data_4GZN # _entry.id 4GZN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GZN pdb_00004gzn 10.2210/pdb4gzn/pdb NDB NA2036 ? ? RCSB RCSB074833 ? ? WWPDB D_1000074833 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-11-21 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.value' 24 3 'Structure model' '_struct_conn.pdbx_dist_value' 25 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 3 'Structure model' '_struct_ref_seq_dif.details' 40 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GZN _pdbx_database_status.recvd_initial_deposition_date 2012-09-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Zhang, X.' 2 'Cheng, X.' 3 # _citation.id primary _citation.title 'An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 26 _citation.page_first 2374 _citation.page_last 2379 _citation.year 2012 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23059534 _citation.pdbx_database_id_DOI 10.1101/gad.202200.112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Toh, H.' 2 ? primary 'Sasaki, H.' 3 ? primary 'Zhang, X.' 4 ? primary 'Cheng, X.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*TP*TP*GP*CP*(5CM)P*GP*CP*AP*G)-3') ; 3363.224 1 ? ? 'zinc finger domain, UNP residues 137-195' ? 2 polymer syn ;DNA (5'-D(*AP*CP*TP*GP*(5CM)P*GP*GP*CP*AP*AP*T)-3') ; 3372.238 1 ? ? ? ? 3 polymer man 'Zinc finger protein 57' 7053.033 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 7 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 8 water nat water 18.015 257 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name Zfp-57 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DA)(DT)(DT)(DG)(DC)(5CM)(DG)(DC)(DA)(DG)' TATTGCCGCAG A ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DT)(DG)(5CM)(DG)(DG)(DC)(DA)(DA)(DT)' ACTGCGGCAAT B ? 3 'polypeptide(L)' no no SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 6 'ZINC ION' ZN 7 'ACETATE ION' ACT 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 5CM n 1 8 DG n 1 9 DC n 1 10 DA n 1 11 DG n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 5CM n 2 6 DG n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DT n 3 1 SER n 3 2 GLU n 3 3 ARG n 3 4 PRO n 3 5 PHE n 3 6 PHE n 3 7 CYS n 3 8 ASN n 3 9 PHE n 3 10 CYS n 3 11 GLY n 3 12 LYS n 3 13 THR n 3 14 TYR n 3 15 ARG n 3 16 ASP n 3 17 ALA n 3 18 SER n 3 19 GLY n 3 20 LEU n 3 21 SER n 3 22 ARG n 3 23 HIS n 3 24 ARG n 3 25 ARG n 3 26 ALA n 3 27 HIS n 3 28 LEU n 3 29 GLY n 3 30 TYR n 3 31 ARG n 3 32 PRO n 3 33 ARG n 3 34 SER n 3 35 CYS n 3 36 PRO n 3 37 GLU n 3 38 CYS n 3 39 GLY n 3 40 LYS n 3 41 CYS n 3 42 PHE n 3 43 ARG n 3 44 ASP n 3 45 GLN n 3 46 SER n 3 47 GLU n 3 48 VAL n 3 49 ASN n 3 50 ARG n 3 51 HIS n 3 52 LEU n 3 53 LYS n 3 54 VAL n 3 55 HIS n 3 56 GLN n 3 57 ASN n 3 58 LYS n 3 59 PRO n 3 60 ALA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Zfp57 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'The DNA sequence occurs naturally in mouse.' 2 1 sample ? ? ? ? ? 'The DNA sequence occurs naturally in mouse.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 5CM 7 7 7 5CM 5CM A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DG 11 11 11 DG DG A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 5CM 5 5 5 5CM 5CM B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DT 11 11 11 DT DT B . n C 3 1 SER 1 136 136 SER SER C . n C 3 2 GLU 2 137 137 GLU GLU C . n C 3 3 ARG 3 138 138 ARG ARG C . n C 3 4 PRO 4 139 139 PRO PRO C . n C 3 5 PHE 5 140 140 PHE PHE C . n C 3 6 PHE 6 141 141 PHE PHE C . n C 3 7 CYS 7 142 142 CYS CYS C . n C 3 8 ASN 8 143 143 ASN ASN C . n C 3 9 PHE 9 144 144 PHE PHE C . n C 3 10 CYS 10 145 145 CYS CYS C . n C 3 11 GLY 11 146 146 GLY GLY