PHD A 257 . ? 1_555 ? 22 AC2 5 ADP B . ? ADP A 401 . ? 1_555 ? 23 AC2 5 HOH F . ? HOH A 523 . ? 1_555 ? 24 AC2 5 HOH F . ? HOH A 543 . ? 1_555 ? 25 AC3 7 TYR A 79 ? TYR A 78 . ? 1_555 ? 26 AC3 7 HIS A 127 ? HIS A 126 . ? 1_555 ? 27 AC3 7 ARG A 128 ? ARG A 127 . ? 1_555 ? 28 AC3 7 LEU A 129 ? LEU A 128 . ? 1_555 ? 29 AC3 7 TYR A 143 ? TYR A 142 . ? 1_555 ? 30 AC3 7 SER A 156 ? SER A 155 . ? 1_555 ? 31 AC3 7 HIS A 186 ? HIS A 185 . ? 1_555 ? 32 AC4 3 ARG A 157 ? ARG A 156 . ? 1_555 ? 33 AC4 3 GLN A 183 ? GLN A 182 . ? 1_555 ? 34 AC4 3 ARG A 185 ? ARG A 184 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GYI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GYI _atom_sites.fract_transf_matrix[1][1] 0.008360 _atom_sites.fract_transf_matrix[1][2] 0.004826 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009653 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013931 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 LYS 3 2 2 LYS ALA A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 ASP 5 4 4 ASP ASP A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 MET 9 8 8 MET MET A . n A 1 10 ARG 10 9 9 ARG ARG A . n A 1 11 HIS 11 10 10 HIS HIS A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ASP 16 15 15 ASP ASP A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 VAL 23 22 22 VAL VAL A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 MET 25 24 24 MET MET A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 ASN 29 28 28 ASN ASN A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 SER 49 48 48 SER SER A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 MET 67 66 66 MET MET A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 HIS 88 87 87 HIS HIS A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 ARG 93 92 92 ARG ARG A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 ARG 102 101 101 ARG ARG A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 MET 112 111 111 MET MET A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 HIS 127 126 126 HIS HIS A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 ARG 131 130 130 ARG ARG A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 LYS 138 137 137 LYS ALA A . n A 1 139 ALA 139 138 ? ? ? A . n A 1 140 ASN 140 139 ? ? ? A . n A 1 141 ARG 141 140 140 ARG ALA A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 TYR 143 142 142 TYR TYR A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 SER 148 147 147 SER SER A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 SER 151 150 150 SER SER A . n A 1 152 TRP 152 151 151 TRP TRP A . n A 1 153 MET 153 152 152 MET MET A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 ARG 157 156 156 ARG ARG A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 PHE 164 163 163 PHE PHE A . n A 1 165 ALA 165 164 164 ALA ALA A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 MET 167 166 166 MET MET A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 ALA 169 168 168 ALA ALA A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 TYR 171 170 170 TYR TYR A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 PRO 176 175 175 PRO PRO A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 PRO 178 177 177 PRO PRO A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 PRO 180 179 179 PRO PRO A . n A 1 181 ILE 181 180 180 ILE ILE A . n A 1 182 ALA 182 181 181 ALA ALA A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 SER 184 183 183 SER SER A . n A 1 185 ARG 185 184 184 ARG ARG A . n A 1 186 HIS 186 185 185 HIS HIS A . n A 1 187 THR 187 186 186 THR THR A . n A 1 188 ILE 188 187 187 ILE ILE A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 MET 190 189 189 MET MET A . n A 1 191 SER 191 190 190 SER SER A . n A 1 192 LEU 192 191 191 LEU LEU A . n A 1 193 VAL 193 192 192 VAL VAL A . n A 1 194 ASP 194 193 193 ASP ASP A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 PRO 197 196 196 PRO PRO A . n A 1 198 MET 198 197 197 MET MET A . n A 1 199 ARG 199 198 198 ARG ARG A . n A 1 200 GLN 200 199 199 GLN GLN A . n A 1 201 VAL 201 200 200 VAL VAL A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 SER 203 