HEADER HYDROLASE 06-SEP-12 4GZB TITLE CRYSTAL STRUCTURE OF NATIVE AMPC BETA-LACTAMASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PAO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: AMPC, BLAAMPC, PA4110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-AMPC KEYWDS BETA-LACTAMASE FOLD, HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.BENVENUTI,F.DE LUCA,J.D.DOCQUIER,S.MANGANI REVDAT 3 08-NOV-23 4GZB 1 REMARK REVDAT 2 19-MAR-14 4GZB 1 JRNL REVDAT 1 10-APR-13 4GZB 0 JRNL AUTH S.D.LAHIRI,S.MANGANI,T.DURAND-REVILLE,M.BENVENUTI,F.DE LUCA, JRNL AUTH 2 G.SANYAL,J.D.DOCQUIER JRNL TITL STRUCTURAL INSIGHT INTO POTENT BROAD-SPECTRUM INHIBITION JRNL TITL 2 WITH REVERSIBLE RECYCLIZATION MECHANISM: AVIBACTAM IN JRNL TITL 3 COMPLEX WITH CTX-M-15 AND PSEUDOMONAS AERUGINOSA AMPC JRNL TITL 4 BETA-LACTAMASES JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 57 2496 2013 JRNL REFN ISSN 0066-4804 JRNL PMID 23439634 JRNL DOI 10.1128/AAC.02247-12 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 36340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2913 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3961 ; 2.029 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;33.110 ;23.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;15.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2279 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 1.207 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2912 ; 1.951 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 3.483 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1049 ; 5.358 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2493 12.2298 -14.3113 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0122 REMARK 3 T33: 0.0524 T12: 0.0065 REMARK 3 T13: -0.0080 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3753 L22: 1.2050 REMARK 3 L33: 1.0969 L12: -0.0652 REMARK 3 L13: 0.0916 L23: 0.5195 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: -0.0398 S13: -0.0052 REMARK 3 S21: 0.0039 S22: 0.0762 S23: -0.0770 REMARK 3 S31: -0.0540 S32: 0.0738 S33: -0.0386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9360 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 46.617 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% PEG 8000, O.1M K2HPO4, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.80667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.80667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.61333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 370 REMARK 465 ARG A 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 571 O HOH A 654 6444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 223 CE2 TYR A 223 CD2 0.098 REMARK 500 TYR A 355 CE2 TYR A 355 CD2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 28.85 46.12 REMARK 500 GLN A 178 -53.55 -121.56 REMARK 500 TYR A 223 23.67 -155.79 REMARK 500 ASP A 246 127.25 -38.25 REMARK 500 HIS A 257 42.00 -107.92 REMARK 500 ASN A 342 40.65 -99.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HBT RELATED DB: PDB REMARK 900 RELATED ID: 4HBU RELATED DB: PDB REMARK 900 RELATED ID: 4HEF RELATED DB: PDB DBREF 4GZB A 1 371 UNP P24735 AMPC_PSEAE 27 397 SEQRES 1 A 371 GLY GLU ALA PRO ALA ASP ARG LEU LYS ALA LEU VAL ASP SEQRES 2 A 371 ALA ALA VAL GLN PRO VAL MET LYS ALA ASN ASP ILE PRO SEQRES 3 A 371 GLY LEU ALA VAL ALA ILE SER LEU LYS GLY GLU PRO HIS SEQRES 4 A 371 TYR PHE SER TYR GLY LEU ALA SER LYS GLU ASP GLY ARG SEQRES 5 A 371 ARG VAL THR PRO GLU THR LEU PHE GLU ILE GLY SER VAL SEQRES 6 A 371 SER LYS THR PHE THR ALA THR LEU ALA GLY TYR