C . n C 3 12 LYS 12 147 147 LYS LYS C . n C 3 13 THR 13 148 148 THR THR C . n C 3 14 TYR 14 149 149 TYR TYR C . n C 3 15 ARG 15 150 150 ARG ARG C . n C 3 16 ASP 16 151 151 ASP ASP C . n C 3 17 ALA 17 152 152 ALA ALA C . n C 3 18 SER 18 153 153 SER SER C . n C 3 19 GLY 19 154 154 GLY GLY C . n C 3 20 LEU 20 155 155 LEU LEU C . n C 3 21 SER 21 156 156 SER SER C . n C 3 22 ARG 22 157 157 ARG ARG C . n C 3 23 HIS 23 158 158 HIS HIS C . n C 3 24 ARG 24 159 159 ARG ARG C . n C 3 25 ARG 25 160 160 ARG ARG C . n C 3 26 ALA 26 161 161 ALA ALA C . n C 3 27 HIS 27 162 162 HIS HIS C . n C 3 28 LEU 28 163 163 LEU LEU C . n C 3 29 GLY 29 164 164 GLY GLY C . n C 3 30 TYR 30 165 165 TYR TYR C . n C 3 31 ARG 31 166 166 ARG ARG C . n C 3 32 PRO 32 167 167 PRO PRO C . n C 3 33 ARG 33 168 168 ARG ARG C . n C 3 34 SER 34 169 169 SER SER C . n C 3 35 CYS 35 170 170 CYS CYS C . n C 3 36 PRO 36 171 171 PRO PRO C . n C 3 37 GLU 37 172 172 GLU GLU C . n C 3 38 CYS 38 173 173 CYS CYS C . n C 3 39 GLY 39 174 174 GLY GLY C . n C 3 40 LYS 40 175 175 LYS LYS C . n C 3 41 CYS 41 176 176 CYS CYS C . n C 3 42 PHE 42 177 177 PHE PHE C . n C 3 43 ARG 43 178 178 ARG ARG C . n C 3 44 ASP 44 179 179 ASP ASP C . n C 3 45 GLN 45 180 180 GLN GLN C . n C 3 46 SER 46 181 181 SER SER C . n C 3 47 GLU 47 182 182 GLU GLU C . n C 3 48 VAL 48 183 183 VAL VAL C . n C 3 49 ASN 49 184 184 ASN ASN C . n C 3 50 ARG 50 185 185 ARG ARG C . n C 3 51 HIS 51 186 186 HIS HIS C . n C 3 52 LEU 52 187 187 LEU LEU C . n C 3 53 LYS 53 188 188 LYS LYS C . n C 3 54 VAL 54 189 189 VAL VAL C . n C 3 55 HIS 55 190 190 HIS HIS C . n C 3 56 GLN 56 191 191 GLN GLN C . n C 3 57 ASN 57 192 192 ASN ASN C . n C 3 58 LYS 58 193 193 LYS LYS C . n C 3 59 PRO 59 194 194 PRO PRO C . n C 3 60 ALA 60 195 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 101 1 CA CA B . E 5 MPD 1 201 1 MPD MRD C . F 5 MPD 1 202 2 MPD MPD C . G 6 ZN 1 203 1 ZN ZN C . H 6 ZN 1 204 2 ZN ZN C . I 7 ACT 1 205 1 ACT ACT C . J 8 HOH 1 101 4 HOH HOH A . J 8 HOH 2 102 10 HOH HOH A . J 8 HOH 3 103 15 HOH HOH A . J 8 HOH 4 104 31 HOH HOH A . J 8 HOH 5 105 34 HOH HOH A . J 8 HOH 6 106 38 HOH HOH A . J 8 HOH 7 107 39 HOH HOH A . J 8 HOH 8 108 42 HOH HOH A . J 8 HOH 9 109 43 HOH HOH A . J 8 HOH 10 110 51 HOH HOH A . J 8 HOH 11 111 54 HOH HOH A . J 8 HOH 12 112 62 HOH HOH A . J 8 HOH 13 113 64 HOH HOH A . J 8 HOH 14 114 68 HOH HOH A . J 8 HOH 15 115 69 HOH HOH A . J 8 HOH 16 116 72 HOH HOH A . J 8 HOH 17 117 76 HOH HOH A . J 8 HOH 18 118 77 HOH HOH A . J 8 HOH 19 119 78 HOH HOH A . J 8 HOH 20 120 82 HOH HOH A . J 8 HOH 21 121 91 HOH HOH A . J 8 HOH 22 122 92 HOH HOH A . J 8 HOH 23 123 96 HOH HOH A . J 8 HOH 24 124 99 HOH HOH A . J 8 HOH 25 125 102 HOH HOH A . J 8 HOH 26 126 109 HOH HOH A . J 8 HOH 27 127 111 HOH HOH A . J 8 HOH 28 128 112 HOH HOH A . J 8 HOH 29 129 113 HOH HOH A . J 8 HOH 30 130 114 HOH HOH A . J 8 HOH 31 131 119 HOH HOH A . J 8 HOH 32 132 120 HOH HOH A . J 8 HOH 33 133 122 HOH HOH A . J 8 HOH 34 134 123 HOH HOH A . J 8 HOH 35 135 124 HOH HOH A . J 8 HOH 36 136 128 HOH HOH A . J 8 HOH 37 137 130 HOH HOH A . J 8 HOH 38 138 133 HOH HOH A . J 8 HOH 39 139 145 HOH HOH A . J 8 HOH 40 140 146 HOH HOH A . J 8 HOH 41 141 147 HOH HOH A . J 8 HOH 42 142 149 HOH HOH A . J 8 HOH 43 143 153 HOH HOH A . J 8 HOH 44 144 159 HOH HOH A . J 8 HOH 45 145 161 HOH HOH A . J 8 HOH 46 146 162 HOH HOH A . J 8 HOH 47 147 164 HOH HOH A . J 8 HOH 48 148 170 HOH HOH A . J 8 HOH 49 149 189 HOH HOH A . J 8 HOH 50 150 194 HOH HOH A . J 8 HOH 51 151 196 HOH HOH A . J 8 HOH 52 152 197 HOH HOH A . J 8 HOH 53 153 205 HOH HOH A . J 8 HOH 54 154 206 HOH HOH A . J 8 HOH 55 155 211 HOH HOH A . J 8 HOH 56 156 212 HOH HOH