202 202 SER SER A . n A 1 204 VAL 204 203 203 VAL VAL A . n A 1 205 PRO 205 204 204 PRO PRO A . n A 1 206 ASP 206 205 205 ASP ASP A . n A 1 207 PRO 207 206 206 PRO PRO A . n A 1 208 ALA 208 207 207 ALA ALA A . n A 1 209 SER 209 208 208 SER SER A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 TYR 211 210 210 TYR TYR A . n A 1 212 ALA 212 211 211 ALA ALA A . n A 1 213 ASP 213 212 212 ASP ASP A . n A 1 214 LEU 214 213 213 LEU LEU A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 ALA 216 215 215 ALA ALA A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 ILE 218 217 217 ILE ILE A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 ARG 220 219 219 ARG ARG A . n A 1 221 LEU 221 220 220 LEU LEU A . n A 1 222 ALA 222 221 221 ALA ALA A . n A 1 223 LYS 223 222 222 LYS LYS A . n A 1 224 HIS 224 223 223 HIS HIS A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 LEU 226 225 225 LEU LEU A . n A 1 227 ILE 227 226 226 ILE ILE A . n A 1 228 HIS 228 227 227 HIS HIS A . n A 1 229 GLY 229 228 228 GLY GLY A . n A 1 230 ASP 230 229 229 ASP ASP A . n A 1 231 PHE 231 230 230 PHE PHE A . n A 1 232 ASN 232 231 231 ASN ASN A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 PHE 234 233 233 PHE PHE A . n A 1 235 ASN 235 234 234 ASN ASN A . n A 1 236 ILE 236 235 235 ILE ILE A . n A 1 237 LEU 237 236 236 LEU LEU A . n A 1 238 ILE 238 237 237 ILE ILE A . n A 1 239 ARG 239 238 238 ARG ARG A . n A 1 240 GLU 240 239 239 GLU GLU A . n A 1 241 GLU 241 240 240 GLU GLU A . n A 1 242 LYS 242 241 241 LYS LYS A . n A 1 243 ASP 243 242 242 ASP ASP A . n A 1 244 ALA 244 243 243 ALA ALA A . n A 1 245 GLU 245 244 244 GLU GLU A . n A 1 246 ASP 246 245 245 ASP ASP A . n A 1 247 PRO 247 246 246 PRO PRO A . n A 1 248 SER 248 247 247 SER SER A . n A 1 249 SER 249 248 248 SER SER A . n A 1 250 ILE 250 249 249 ILE ILE A . n A 1 251 THR 251 250 250 THR THR A . n A 1 252 LEU 252 251 251 LEU LEU A . n A 1 253 THR 253 252 252 THR THR A . n A 1 254 PRO 254 253 253 PRO PRO A . n A 1 255 ILE 255 254 254 ILE ILE A . n A 1 256 ILE 256 255 255 ILE ILE A . n A 1 257 ILE 257 256 256 ILE ILE A . n A 1 258 PHD 258 257 257 PHD PHD A . n A 1 259 PHE 259 258 258 PHE PHE A . n A 1 260 PRO 260 259 259 PRO PRO A . n A 1 261 GLN 261 260 260 GLN GLN A . n A 1 262 MET 262 261 261 MET MET A . n A 1 263 VAL 263 262 262 VAL VAL A . n A 1 264 SER 264 263 263 SER SER A . n A 1 265 MET 265 264 264 MET MET A . n A 1 266 ASP 266 265 265 ASP ASP A . n A 1 267 HIS 267 266 266 HIS HIS A . n A 1 268 PRO 268 267 267 PRO PRO A . n A 1 269 ASN 269 268 268 ASN ASN A . n A 1 270 ALA 270 269 269 ALA ALA A . n A 1 271 GLU 271 270 270 GLU GLU A . n A 1 272 MET 272 271 271 MET MET A . n A 1 273 TYR 273 272 272 TYR TYR A . n A 1 274 PHE 274 273 273 PHE PHE A . n A 1 275 ASP 275 274 274 ASP ASP A . n A 1 276 ARG 276 275 275 ARG ARG A . n A 1 277 ASP 277 276 276 ASP ASP A . n A 1 278 VAL 278 277 277 VAL VAL A . n A 1 279 GLN 279 278 278 GLN GLN A . n A 1 280 CYS 280 279 279 CYS CYS A . n A 1 281 ILE 281 280 280 ILE ILE A . n A 1 282 LYS 282 281 281 LYS LYS A . n A 1 283 ARG 283 282 282 ARG ARG A . n A 1 284 PHE 284 283 283 PHE PHE A . n A 1 285 PHE 285 284 284 PHE PHE A . n A 1 286 GLU 286 285 285 GLU GLU A . n A 1 287 ARG 287 286 286 ARG ARG A . n A 1 288 ARG 288 287 287 ARG ARG A . n A 1 289 PHE 289 288 288 PHE PHE A . n A 1 290 HIS 290 289 289 HIS HIS A . n A 1 291 PHE 291 290 290 PHE PHE A . n A 1 292 VAL 292 291 291 VAL VAL A . n A 1 293 SER 293 292 292 SER SER A . n A 1 294 THR 294 293 293 THR THR A . n A 1 295 THR 295 294 294 THR THR A . n A 1 296 PRO 296 295 295 PRO PRO A . n A 1 297 GLY 297 296 296 GLY GLY A . n A 1 298 PRO 298 297 297 PRO PRO A . n A 1 299 PHE 299 298 298 PHE PHE A . n A 1 300 TYR 300 299 299 TYR TYR A . n A 1 301 LYS 301 300 300 LYS LYS A . n A 1 302 ASP 302 301 301 ASP ASP A . n A 1 303 ALA 303 302 302 ALA ALA A . n A 1 304 LYS 304 303 303 LYS LYS A . n A 1 305 LYS 305 304 304 LYS LYS A . n A 1 306 THR 306 305 305 THR THR A . n A 1 307 VAL 307 306 306 VAL VAL A . n A 1 308 GLY 308 307 307 GLY GLY A . n A 1 309 LYS 309 308 308 LYS LYS A . n A 1 310 ASP 310 309 