ALA LEU SEQRES 7 A 371 THR GLN ASP LYS MET ARG LEU ASP ASP ARG ALA SER GLN SEQRES 8 A 371 HIS TRP PRO ALA LEU GLN GLY SER ARG PHE ASP GLY ILE SEQRES 9 A 371 SER LEU LEU ASP LEU ALA THR TYR THR ALA GLY GLY LEU SEQRES 10 A 371 PRO LEU GLN PHE PRO ASP SER VAL GLN LYS ASP GLN ALA SEQRES 11 A 371 GLN ILE ARG ASP TYR TYR ARG GLN TRP GLN PRO THR TYR SEQRES 12 A 371 ALA PRO GLY SER GLN ARG LEU TYR SER ASN PRO SER ILE SEQRES 13 A 371 GLY LEU PHE GLY TYR LEU ALA ALA ARG SER LEU GLY GLN SEQRES 14 A 371 PRO PHE GLU ARG LEU MET GLU GLN GLN VAL PHE PRO ALA SEQRES 15 A 371 LEU GLY LEU GLU GLN THR HIS LEU ASP VAL PRO GLU ALA SEQRES 16 A 371 ALA LEU ALA GLN TYR ALA GLN GLY TYR GLY LYS ASP ASP SEQRES 17 A 371 ARG PRO LEU ARG VAL GLY PRO GLY PRO LEU ASP ALA GLU SEQRES 18 A 371 GLY TYR GLY VAL LYS THR SER ALA ALA ASP LEU LEU ARG SEQRES 19 A 371 PHE VAL ASP ALA ASN LEU HIS PRO GLU ARG LEU ASP ARG SEQRES 20 A 371 PRO TRP ALA GLN ALA LEU ASP ALA THR HIS ARG GLY TYR SEQRES 21 A 371 TYR LYS VAL GLY ASP MET THR GLN GLY LEU GLY TRP GLU SEQRES 22 A 371 ALA TYR ASP TRP PRO ILE SER LEU LYS ARG LEU GLN ALA SEQRES 23 A 371 GLY ASN SER THR PRO MET ALA LEU GLN PRO HIS ARG ILE SEQRES 24 A 371 ALA ARG LEU PRO ALA PRO GLN ALA LEU GLU GLY GLN ARG SEQRES 25 A 371 LEU LEU ASN LYS THR GLY SER THR ASN GLY PHE GLY ALA SEQRES 26 A 371 TYR VAL ALA PHE VAL PRO GLY ARG ASP LEU GLY LEU VAL SEQRES 27 A 371 ILE LEU ALA ASN ARG ASN TYR PRO ASN ALA GLU ARG VAL SEQRES 28 A 371 LYS ILE ALA TYR ALA ILE LEU SER GLY LEU GLU GLN GLN SEQRES 29 A 371 GLY LYS VAL PRO LEU LYS ARG HET EDO A 400 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *231(H2 O) HELIX 1 1 PRO A 4 ASP A 6 5 3 HELIX 2 2 ARG A 7 ASP A 24 1 18 HELIX 3 3 VAL A 65 GLN A 80 1 16 HELIX 4 4 ARG A 88 GLN A 97 5 10 HELIX 5 5 SER A 99 GLY A 103 5 5 HELIX 6 6 SER A 105 THR A 111 1 7 HELIX 7 7 ASP A 128 TRP A 139 1 12 HELIX 8 8 SER A 152 LEU A 167 1 16 HELIX 9 9 PRO A 170 GLN A 178 1 9 HELIX 10 10 GLN A 178 LEU A 183 1 6 HELIX 11 11 PRO A 193 TYR A 200 5 8 HELIX 12 12 LYS A 206 ASP A 208 5 3 HELIX 13 13 LEU A 218 GLY A 224 1 7 HELIX 14 14 ALA A 229 HIS A 241 1 13 HELIX 15 15 PRO A 242 LEU A 245 5 4 HELIX 16 16 ASP A 246 ALA A 255 1 10 HELIX 17 17 SER A 280 ASN A 288 1 9 HELIX 18 18 SER A 289 GLN A 295 1 7 HELIX 19 19 PRO A 331 ARG A 333 5 3 HELIX 20 20 PRO A 346 GLN A 364 1 19 SHEET 1 A10 ARG A 52 ARG A 53 0 SHEET 2 A10 GLU A 37 SER A 47 -1 N ALA A 46 O ARG A 52 SHEET 3 A10 GLY A 27 LEU A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 A10 LEU A 335 ALA A 341 -1 O LEU A 340 N ALA A 29 SHEET 5 A10 GLY A 324 VAL A 330 -1 N VAL A 330 O LEU A 335 SHEET 6 A10 ARG A 312 SER A 319 -1 N GLY A 318 O ALA A 325 SHEET 7 A10 GLU A 273 ASP A 276 -1 N TYR A 275 O LEU A 313 SHEET 8 A10 MET A 266 GLN A 268 -1 N THR A 267 O ALA A 274 SHEET 9 A10 ARG A 258 VAL A 263 -1 N TYR A 260 O GLN A 268 SHEET 10 A10 ALA A 300 ALA A 307 -1 O GLN A 306 N GLY A 259 SHEET 1 B 3 LEU A 59 GLU A 61 0 SHEET 2 B 3 LYS A 226 SER A 228 -1 O THR A 227 N PHE A 60 SHEET 3 B 3 THR A 188 HIS A 189 -1 N HIS A 189 O LYS A 226 SHEET 1 C 2 GLN A 148 ARG A 149 0 SHEET 2 C 2 HIS A 297 ARG A 298 -1 O HIS A 297 N ARG A 149 SHEET 1 D 2 GLY A 203 TYR A 204 0 SHEET 2 D 2 PRO A 210 LEU A 211 -1 O LEU A 211 N GLY A 203 CISPEP 1 TRP A 277 PRO A 278 0 7.12 SITE 1 AC1 6 SER A 64 TYR A 151 THR A 317 GLY A 318 SITE 2 AC1 6 SER A 319 HOH A 707 CRYST1 83.060 83.060 122.420 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012039 0.006951 0.000000 0.00000 SCALE2 0.000000 0.013902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008169 0.00000