A . J 8 HOH 57 157 221 HOH HOH A . J 8 HOH 58 158 226 HOH HOH A . J 8 HOH 59 159 227 HOH HOH A . J 8 HOH 60 160 229 HOH HOH A . J 8 HOH 61 161 230 HOH HOH A . J 8 HOH 62 162 231 HOH HOH A . J 8 HOH 63 163 233 HOH HOH A . J 8 HOH 64 164 238 HOH HOH A . J 8 HOH 65 165 243 HOH HOH A . J 8 HOH 66 166 244 HOH HOH A . J 8 HOH 67 167 245 HOH HOH A . J 8 HOH 68 168 246 HOH HOH A . J 8 HOH 69 169 247 HOH HOH A . J 8 HOH 70 170 249 HOH HOH A . J 8 HOH 71 171 251 HOH HOH A . J 8 HOH 72 172 252 HOH HOH A . J 8 HOH 73 173 255 HOH HOH A . J 8 HOH 74 174 19 HOH HOH A . K 8 HOH 1 201 2 HOH HOH B . K 8 HOH 2 202 5 HOH HOH B . K 8 HOH 3 203 9 HOH HOH B . K 8 HOH 4 204 12 HOH HOH B . K 8 HOH 5 205 14 HOH HOH B . K 8 HOH 6 206 16 HOH HOH B . K 8 HOH 7 207 20 HOH HOH B . K 8 HOH 8 208 21 HOH HOH B . K 8 HOH 9 209 23 HOH HOH B . K 8 HOH 10 210 24 HOH HOH B . K 8 HOH 11 211 25 HOH HOH B . K 8 HOH 12 212 32 HOH HOH B . K 8 HOH 13 213 33 HOH HOH B . K 8 HOH 14 214 36 HOH HOH B . K 8 HOH 15 215 40 HOH HOH B . K 8 HOH 16 216 41 HOH HOH B . K 8 HOH 17 217 46 HOH HOH B . K 8 HOH 18 218 47 HOH HOH B . K 8 HOH 19 219 49 HOH HOH B . K 8 HOH 20 220 52 HOH HOH B . K 8 HOH 21 221 53 HOH HOH B . K 8 HOH 22 222 56 HOH HOH B . K 8 HOH 23 223 59 HOH HOH B . K 8 HOH 24 224 60 HOH HOH B . K 8 HOH 25 225 61 HOH HOH B . K 8 HOH 26 226 67 HOH HOH B . K 8 HOH 27 227 70 HOH HOH B . K 8 HOH 28 228 73 HOH HOH B . K 8 HOH 29 229 74 HOH HOH B . K 8 HOH 30 230 80 HOH HOH B . K 8 HOH 31 231 81 HOH HOH B . K 8 HOH 32 232 83 HOH HOH B . K 8 HOH 33 233 85 HOH HOH B . K 8 HOH 34 234 88 HOH HOH B . K 8 HOH 35 235 89 HOH HOH B . K 8 HOH 36 236 90 HOH HOH B . K 8 HOH 37 237 93 HOH HOH B . K 8 HOH 38 238 94 HOH HOH B . K 8 HOH 39 239 97 HOH HOH B . K 8 HOH 40 240 100 HOH HOH B . K 8 HOH 41 241 101 HOH HOH B . K 8 HOH 42 242 104 HOH HOH B . K 8 HOH 43 243 108 HOH HOH B . K 8 HOH 44 244 115 HOH HOH B . K 8 HOH 45 245 118 HOH HOH B . K 8 HOH 46 246 125 HOH HOH B . K 8 HOH 47 247 126 HOH HOH B . K 8 HOH 48 248 127 HOH HOH B . K 8 HOH 49 249 131 HOH HOH B . K 8 HOH 50 250 132 HOH HOH B . K 8 HOH 51 251 138 HOH HOH B . K 8 HOH 52 252 141 HOH HOH B . K 8 HOH 53 253 142 HOH HOH B . K 8 HOH 54 254 154 HOH HOH B . K 8 HOH 55 255 160 HOH HOH B . K 8 HOH 56 256 163 HOH HOH B . K 8 HOH 57 257 167 HOH HOH B . K 8 HOH 58 258 168 HOH HOH B . K 8 HOH 59 259 169 HOH HOH B . K 8 HOH 60 260 171 HOH HOH B . K 8 HOH 61 261 172 HOH HOH B . K 8 HOH 62 262 176 HOH HOH B . K 8 HOH 63 263 180 HOH HOH B . K 8 HOH 64 264 182 HOH HOH B . K 8 HOH 65 265 185 HOH HOH B . K 8 HOH 66 266 188 HOH HOH B . K 8 HOH 67 267 192 HOH HOH B . K 8 HOH 68 268 200 HOH HOH B . K 8 HOH 69 269 202 HOH HOH B . K 8 HOH 70 270 208 HOH HOH B . K 8 HOH 71 271 209 HOH HOH B . K 8 HOH 72 272 216 HOH HOH B . K 8 HOH 73 273 218 HOH HOH B . K 8 HOH 74 274 223 HOH HOH B . K 8 HOH 75 275 224 HOH HOH B . K 8 HOH 76 276 232 HOH HOH B . K 8 HOH 77 277 234 HOH HOH B . K 8 HOH 78 278 240 HOH HOH B . K 8 HOH 79 279 241 HOH HOH B . K 8 HOH 80 280 242 HOH HOH B . K 8 HOH 81 281 256 HOH HOH B . L 8 HOH 1 301 1 HOH HOH C . L 8 HOH 2 302 3 HOH HOH C . L 8 HOH 3 303 6 HOH HOH C . L 8 HOH 4 304 7 HOH HOH C . L 8 HOH 5 305 8 HOH HOH C . L 8 HOH 6 306 11 HOH HOH C . L 8 HOH 7 307 13 HOH HOH C . L 8 HOH 8 308 17 HOH HOH C . L 8 HOH 9 309 18 HOH HOH C . L 8 HOH 10 310 22 HOH HOH C . L 8 HOH 11 311 26 HOH HOH C . L 8 HOH 12 312 27 HOH HOH C . L 8 HOH 13 313 28 HOH HOH C . L 8 HOH 14 314 29 HOH HOH C . L 8 HOH 15 315 30 HOH HOH C . L 8 HOH 16 316 35 HOH HOH C . L 8 HOH 17 317 37 HOH HOH C . L 8 HOH 18 318 44 HOH HOH C . L 8 HOH 19 319 45 HOH HOH C . L 8 HOH 20 320 48 HOH HOH C . L 8 HOH 21 321 50 HOH HOH C . L 8 HOH 22 322 