309 ASP ASP A . n A 1 311 GLY 311 310 310 GLY GLY A . n A 1 312 ALA 312 311 311 ALA ALA A . n A 1 313 LYS 313 312 312 LYS LYS A . n A 1 314 ARG 314 313 313 ARG ARG A . n A 1 315 LEU 315 314 314 LEU LEU A . n A 1 316 ASP 316 315 315 ASP ASP A . n A 1 317 ALA 317 316 316 ALA ALA A . n A 1 318 ALA 318 317 317 ALA ALA A . n A 1 319 LEU 319 318 318 LEU LEU A . n A 1 320 GLU 320 319 319 GLU GLU A . n A 1 321 ALA 321 320 320 ALA ALA A . n A 1 322 SER 322 321 321 SER SER A . n A 1 323 GLY 323 322 322 GLY GLY A . n A 1 324 PHE 324 323 323 PHE PHE A . n A 1 325 THR 325 324 324 THR THR A . n A 1 326 LYS 326 325 325 LYS LYS A . n A 1 327 LYS 327 326 326 LYS LYS A . n A 1 328 MET 328 327 327 MET MET A . n A 1 329 ALA 329 328 328 ALA ALA A . n A 1 330 LYS 330 329 329 LYS LYS A . n A 1 331 ASP 331 330 330 ASP ASP A . n A 1 332 LEU 332 331 331 LEU LEU A . n A 1 333 GLU 333 332 332 GLU GLU A . n A 1 334 ALA 334 333 333 ALA ALA A . n A 1 335 ALA 335 334 334 ALA ALA A . n A 1 336 ILE 336 335 335 ILE ILE A . n A 1 337 ARG 337 336 336 ARG ARG A . n A 1 338 GLU 338 337 337 GLU GLU A . n A 1 339 GLN 339 338 338 GLN GLN A . n A 1 340 GLN 340 339 339 GLN GLN A . n A 1 341 GLU 341 340 340 GLU GLU A . n A 1 342 SER 342 341 341 SER SER A . n A 1 343 ARG 343 342 342 ARG ARG A . n A 1 344 ASN 344 343 ? ? ? A . n A 1 345 ASP 345 344 ? ? ? A . n A 1 346 GLU 346 345 ? ? ? A . n A 1 347 GLU 347 346 ? ? ? A . n A 1 348 ASP 348 347 ? ? ? A . n A 1 349 SER 349 348 ? ? ? A . n A 1 350 ASP 350 349 ? ? ? A . n A 1 351 ASP 351 350 ? ? ? A . n A 1 352 TYR 352 351 ? ? ? A . n A 1 353 GLU 353 352 ? ? ? A . n A 1 354 GLU 354 353 ? ? ? A . n A 1 355 ASP 355 354 ? ? ? A . n A 1 356 SER 356 355 ? ? ? A . n A 1 357 ASP 357 356 ? ? ? A . n A 1 358 LYS 358 357 ? ? ? A . n A 1 359 GLU 359 358 ? ? ? A . n A 1 360 LYS 360 359 ? ? ? A . n A 1 361 ALA 361 360 ? ? ? A . n A 1 362 SER 362 361 ? ? ? A . n A 1 363 ASN 363 362 ? ? ? A . n A 1 364 GLU 364 363 ? ? ? A . n A 1 365 ASP 365 364 ? ? ? A . n A 1 366 THR 366 365 ? ? ? A . n A 1 367 ASP 367 366 ? ? ? A . n A 1 368 VAL 368 367 ? ? ? A . n A 1 369 ASP 369 368 ? ? ? A . n A 1 370 ASP 370 369 ? ? ? A . n A 1 371 GLY 371 370 ? ? ? A . n A 1 372 ARG 372 371 ? ? ? A . n A 1 373 LEU 373 372 ? ? ? A . n A 1 374 GLN 374 373 ? ? ? A . n A 1 375 VAL 375 374 ? ? ? A . n A 1 376 ILE 376 375 ? ? ? A . n A 1 377 GLY 377 376 ? ? ? A . n A 1 378 ASP 378 377 ? ? ? A . n A 1 379 HIS 379 378 ? ? ? A . n A 1 380 VAL 380 379 ? ? ? A . n A 1 381 GLN 381 380 ? ? ? A . n A 1 382 LEU 382 381 ? ? ? A . n A 1 383 GLY 383 382 ? ? ? A . n A 1 384 THR 384 383 ? ? ? A . n A 1 385 GLU 385 384 ? ? ? A . n A 1 386 GLY 386 385 ? ? ? A . n A 1 387 ASP 387 386 ? ? ? A . n A 1 388 LEU 388 387 ? ? ? A . n A 1 389 LYS 389 388 ? ? ? A . n A 1 390 LYS 390 389 ? ? ? A . n A 1 391 LEU 391 390 ? ? ? A . n A 1 392 THR 392 391 ? ? ? A . n A 1 393 ILE 393 392 ? ? ? A . n A 1 394 ASN 394 393 ? ? ? A . n A 1 395 ASP 395 394 ? ? ? A . n A 1 396 GLY 396 395 ? ? ? A . n A 1 397 THR 397 396 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 401 1 ADP ADP A . C 3 MG 1 402 1 MG MG A . D 4 EDO 1 403 1 EDO EDO A . E 4 EDO 1 404 2 EDO EDO A . F 5 HOH 1 501 1 HOH HOH A . F 5 HOH 2 502 2 HOH HOH A . F 5 HOH 3 503 3 HOH HOH A . F 5 HOH 4 504 4 HOH HOH A . F 5 HOH 5 505 5 HOH HOH A . F 5 HOH 6 506 6 HOH HOH A . F 5 HOH 7 507 7 HOH HOH A . F 5 HOH 8 508 8 HOH HOH A . F 5 HOH 9 509 9 HOH HOH A . F 5 HOH 10 510 10 HOH HOH A . F 5 HOH 11 511 11 HOH HOH A . F 5 HOH 12 512 13 HOH HOH A . F 5 HOH 13 513 14 HOH HOH A . F 5 HOH 14 514 15 HOH HOH A . F 5 HOH 15 515 16 HOH HOH A . F 5 HOH 16 516 17 HOH HOH A . F 5 HOH 17 517 18 HOH HOH A . F 5 HOH 18 518 19 HOH HOH A . F 5 HOH 19 519 20 HOH HOH A . F 5 HOH 20 520 21 HOH HOH A . F 5 HOH 21 521 22 HOH HOH A . F 5 HOH 22 522 23 HOH HOH A . F 5 HOH 23 523 24 HOH HOH A . F 5 HOH 24 524 25 HOH HOH A . F 5 HOH 25 525 26 HOH HOH A . F 5 HOH 26 526 27 HOH HOH A . F 5 HOH 27 527 28 HOH HOH A . F 5 HOH 28 528 31 HOH HOH A . F 5 HOH 29 529 32 HOH HOH A . F 5 HOH 30 530 33 HOH HOH A . F 5 HOH 31 531 34 HOH HOH A . F 5 HOH 32 532 35 HOH HOH A . F 5 HOH 33 533 36 HOH HOH A . F 5 HOH 34 534 37 HOH HOH A . F 5 HOH 35 535 38 HOH HOH A . F 5 HOH 36 536 39 HOH HOH A . F 5 HOH 37 537 40 HOH HOH A . F 5 HOH 38 538 42 HOH HOH A . F 5 HOH 39 539 43 HOH HOH A . F 5 HOH 40 540 44 HOH HOH A . F 5 HOH 41 541 45 HOH HOH A . F 5 HOH 42 542 46 HOH HOH A . F 5 HOH 43 543 47 HOH HOH A . F 5 HOH 44 544 48 HOH HOH A . F 5 HOH 45 545 49 HOH HOH A . F 5 HOH 46 546 50 HOH HOH A . F 5 HOH 47 547 52 HOH HOH A . F 5 HOH 48 548 55 HOH HOH A . F 5 HOH 49 549 56 HOH HOH A . F 5 HOH 50 550 57 HOH HOH A . F 5 HOH 51 551 58 HOH HOH A . F 5 HOH 52 552 59 HOH HOH A . F 5 HOH 53 553 60 HOH HOH A . F 5 HOH 54 554 61 HOH HOH A . F 5 HOH 55 555 62 HOH HOH A . F 5 HOH 56 556 63 HOH HOH A . F 5 HOH 57 557 64 HOH HOH A . F 5 HOH 58 558 65 HOH HOH A . F 5 HOH 59 559 66 HOH HOH A . F 5 HOH 60 560 68 HOH HOH A . F 5 HOH 61 561 69 HOH HOH A . F 5 HOH 62 562 70 HOH HOH A . F 5 HOH 63 563 71 HOH HOH A . F 5 HOH 64 564 73 HOH HOH A . F 5 HOH 65 565 74 HOH HOH A . F 5 HOH 66 566 75 HOH HOH A . F 5 HOH 67 567 77 HOH HOH A . F 5 HOH 68 568 78 HOH HOH A . F 5 HOH 69 569 79 HOH HOH A . F 5 HOH 70 570 80 HOH HOH A . F 5 HOH 71 571 81 HOH HOH A . F 5 HOH 72 572 82 HOH HOH A . F 5 HOH 73 573 83 HOH HOH A . F 5 HOH 74 574 84 HOH HOH A . F 5 HOH 75 575 85 HOH HOH A . F 5 HOH 76 576 86 HOH HOH A . F 5 HOH 77 577 87 HOH HOH A . F 5 HOH 78 578 88 HOH HOH A . F 5 HOH 79 579 89 HOH HOH A . F 5 HOH 80 580 90 HOH HOH A . F 5 HOH 81 581 91 HOH HOH A . F 5 HOH 82 582 92 HOH HOH A . F 5 HOH 83 583 93 HOH HOH A . F 5 HOH 84 584 94 HOH HOH A . F 5 HOH 85 585 95 HOH HOH A . F 5 HOH 86 586 96 HOH HOH A . F 5 HOH 87 587 97 HOH HOH A . F 5 HOH 88 588 98 HOH HOH A . F 5 HOH 89 589 99 HOH HOH A . F 5 HOH 90 590 100 HOH HOH A . F 5 HOH 91 591 102 HOH HOH A . F 5 HOH 92 592 103 HOH HOH A . F 5 HOH 93 593 104 HOH HOH A . F 5 HOH 94 594 105 HOH HOH A . F 5 HOH 95 595 106 HOH HOH A . F 5 HOH 96 596 108 HOH HOH A . F 5 HOH 97 597 109 HOH HOH A . F 5 HOH 98 598 111 HOH HOH A . F 5 HOH 99 599 112 HOH HOH A . F 5 HOH 100 600 113 HOH HOH A . F 5 HOH 101 601 114 HOH HOH A . F 5 HOH 102 602 115 HOH HOH A . F 5 HOH 103 603 116 HOH HOH A . F 5 HOH 104 604 117 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PHD _pdbx_struct_mod_residue.label_seq_id 258 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PHD _pdbx_struct_mod_residue.auth_seq_id 257 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASP _pdbx_struct_mod_residue.details 'ASPARTYL PHOSPHATE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 235 ? A ASN 234 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 OD1 ? A PHD 258 ? A PHD 257 ? 1_555 106.5 ? 2 OD1 ? A ASN 235 ? A ASN 234 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O1A ? B ADP . ? A ADP 401 ? 1_555 94.5 ? 3 OD1 ? A PHD 258 ? A PHD 257 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O1A ? B ADP . ? A ADP 401 ? 1_555 95.4 ? 4 OD1 ? A ASN 235 ? A ASN 234 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O2B ? B ADP . ? A ADP 401 ? 1_555 165.7 ? 5 OD1 ? A PHD 258 ? A PHD 257 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O2B ? B ADP . ? A ADP 401 ? 1_555 87.0 ? 6 O1A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O2B ? B ADP . ? A ADP 401 ? 1_555 79.1 ? 7 OD1 ? A ASN 235 ? A ASN 234 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 523 ? 1_555 81.7 ? 8 OD1 ? A PHD 258 ? A PHD 257 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 523 ? 1_555 171.7 ? 9 O1A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 523 ? 1_555 85.2 ? 10 O2B ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 523 ? 1_555 85.0 ? 11 OD1 ? A ASN 235 ? A ASN 234 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 543 ? 1_555 96.4 ? 12 OD1 ? A PHD 258 ? A PHD 257 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 543 ? 1_555 92.3 ? 13 O1A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 543 ? 1_555 164.3 ? 14 O2B ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 543 ? 1_555 87.6 ? 15 O ? F HOH . ? A HOH 523 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 543 ? 1_555 85.