55 HOH HOH C . L 8 HOH 23 323 57 HOH HOH C . L 8 HOH 24 324 58 HOH HOH C . L 8 HOH 25 325 63 HOH HOH C . L 8 HOH 26 326 65 HOH HOH C . L 8 HOH 27 327 66 HOH HOH C . L 8 HOH 28 328 71 HOH HOH C . L 8 HOH 29 329 75 HOH HOH C . L 8 HOH 30 330 79 HOH HOH C . L 8 HOH 31 331 84 HOH HOH C . L 8 HOH 32 332 86 HOH HOH C . L 8 HOH 33 333 87 HOH HOH C . L 8 HOH 34 334 95 HOH HOH C . L 8 HOH 35 335 98 HOH HOH C . L 8 HOH 36 336 103 HOH HOH C . L 8 HOH 37 337 105 HOH HOH C . L 8 HOH 38 338 106 HOH HOH C . L 8 HOH 39 339 107 HOH HOH C . L 8 HOH 40 340 110 HOH HOH C . L 8 HOH 41 341 116 HOH HOH C . L 8 HOH 42 342 117 HOH HOH C . L 8 HOH 43 343 121 HOH HOH C . L 8 HOH 44 344 129 HOH HOH C . L 8 HOH 45 345 134 HOH HOH C . L 8 HOH 46 346 135 HOH HOH C . L 8 HOH 47 347 136 HOH HOH C . L 8 HOH 48 348 137 HOH HOH C . L 8 HOH 49 349 139 HOH HOH C . L 8 HOH 50 350 140 HOH HOH C . L 8 HOH 51 351 143 HOH HOH C . L 8 HOH 52 352 144 HOH HOH C . L 8 HOH 53 353 148 HOH HOH C . L 8 HOH 54 354 150 HOH HOH C . L 8 HOH 55 355 151 HOH HOH C . L 8 HOH 56 356 152 HOH HOH C . L 8 HOH 57 357 155 HOH HOH C . L 8 HOH 58 358 156 HOH HOH C . L 8 HOH 59 359 157 HOH HOH C . L 8 HOH 60 360 158 HOH HOH C . L 8 HOH 61 361 165 HOH HOH C . L 8 HOH 62 362 166 HOH HOH C . L 8 HOH 63 363 173 HOH HOH C . L 8 HOH 64 364 174 HOH HOH C . L 8 HOH 65 365 175 HOH HOH C . L 8 HOH 66 366 177 HOH HOH C . L 8 HOH 67 367 178 HOH HOH C . L 8 HOH 68 368 179 HOH HOH C . L 8 HOH 69 369 181 HOH HOH C . L 8 HOH 70 370 183 HOH HOH C . L 8 HOH 71 371 184 HOH HOH C . L 8 HOH 72 372 186 HOH HOH C . L 8 HOH 73 373 187 HOH HOH C . L 8 HOH 74 374 190 HOH HOH C . L 8 HOH 75 375 191 HOH HOH C . L 8 HOH 76 376 193 HOH HOH C . L 8 HOH 77 377 195 HOH HOH C . L 8 HOH 78 378 198 HOH HOH C . L 8 HOH 79 379 199 HOH HOH C . L 8 HOH 80 380 201 HOH HOH C . L 8 HOH 81 381 203 HOH HOH C . L 8 HOH 82 382 204 HOH HOH C . L 8 HOH 83 383 207 HOH HOH C . L 8 HOH 84 384 210 HOH HOH C . L 8 HOH 85 385 213 HOH HOH C . L 8 HOH 86 386 214 HOH HOH C . L 8 HOH 87 387 215 HOH HOH C . L 8 HOH 88 388 217 HOH HOH C . L 8 HOH 89 389 219 HOH HOH C . L 8 HOH 90 390 220 HOH HOH C . L 8 HOH 91 391 222 HOH HOH C . L 8 HOH 92 392 225 HOH HOH C . L 8 HOH 93 393 228 HOH HOH C . L 8 HOH 94 394 235 HOH HOH C . L 8 HOH 95 395 236 HOH HOH C . L 8 HOH 96 396 237 HOH HOH C . L 8 HOH 97 397 239 HOH HOH C . L 8 HOH 98 398 248 HOH HOH C . L 8 HOH 99 399 250 HOH HOH C . L 8 HOH 100 400 253 HOH HOH C . L 8 HOH 101 401 254 HOH HOH C . L 8 HOH 102 402 257 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C SER 136 ? CB ? C SER 1 CB 2 1 Y 1 C SER 136 ? OG ? C SER 1 OG 3 1 Y 1 C GLU 137 ? CG ? C GLU 2 CG 4 1 Y 1 C GLU 137 ? CD ? C GLU 2 CD 5 1 Y 1 C GLU 137 ? OE1 ? C GLU 2 OE1 6 1 Y 1 C GLU 137 ? OE2 ? C GLU 2 OE2 7 1 Y 1 C LYS 193 ? CG ? C LYS 58 CG 8 1 Y 1 C LYS 193 ? CD ? C LYS 58 CD 9 1 Y 1 C LYS 193 ? CE ? C LYS 58 CE 10 1 Y 1 C LYS 193 ? NZ ? C LYS 58 NZ 11 1 Y 1 C PRO 194 ? O ? C PRO 59 O 12 1 Y 1 C PRO 194 ? CB ? C PRO 59 CB 13 1 Y 1 C PRO 194 ? CG ? C PRO 59 CG 14 1 Y 1 C PRO 194 ? CD ? C PRO 59 CD # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' '(phenix.autosol)' ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4GZN _cell.length_a 40.218 _cell.length_b 60.641 _cell.length_c 96.119 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GZN _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GZN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '25% MPD, 15% PEG8000, 100mM CaCl2 and 100 mM acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-01-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 4GZN _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 48.6 _reflns.d_resolution_high 0.99 _reflns.number_obs 802194 _reflns.number_all 802194 _reflns.percent_possible_obs 94.4 _reflns.pdbx_Rmerge_I_obs 0.133 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.1 _reflns.B_iso_Wilson_estimate 7.2 _reflns.pdbx_redundancy 12.