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-12-12 3 'Structure model' 1 2 2012-12-26 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 42.5519 15.2265 -32.8661 0.3166 0.5805 0.3579 0.2759 0.0208 -0.0774 5.6126 4.3229 3.0259 -1.9815 -1.2259 0.7070 0.0917 0.0143 -0.0584 0.2885 0.0902 -0.5962 -0.0637 0.1795 0.4959 'X-RAY DIFFRACTION' 2 ? refined 22.3474 20.1477 -27.6501 0.2729 0.1112 0.2629 0.0984 0.0020 -0.0228 2.9452 0.2262 2.7613 0.4282 0.7800 0.1707 0.0418 -0.0397 0.0069 0.1853 -0.0141 0.0137 -0.1478 0.2336 0.2138 'X-RAY DIFFRACTION' 3 ? refined 3.6098 21.7678 -17.4982 0.2109 0.2249 0.2786 -0.0442 0.0197 0.0173 3.3677 1.7005 3.3399 -0.0761 -0.3678 0.2757 0.1160 0.0329 -0.0925 -0.3690 -0.0047 0.3044 0.1289 0.0965 -0.5625 'X-RAY DIFFRACTION' 4 ? refined 23.1423 20.1775 -11.1522 0.3803 0.3754 0.3480 0.0525 0.0515 -0.0548 8.3609 4.7206 8.7872 -5.7383 1.9543 -1.5331 -0.4425 0.5256 -0.0242 -0.6635 0.4236 0.2789 1.7319 -0.2513 -0.7039 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 76 '( CHAIN A AND RESID 2:76 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 77 A 176 '( CHAIN A AND RESID 77:176 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 177 A 321 '( CHAIN A AND RESID 177:321 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 322 A 341 '( CHAIN A AND RESID 322:341 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' '(phenix.automr)' ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_entry_details.entry_id 4GYI _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE AS PROVIDED, INCLUDING RESIDUES 1-23 IS THE CORRECT SEQUENCE OF THE PROTEIN. THE UNIPROT DATABASE HAVE BEEN NOTIFIED OF THE ERROR ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 107 ? B O A HOH 509 ? ? 2.11 2 1 O A HOH 533 ? ? O A HOH 584 ? ? 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 28 ? ? -90.62 -65.07 2 1 ARG A 184 ? ? 54.32 -119.08 3 1 ASP A 229 ? ? -147.71 47.31 4 1 PHD A 257 ? ? 78.16 83.44 5 1 ASP A 309 ? ? 61.08 -141.24 6 1 ALA A 311 ? ? -48.49 104.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 2 ? CG ? A LYS 3 CG 2 1 Y 1 A LYS 2 ? CD ? A LYS 3 CD 3 1 Y 1 A LYS 2 ? CE ? A LYS 3 CE 4 1 Y 1 A LYS 2 ? NZ ? A LYS 3 NZ 5 1 Y 1 A ASN 28 ? CG ? A ASN 29 CG 6 1 Y 1 A ASN 28 ? OD1 ? A ASN 29 OD1 7 1 Y 1 A ASN 28 ? ND2 ? A ASN 29 ND2 8 1 Y 1 A LYS 67 ? CG ? A LYS 68 CG 9 1 Y 1 A LYS 67 ? CD ? A LYS 68 CD 10 1 Y 1 A LYS 67 ? CE ? A LYS 68 CE 11 1 Y 1 A LYS 67 ? NZ ? A LYS 68 NZ 12 1 Y 1 A LYS 137 ? CG ? A LYS 138 CG 13 1 Y 1 A LYS 137 ? CD ? A LYS 138 CD 14 1 Y 1 A LYS 137 ? CE ? A LYS 138 CE 15 1 Y 1 A LYS 137 ? NZ ? A LYS 138 NZ 16 1 Y 1 A ARG 140 ? CG ? A ARG 141 CG 17 1 Y 1 A ARG 140 ? CD ? A ARG 141 CD 18 1 Y 1 A ARG 140 ? NE ? A ARG 141 NE 19 1 Y 1 A ARG 140 ? CZ ? A ARG 141 CZ 20 1 Y 1 A ARG 140 ? NH1 ? A ARG 141 NH1 21 1 Y 1 A ARG 140 ? NH2 ? A ARG 141 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 0 ? A SER 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A ALA 138 ? A ALA 139 4 1 Y 1 A ASN 139 ? A ASN 140 5 1 Y 1 A ASN 343 ? A ASN 344 6 1 Y 1 A ASP 344 ? A ASP 345 7 1 Y 1 A GLU 345 ? A GLU 346 8 1 Y 1 A GLU 346 ? A GLU 347 9 1 Y 1 A ASP 347 ? A ASP 348 10 1 Y 1 A SER 348 ? A SER 349 11 1 Y 1 A ASP 349 ? A ASP 350 12 1 Y 1 A ASP 350 ? A ASP 351 13 1 Y 1 A TYR 351 ? A TYR 352 14 1 Y 1 A GLU 352 ? A GLU 353 15 1 Y 1 A GLU 353 ? A GLU 354 16 1 Y 1 A ASP 354 ? A ASP 355 17 1 Y 1 A SER 355 ? A SER 356 18 1 Y 1 A ASP 356 ? A ASP 357 19 1 Y 1 A LYS 357 ? A LYS 358 20 1 Y 1 A GLU 358 ? A GLU 359 21 1 Y 1 A LYS 359 ? A LYS 360 22 1 Y 1 A ALA 360 ? A ALA 361 23 1 Y 1 A SER 361 ? A SER 362 24 1 Y 1 A ASN 362 ? A ASN 363 25 1 Y 1 A GLU 363 ? A GLU 364 26 1 Y 1 A ASP 364 ? A ASP 365 27 1 Y 1 A THR 365 ? A THR 366 28 1 Y 1 A ASP 366 ? A ASP 367 29 1 Y 1 A VAL 367 ? A VAL 368 30 1 Y 1 A ASP 368 ? A ASP 369 31 1 Y 1 A ASP 369 ? A ASP 370 32 1 Y 1 A GLY 370 ? A GLY 371 33 1 Y 1 A ARG 371 ? A ARG 372 34 1 Y 1 A LEU 372 ? A LEU 373 35 1 Y 1 A GLN 373 ? A GLN 374 36 1 Y 1 A VAL 374 ? A VAL 375 37 1 Y 1 A ILE 375 ? A ILE 376 38 1 Y 1 A GLY 376 ? A GLY 377 39 1 Y 1 A ASP 377 ? A ASP 378 40 1 Y 1 A HIS 378 ? A HIS 379 41 1 Y 