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 0.99 1.03 58.9 0.404 ? 2.8 3.9 ? 3816 ? ? ? ? 1 1 1.03 1.07 85.3 0.329 ? ? 7.6 ? 5691 ? ? ? ? 2 1 # _refine.entry_id 4GZN _refine.ls_number_reflns_obs 117899 _refine.ls_number_reflns_all 126488 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.02 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.683 _refine.ls_d_res_high 0.990 _refine.ls_percent_reflns_obs 93.21 _refine.ls_R_factor_obs 0.1319 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1314 _refine.ls_R_factor_R_free 0.1396 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 5979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 7.84 _refine.aniso_B[1][1] 0.4432 _refine.aniso_B[2][2] -0.5950 _refine.aniso_B[3][3] 0.1519 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.471 _refine.solvent_model_param_bsol 65.152 _refine.pdbx_solvent_vdw_probe_radii 0.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.00 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.07 _refine.pdbx_overall_phase_error 10.96 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 473 _refine_hist.pdbx_number_atoms_nucleic_acid 447 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 257 _refine_hist.number_atoms_total 1200 _refine_hist.d_res_high 0.990 _refine_hist.d_res_low 19.683 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 1203 ? 'X-RAY DIFFRACTION' f_angle_d 1.799 ? ? 1776 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 25.061 ? ? 601 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.075 ? ? 200 ? 'X-RAY DIFFRACTION' f_plane_restr 0.010 ? ? 137 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 0.9902 1.0256 6246 0.3251 52.00 0.3175 . . 395 . . . . 'X-RAY DIFFRACTION' . 1.0256 1.0666 10204 0.1970 85.00 0.1963 . . 565 . . . . 'X-RAY DIFFRACTION' . 1.0666 1.1152 11707 0.1279 97.00 0.1403 . . 588 . . . . 'X-RAY DIFFRACTION' . 1.1152 1.1740 11909 0.1045 99.00 0.1207 . . 607 . . . . 'X-RAY DIFFRACTION' . 1.1740 1.2475 11877 0.1031 99.00 0.1151 . . 655 . . . . 'X-RAY DIFFRACTION' . 1.2475 1.3438 11958 0.1047 100.00 0.1127 . . 672 . . . . 'X-RAY DIFFRACTION' . 1.3438 1.4790 11948 0.1032 100.00 0.1155 . . 652 . . . . 'X-RAY DIFFRACTION' . 1.4790 1.6929 11983 0.1070 100.00 0.1228 . . 664 . . . . 'X-RAY DIFFRACTION' . 1.6929 2.1325 12091 0.1270 100.00 0.1382 . . 574 . . . . 'X-RAY DIFFRACTION' . 2.1325 19.6867 11997 0.1521 100.00 0.1527 . . 607 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4GZN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GZN _struct.title 'Mouse ZFP57 zinc fingers in complex with methylated DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GZN _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'Zinc Finger, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 7 ? J N N 8 ? K N N 8 ? L N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ZFP57_MOUSE Q8C6P8 3 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 137 ? 2 PDB 4GZN 4GZN 1 TATTGCXGCAG ? ? 3 PDB 4GZN 4GZN 2 ACTGXGGCAAT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GZN C 2 ? 60 ? Q8C6P8 137 ? 195 ? 137 195 2 2 4GZN A 1 ? 11 ? 4GZN 1 ? 11 ? 1 11 3 3 4GZN B 1 ? 11 ? 4GZN 1 ? 11 ? 1 11 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4GZN _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id C _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8C6P8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 136 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5250 ? 