1 A VAL 379 ? A VAL 380 42 1 Y 1 A GLN 380 ? A GLN 381 43 1 Y 1 A LEU 381 ? A LEU 382 44 1 Y 1 A GLY 382 ? A GLY 383 45 1 Y 1 A THR 383 ? A THR 384 46 1 Y 1 A GLU 384 ? A GLU 385 47 1 Y 1 A GLY 385 ? A GLY 386 48 1 Y 1 A ASP 386 ? A ASP 387 49 1 Y 1 A LEU 387 ? A LEU 388 50 1 Y 1 A LYS 388 ? A LYS 389 51 1 Y 1 A LYS 389 ? A LYS 390 52 1 Y 1 A LEU 390 ? A LEU 391 53 1 Y 1 A THR 391 ? A THR 392 54 1 Y 1 A ILE 392 ? A ILE 393 55 1 Y 1 A ASN 393 ? A ASN 394 56 1 Y 1 A ASP 394 ? A ASP 395 57 1 Y 1 A GLY 395 ? A GLY 396 58 1 Y 1 A THR 396 ? A THR 397 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 EDO C1 C N N 130 EDO O1 O N N 131 EDO C2 C N N 132 EDO O2 O N N 133 EDO H11 H N N 134 EDO H12 H N N 135 EDO HO1 H N N 136 EDO H21 H N N 137 EDO H22 H N N 138 EDO HO2 H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 LEU N N N N 235 LEU CA C N S 236 LEU C C N N 237 LEU O O N N 238 LEU CB C N N 239 LEU CG C N N 240 LEU CD1 C N N 241 LEU CD2 C N N 242 LEU OXT O N N 243 LEU H H N N 244 LEU H2 H N N 245 LEU HA H N N 246 LEU HB2 H N N 247 LEU HB3 H N N 248 LEU HG H N N 249 LEU HD11 H N N 250 LEU HD12 H N N 251 LEU HD13 H N N 252 LEU HD21 H N N 253 LEU HD22 H N N 254 LEU HD23 H N N 255 LEU HXT H N N 256 LYS N N N N 257 LYS CA C N S 258 LYS C C N N 259 LYS O O N N 260 LYS CB C N N 261 LYS CG C N N 262 LYS CD C N N 263 LYS CE C N N 264 LYS NZ N N N 265 LYS OXT O N N 266 LYS H H N N 267 LYS H2 H N N 268 LYS HA H N N 269 LYS HB2 H N N 270 LYS HB3 H N N 271 LYS HG2 H N N 272 LYS HG3 H N N 273 LYS HD2 H N N 274 LYS HD3 H N N 275 LYS HE2 H N N 276 LYS HE3 H N N 277 LYS HZ1 H N N 278 LYS HZ2 H N N 279 LYS HZ3 H N N 280 LYS HXT H N N 281 MET N N N N 282 MET CA C N S 283 MET C C N N 284 MET O O N N 285 MET CB C N N 286 MET CG C N N 287 MET SD S N N 288 MET CE C N N 289 MET OXT O N N 290 MET H H N N 291 MET H2 H N N 292 MET HA H N N 293 MET HB2 H N N 294 MET HB3 H N N 295 MET HG2 H N N 296 MET HG3 H N N 297 MET HE1 H N N 298 MET HE2 H N N 299 MET HE3 H N N 300 MET HXT H N N 301 MG MG MG N N 302 PHD N N N N 303 PHD CA C N S 304 PHD C C N N 305 PHD O O N N 306 PHD CB C N N 307 PHD CG C N N 308 PHD OD1 O N N 309 PHD OD2 O N N 310 PHD P P N N 311 PHD OP1 O N N 312 PHD OP2 O N N 313 PHD OP3 O N N 314 PHD OXT O N N 315 PHD H2 H N N 316 PHD H H N N 317 PHD HA H N N 318 PHD HB2 H N N 319 PHD HB3 H N N 320 PHD H2O H N N 321 PHD H3O H N N 322 PHD HXT H N N 323 PHE N N N N 324 PHE CA C N S 325 PHE C C N N 326 PHE O O N N 327 PHE CB C N N 328 PHE CG C Y N 329 PHE CD1 C Y N 330 PHE CD2 C Y N 331 PHE CE1 C Y N 332 PHE CE2 C Y N 333 PHE CZ C Y N 334 PHE OXT O N N 335 PHE H H N N 336 PHE H2 H N N 337 PHE HA H N N 338 PHE HB2 H N N 339 PHE HB3 H N N 340 PHE HD1 H N N 341 PHE HD2 H N N 342 PHE HE1 H N N 343 PHE HE2 H N N 344 PHE HZ H N N 345 PHE HXT H N N 346 PRO N N N N 347 PRO CA C N S 348 PRO C C N N 349 PRO O O N N 350 PRO CB C N N 351 PRO CG C N N 352 PRO CD C N N 353 PRO OXT O N N 354 PRO H H N N 355 PRO HA H N N 356 PRO HB2 H N N 357 PRO HB3 H N N 358 PRO HG2 H N N 359 PRO HG3 H N N 360 PRO HD2 H N N 361 PRO HD3 H N N 362 PRO HXT H N N 363 SER N N N N 364 SER CA C N S 365 SER C C N N 366 SER O O N N 367 SER CB C N N 368 SER OG O N N 369 SER OXT O N N 370 SER H H N N 371 SER H2 H N N 372 SER HA H N N 373 SER HB2 H N N 374 SER HB3 H N N 375 SER HG H N N 376 SER HXT H N N 377 THR N N N N 378 THR CA C N S 379 THR C C N N 380 THR O O N N 381 THR CB C N R 382 THR OG1 O N N 383 THR CG2 C N N 384 THR OXT O N N 385 THR H H N N 386 THR H2 H N N 387 THR HA H N N 388 THR HB H N N 389 THR HG1 H N N 390 THR HG21 H N N 391 THR HG22 H N N 392 THR HG23 H N N 393 THR HXT H N N 394 TRP N N N N 395 TRP CA C N S 396 TRP C C N N 397 TRP O O N N 398 TRP CB C N N 399 TRP CG C Y N 400 TRP CD1 C Y N 401 TRP CD2 C Y N 402 TRP NE1 N Y N 403 TRP CE2 C Y N 404 TRP CE3 C Y N 405 TRP CZ2 C Y N 406 TRP CZ3 C Y N 407 TRP CH2 C Y N 408 TRP OXT O N N 409 TRP H H N N 410 TRP H2 H N N 411 TRP HA H N N 412 TRP HB2 H N N 413 TRP HB3 H N N 414 TRP HD1 H N N 415 TRP HE1 H N N 416 TRP HE3 H N N 417 TRP HZ2 H N N 418 TRP HZ3 H N N 419 TRP HH2 H N N 420 TRP HXT H N N 421 TYR N N N N 422 TYR CA C N S 423 TYR C C N N 424 TYR O O N N 425 TYR CB C N N 426 TYR CG C Y N 427 TYR CD1 C Y N 428 TYR CD2 C Y N 429 TYR CE1 C Y N 430 TYR CE2 C Y N 431 TYR CZ C Y N 432 TYR OH O N N 433 TYR OXT O N N 434 TYR H H N N 435 TYR H2 H N N 436 TYR HA H N N 437 TYR HB2 H N N 438 TYR HB3 H N N 439 TYR HD1 H N N 440 TYR HD2 H N N 441 TYR HE1 H N N 442 TYR HE2 H N N 443 TYR HH H N N 444 TYR HXT H N N 445 VAL N N N N 446 VAL CA C N S 447 VAL C C N N 448 VAL O O N N 449 VAL CB C N N 450 VAL CG1 C N N 451 VAL CG2 C N N 452 VAL OXT O N N 453 VAL H H N N 454 VAL H2 H N N 455 VAL HA H N N 456 VAL HB H N N 457 VAL HG11 H N N 458 VAL HG12 H N N 459 VAL HG13 H N N 460 VAL HG21 H N N 461 VAL HG22 H N N 462 VAL HG23 H N N 463 VAL HXT H N N 464 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 EDO C1 O1 sing N N 127 EDO C1 C2 sing N N 128 EDO C1 H11 sing N N 129 EDO C1 H12 sing N N 130 EDO O1 HO1 sing N N 131 EDO C2 O2 sing N N 132 EDO C2 H21 sing N N 133 EDO C2 H22 sing N N 134 EDO O2 HO2 sing N N 135 GLN N CA sing N N 136 GLN N H sing N N 137 GLN N H2 sing N N 138 GLN CA C sing N N 139 GLN CA CB sing N N 140 GLN CA HA sing N N 141 GLN C O doub N N 142 GLN C OXT sing N N 143 GLN CB CG sing N N 144 GLN CB HB2 sing N N 145 GLN CB HB3 sing N N 146 GLN CG CD sing N N 147 GLN CG HG2 sing N N 148 GLN CG HG3 sing N N 149 GLN CD OE1 doub N N 150 GLN CD NE2 sing N N 151 GLN NE2 HE21 sing N N 152 GLN NE2 HE22 sing N N 153 GLN OXT HXT sing N N 154 GLU N CA sing N N 155 GLU N H sing N N 156 GLU N H2 sing N N 157 GLU CA C sing N N 158 GLU CA CB sing N N 159 GLU CA HA sing N N 160 GLU C O doub N N 161 GLU C OXT sing N N 162 GLU CB CG sing N N 163 GLU CB HB2 sing N N 164 GLU CB HB3 sing N N 165 GLU CG CD sing N N 166 GLU CG HG2 sing N N 167 GLU CG HG3 sing N N 168 GLU CD OE1 doub N N 169 GLU CD OE2 sing N N 170 GLU OE2 HE2 sing N N 171 GLU OXT HXT sing N N 172 GLY N CA sing N N 173 GLY N H sing N N 174 GLY N H2 sing N N 175 GLY CA C sing N N 176 GLY CA HA2 sing N N 177 GLY CA HA3 sing N N 178 GLY C O doub N N 179 GLY C OXT sing N N 180 GLY OXT HXT sing N N 181 HIS N CA sing N N 182 HIS N H sing N N 183 HIS N H2 sing N N 184 HIS CA C sing N N 185 HIS CA CB sing N N 186 HIS CA HA sing N N 187 HIS C O doub N N 188 HIS C OXT sing N N 189 HIS CB CG sing N N 190 HIS CB HB2 sing N N 191 HIS CB HB3 sing N N 192 HIS CG ND1 sing Y N 193 HIS CG CD2 doub Y N 194 HIS ND1 CE1 doub Y N 195 HIS ND1 HD1 sing N N 196 HIS CD2 NE2 sing Y N 197 HIS CD2 HD2 sing N N 198 HIS CE1 NE2 sing Y N 199 HIS CE1 HE1 sing N N 200 HIS NE2 HE2 sing N N 201 HIS OXT HXT sing N N 202 HOH O H1 sing N N 203 HOH O H2 sing N N 204 ILE N CA sing N N 205 ILE N H sing N N 206 ILE N H2 sing N N 207 ILE CA C sing N N 208 ILE CA CB sing N N 209 ILE CA HA sing N N 210 ILE C O doub N N 211 ILE C OXT sing N N 212 ILE CB CG1 sing N N 213 ILE CB CG2 sing N N 214 ILE CB HB sing N N 215 ILE CG1 CD1 sing N N 216 ILE CG1 HG12 sing N N 217 ILE CG1 HG13 sing N N 218 ILE CG2 HG21 sing N N 219 ILE CG2 HG22 sing N N 220 ILE CG2 HG23 sing N N 221 ILE CD1 HD11 sing N N 222 ILE CD1 HD12 sing N N 223 ILE CD1 HD13 sing N N 224 ILE OXT HXT sing N N 225 LEU N CA sing N N 226 LEU N H sing N N 227 LEU N H2 sing N N 228 LEU CA C sing N N 229 LEU CA CB sing N N 230 LEU CA HA sing N N 231 LEU C O doub N N 232 LEU C OXT sing N N 233 LEU CB CG sing N N 234 LEU CB HB2 sing N N 235 LEU CB HB3 sing N N 236 LEU CG CD1 sing N N 237 LEU CG CD2 sing N N 238 LEU CG HG sing N N 239 LEU CD1 HD11 sing N N 240 LEU CD1 HD12 sing N N 241 LEU CD1 HD13 sing N N 242 LEU CD2 HD21 sing N N 243 LEU CD2 HD22 sing N N 244 LEU CD2 HD23 sing N N 245 LEU OXT HXT sing N N 246 LYS N CA sing N N 247 LYS N H sing N N 248 LYS N H2 sing N N 249 LYS CA C sing N N 250 LYS CA CB sing N N 251 LYS CA HA sing N N 252 LYS C O doub N N 253 LYS C OXT sing N N 254 LYS CB CG sing N N 255 LYS CB HB2 sing N N 256 LYS CB HB3 sing N N 257 LYS CG CD sing N N 258 LYS CG HG2 sing N N 259 LYS CG HG3 sing N N 260 LYS CD CE sing N N 261 LYS CD HD2 sing N N 262 LYS CD HD3 sing N N 263 LYS CE NZ sing N N 264 LYS CE HE2 sing N N 265 LYS CE HE3 sing N N 266 LYS NZ HZ1 sing N