1 MORE -35 ? 1 'SSA (A^2)' 6700 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP C 16 ? GLY C 29 ? ASP C 151 GLY C 164 1 ? 14 HELX_P HELX_P2 2 ASP C 44 ? LEU C 52 ? ASP C 179 LEU C 187 1 ? 9 HELX_P HELX_P3 3 LYS C 53 ? GLN C 56 ? LYS C 188 GLN C 191 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 6 "O3'" A ? ? 1_555 A 5CM 7 P A ? A DC 6 A 5CM 7 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A DC 6 "O3'" B ? ? 1_555 A 5CM 7 P B ? A DC 6 A 5CM 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? A 5CM 7 "O3'" A ? ? 1_555 A DG 8 P A ? A 5CM 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? A 5CM 7 "O3'" B ? ? 1_555 A DG 8 P B ? A 5CM 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? B DG 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DG 4 B 5CM 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale6 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? metalc1 metalc ? ? J HOH . O ? ? ? 1_555 D CA . CA ? ? A HOH 101 B CA 101 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc2 metalc ? ? J HOH . O ? ? ? 1_555 D CA . CA ? ? A HOH 103 B CA 101 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc3 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 203 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc4 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 204 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc5 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 208 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 209 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc8 metalc ? ? C CYS 7 SG ? ? ? 1_555 H ZN . ZN ? ? C CYS 142 C ZN 204 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc9 metalc ? ? C CYS 10 SG ? ? ? 1_555 H ZN . ZN ? ? C CYS 145 C ZN 204 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc10 metalc ? ? C HIS 23 NE2 ? ? ? 1_555 H ZN . ZN ? ? C HIS 158 C ZN 204 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc11 metalc ? ? C HIS 27 NE2 ? ? ? 1_555 H ZN . ZN ? ? C HIS 162 C ZN 204 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc12 metalc ? ? C CYS 35 SG ? ? ? 1_555 G ZN . ZN ? ? C CYS 170 C ZN 203 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc13 metalc ? ? C CYS 38 SG ? ? ? 1_555 G ZN . ZN ? ? C CYS 173 C ZN 203 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc14 metalc ? ? C HIS 51 NE2 ? ? ? 1_555 G ZN . ZN ? ? C HIS 186 C ZN 203 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc15 metalc ? ? C HIS 55 NE2 ? ? ? 1_555 G ZN . ZN ? ? C HIS 190 C ZN 203 1_555 ? ? ? ? ? ? ? 2.044 ? ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5CM 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5CM 7 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5CM 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5CM 7 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5CM 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5CM 7 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B 5CM 5 N3 ? ? A DG 8 B 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B 5CM 5 O2 ? ? A DG 8 B 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B 5CM 5 N4 ? ? A DG 8 B 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 10 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 10 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 103 ? 1_555 76.5 ? 2 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 203 ? 1_555 70.0 ? 3 O ? J HOH . ? A HOH 103 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 203 ? 1_555 113.2 ? 4 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 204 ? 1_555 78.0 ? 5 O ? J HOH . ? A HOH 103 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 204 ? 