N 267 LYS NZ HZ2 sing N N 268 LYS NZ HZ3 sing N N 269 LYS OXT HXT sing N N 270 MET N CA sing N N 271 MET N H sing N N 272 MET N H2 sing N N 273 MET CA C sing N N 274 MET CA CB sing N N 275 MET CA HA sing N N 276 MET C O doub N N 277 MET C OXT sing N N 278 MET CB CG sing N N 279 MET CB HB2 sing N N 280 MET CB HB3 sing N N 281 MET CG SD sing N N 282 MET CG HG2 sing N N 283 MET CG HG3 sing N N 284 MET SD CE sing N N 285 MET CE HE1 sing N N 286 MET CE HE2 sing N N 287 MET CE HE3 sing N N 288 MET OXT HXT sing N N 289 PHD N CA sing N N 290 PHD N H2 sing N N 291 PHD N H sing N N 292 PHD CA C sing N N 293 PHD CA CB sing N N 294 PHD CA HA sing N N 295 PHD C O doub N N 296 PHD C OXT sing N N 297 PHD CB CG sing N N 298 PHD CB HB2 sing N N 299 PHD CB HB3 sing N N 300 PHD CG OD1 sing N N 301 PHD CG OD2 doub N N 302 PHD OD1 P sing N N 303 PHD P OP1 doub N N 304 PHD P OP2 sing N N 305 PHD P OP3 sing N N 306 PHD OP2 H2O sing N N 307 PHD OP3 H3O sing N N 308 PHD OXT HXT sing N N 309 PHE N CA sing N N 310 PHE N H sing N N 311 PHE N H2 sing N N 312 PHE CA C sing N N 313 PHE CA CB sing N N 314 PHE CA HA sing N N 315 PHE C O doub N N 316 PHE C OXT sing N N 317 PHE CB CG sing N N 318 PHE CB HB2 sing N N 319 PHE CB HB3 sing N N 320 PHE CG CD1 doub Y N 321 PHE CG CD2 sing Y N 322 PHE CD1 CE1 sing Y N 323 PHE CD1 HD1 sing N N 324 PHE CD2 CE2 doub Y N 325 PHE CD2 HD2 sing N N 326 PHE CE1 CZ doub Y N 327 PHE CE1 HE1 sing N N 328 PHE CE2 CZ sing Y N 329 PHE CE2 HE2 sing N N 330 PHE CZ HZ sing N N 331 PHE OXT HXT sing N N 332 PRO N CA sing N N 333 PRO N CD sing N N 334 PRO N H sing N N 335 PRO CA C sing N N 336 PRO CA CB sing N N 337 PRO CA HA sing N N 338 PRO C O doub N N 339 PRO C OXT sing N N 340 PRO CB CG sing N N 341 PRO CB HB2 sing N N 342 PRO CB HB3 sing N N 343 PRO CG CD sing N N 344 PRO CG HG2 sing N N 345 PRO CG HG3 sing N N 346 PRO CD HD2 sing N N 347 PRO CD HD3 sing N N 348 PRO OXT HXT sing N N 349 SER N CA sing N N 350 SER N H sing N N 351 SER N H2 sing N N 352 SER CA C sing N N 353 SER CA CB sing N N 354 SER CA HA sing N N 355 SER C O doub N N 356 SER C OXT sing N N 357 SER CB OG sing N N 358 SER CB HB2 sing N N 359 SER CB HB3 sing N N 360 SER OG HG sing N N 361 SER OXT HXT sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TRP N CA sing N N 379 TRP N H sing N N 380 TRP N H2 sing N N 381 TRP CA C sing N N 382 TRP CA CB sing N N 383 TRP CA HA sing N N 384 TRP C O doub N N 385 TRP C OXT sing N N 386 TRP CB CG sing N N 387 TRP CB HB2 sing N N 388 TRP CB HB3 sing N N 389 TRP CG CD1 doub Y N 390 TRP CG CD2 sing Y N 391 TRP CD1 NE1 sing Y N 392 TRP CD1 HD1 sing N N 393 TRP CD2 CE2 doub Y N 394 TRP CD2 CE3 sing Y N 395 TRP NE1 CE2 sing Y N 396 TRP NE1 HE1 sing N N 397 TRP CE2 CZ2 sing Y N 398 TRP CE3 CZ3 doub Y N 399 TRP CE3 HE3 sing N N 400 TRP CZ2 CH2 doub Y N 401 TRP CZ2 HZ2 sing N N 402 TRP CZ3 CH2 sing Y N 403 TRP CZ3 HZ3 sing N N 404 TRP CH2 HH2 sing N N 405 TRP OXT HXT sing N N 406 TYR N CA sing N N 407 TYR N H sing N N 408 TYR N H2 sing N N 409 TYR CA C sing N N 410 TYR CA CB sing N N 411 TYR CA HA sing N N 412 TYR C O doub N N 413 TYR C OXT sing N N 414 TYR CB CG sing N N 415 TYR CB HB2 sing N N 416 TYR CB HB3 sing N N 417 TYR CG CD1 doub Y N 418 TYR CG CD2 sing Y N 419 TYR CD1 CE1 sing Y N 420 TYR CD1 HD1 sing N N 421 TYR CD2 CE2 doub Y N 422 TYR CD2 HD2 sing N N 423 TYR CE1 CZ doub Y N 424 TYR CE1 HE1 sing N N 425 TYR CE2 CZ sing Y N 426 TYR CE2 HE2 sing N N 427 TYR CZ OH sing N N 428 TYR OH HH sing N N 429 TYR OXT HXT sing N N 430 VAL N CA sing N N 431 VAL N H sing N N 432 VAL N H2 sing N N 433 VAL CA C sing N N 434 VAL CA CB sing N N 435 VAL CA HA sing N N 436 VAL C O doub N N 437 VAL C OXT sing N N 438 VAL CB CG1 sing N N 439 VAL CB CG2 sing N N 440 VAL CB HB sing N N 441 VAL CG1 HG11 sing N N 442 VAL CG1 HG12 sing N N 443 VAL CG1 HG13 sing N N 444 VAL CG2 HG21 sing N N 445 VAL CG2 HG22 sing N N 446 VAL CG2 HG23 sing N N 447 VAL OXT HXT sing N N 448 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'MAGNESIUM ION' MG 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1TQP _pdbx_initial_refinement_model.details ? #