1_555 87.3 ? 6 O ? K HOH . ? B HOH 203 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 204 ? 1_555 135.6 ? 7 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 206 ? 1_555 127.9 ? 8 O ? J HOH . ? A HOH 103 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 206 ? 1_555 87.8 ? 9 O ? K HOH . ? B HOH 203 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 206 ? 1_555 71.6 ? 10 O ? K HOH . ? B HOH 204 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 206 ? 1_555 151.4 ? 11 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 111.0 ? 12 O ? J HOH . ? A HOH 103 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 165.0 ? 13 O ? K HOH . ? B HOH 203 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 81.7 ? 14 O ? K HOH . ? B HOH 204 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 81.9 ? 15 O ? K HOH . ? B HOH 206 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 208 ? 1_555 96.7 ? 16 O ? J HOH . ? A HOH 101 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 147.6 ? 17 O ? J HOH . ? A HOH 103 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 80.8 ? 18 O ? K HOH . ? B HOH 203 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 141.3 ? 19 O ? K HOH . ? B HOH 204 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 78.1 ? 20 O ? K HOH . ? B HOH 206 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 73.3 ? 21 O ? K HOH . ? B HOH 208 ? 1_555 CA ? D CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 86.9 ? 22 SG ? C CYS 7 ? C CYS 142 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 SG ? C CYS 10 ? C CYS 145 ? 1_555 118.8 ? 23 SG ? C CYS 7 ? C CYS 142 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 NE2 ? C HIS 23 ? C HIS 158 ? 1_555 105.4 ? 24 SG ? C CYS 10 ? C CYS 145 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 NE2 ? C HIS 23 ? C HIS 158 ? 1_555 104.6 ? 25 SG ? C CYS 7 ? C CYS 142 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 NE2 ? C HIS 27 ? C HIS 162 ? 1_555 107.5 ? 26 SG ? C CYS 10 ? C CYS 145 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 NE2 ? C HIS 27 ? C HIS 162 ? 1_555 121.8 ? 27 NE2 ? C HIS 23 ? C HIS 158 ? 1_555 ZN ? H ZN . ? C ZN 204 ? 1_555 NE2 ? C HIS 27 ? C HIS 162 ? 1_555 94.4 ? 28 SG ? C CYS 35 ? C CYS 170 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 SG ? C CYS 38 ? C CYS 173 ? 1_555 114.5 ? 29 SG ? C CYS 35 ? C CYS 170 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 NE2 ? C HIS 51 ? C HIS 186 ? 1_555 105.9 ? 30 SG ? C CYS 38 ? C CYS 173 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 NE2 ? C HIS 51 ? C HIS 186 ? 1_555 106.7 ? 31 SG ? C CYS 35 ? C CYS 170 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 NE2 ? C HIS 55 ? C HIS 190 ? 1_555 108.9 ? 32 SG ? C CYS 38 ? C CYS 173 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 NE2 ? C HIS 55 ? C HIS 190 ? 1_555 112.5 ? 33 NE2 ? C HIS 51 ? C HIS 186 ? 1_555 ZN ? G ZN . ? C ZN 203 ? 1_555 NE2 ? C HIS 55 ? C HIS 190 ? 1_555 107.9 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE C 5 ? PHE C 6 ? PHE C 140 PHE C 141 A 2 THR C 13 ? TYR C 14 ? THR C 148 TYR C 149 B 1 ARG C 33 ? SER C 34 ? ARG C 168 SER C 169 B 2 CYS C 41 ? PHE C 42 ? CYS C 176 PHE C 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE C 5 ? N PHE C 140 O TYR C 14 ? O TYR C 149 B 1 2 N ARG C 33 ? N ARG C 168 O PHE C 42 ? O PHE C 177 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CA 101 ? 7 'BINDING SITE FOR RESIDUE CA B 101' AC2 Software C MPD 201 ? 7 'BINDING SITE FOR RESIDUE MPD C 201' AC3 Software C MPD 202 ? 8 'BINDING SITE FOR RESIDUE MPD C 202' AC4 Software C ZN 203 ? 4 'BINDING SITE FOR RESIDUE ZN C 203' AC5 Software C ZN 204 ? 4 'BINDING SITE FOR RESIDUE ZN C 204' AC6 Software C ACT 205 ? 7 'BINDING SITE FOR RESIDUE ACT C 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH J . ? HOH A 101 . ? 1_555 ? 2 AC1 7 HOH J . ? HOH A 103 . ? 1_555 ? 3 AC1 7 HOH K . ? HOH B 203 . ? 1_555 ? 4 AC1 7 HOH K . ? HOH B 204 . ? 1_555 ? 5 AC1 7 HOH K . ? HOH B 206 . ? 1_555 ? 6 AC1 7 HOH K . ? HOH B 208 . ? 1_555 ? 7 AC1 7 HOH K . ? HOH B 209 . ? 1_555 ? 8 AC2 7 HOH J . ? HOH A 168 . ? 1_555 ? 9 AC2 7 PHE C 6 ? PHE C 141 . ? 5_555 ? 10 AC2 7 ASN C 49 ? ASN C 184 . ? 1_555 ? 11 AC2 7 HOH L . ? HOH C 313 . ? 5_555 ? 12 AC2 7 HOH L . ? HOH C 328 . ? 1_555 ? 13 AC2 7 HOH L . ? HOH C 329 . ? 5_555 ? 14 AC2 7 HOH L . ? HOH C 377 . ? 5_555 ? 15 AC3 8 5CM B 5 ? 5CM B 5 . ? 3_455 ? 16 AC3 8 HOH K . ? HOH B 265 . ? 3_455 ? 17 AC3 8 HIS C 23 ? HIS C 158 . ? 3_455 ? 18 AC3 8 ALA C 26 ? ALA C 161 . ? 1_555 ? 19 AC3 8 ALA C 26 ? ALA C 161 . ? 3_455 ? 20 AC3 8 HIS C 27 ? HIS C 162 . ? 1_555 ? 21 AC3 8 GLY C 29 ? GLY C 164 . ? 1_555 ? 22 AC3 8 HOH L . ? HOH C 333 . ? 7_445 ? 23 AC4 4 CYS C 35 ? CYS C 170 . ? 1_555 ? 24 AC4 4 CYS C 38 ? CYS C 173 . ? 1_555 ? 25 AC4 4 HIS C 51 ? HIS C 186 . ? 1_555 ? 26 AC4 4 HIS C 55 ? HIS C 190 . ? 1_555 ? 27 AC5 4 CYS C 7 ? CYS C 142 . ? 1_555 ? 28 AC5 4 CYS C 10 ? CYS C 145 . ? 1_555 ? 29 AC5 4 HIS C 23 ? HIS C 158 . ? 1_555 ? 30 AC5 4 HIS C 27 ? HIS C 162 . ? 1_555 ? 31 AC6 7 HOH J . ? HOH A 111 . ? 7_455 ? 32 AC6 7 LEU C 28 ? LEU C 163 . ? 7_455 ? 33 AC6 7 TYR C 30 ? TYR C 165 . ? 7_455 ? 34 AC6 7 HIS C 55 ? HIS C 190 . ? 1_555 ? 35 AC6 7 HOH L . ? HOH C 337 . ? 1_555 ? 36 AC6 7 HOH L . ? HOH C 352 . ? 1_555 ? 37 AC6 7 HOH L . ? HOH C 392 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 3 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 3 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.372 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.047 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? A 101.23 109.40 -8.17 0.80 N 2 1 "O4'" A DG 5 ? B "C1'" A DG 5 ? B N9 A DG 5 ? ? 101.03 108.00 -6.97 0.70 N 3 1 "O4'" A DC 9 ? A "C1'" A DC 9 ? A N1 A DC 9 ? ? 102.96 108.00 -5.04 0.70 N 4 1 "O4'" A DA 10 ? A "C1'" A DA 10 ? A N9 A DA 10 ? ? 103.64 108.00 -4.36 0.70 N 5 1 "O4'" A DG 11 ? B "C1'" A DG 11 ? B N9 A DG 11 ? ? 112.63 108.30 4.33 0.30 N 6 1 "O4'" B DT 3 ? ? "C1'" B DT 3 ? ? N1 B DT 3 ? ? 110.41 108.30 2.11 0.30 N 7 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 103.26 108.00 -4.74 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 7 A 5CM 7 ? DC ? 2 B 5CM 5 B 5CM 5 ? DC ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id C _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 195 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 60 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 CA CA CA N N 118 CYS N N N N 119 CYS CA C N R 120 CYS C C N N 121 CYS O O N N 122 CYS CB C N N 123 CYS SG S N N 124 CYS OXT O N N 125 CYS H H N N 126 CYS H2 H N N 127 CYS HA H N N 128 CYS HB2 H N N 129 CYS HB3 H N N 130 CYS HG H N N 131 CYS HXT H N N 132 DA OP3 O N N 133 DA P P N N 134 DA OP1 O N N 135 DA OP2 O N N 136 DA "O5'" O N N 137 DA "C5'" C N N 138 DA "C4'" C N R 139 DA "O4'" O N N 140 DA "C3'" C N S 141 DA "O3'" O N N 142 DA "C2'" C N N 143 DA "C1'" C N R 144 DA N9 N Y N 145 DA C8 C Y N 146 DA N7 N Y N 147 DA C5 C Y N 148 DA C6 C Y N 149 DA N6 N N N 150 DA N1 N Y N 151 DA C2 C Y N 152 DA N3 N Y N 153 DA C4 C Y N 154 DA HOP3 H N N 155 DA HOP2 H N N 156 DA "H5'" H N N 157 DA "H5''" H N N 158 DA "H4'" H N N 159 DA "H3'" H N N 160 DA "HO3'" H N N 161 DA "H2'" H N N 162 DA "H2''" H N N 163 DA "H1'" H N N 164 DA H8 H N N 165 DA H61 H N N 166 DA H62 H N N 167 DA H2 H N N 168 DC OP3 O N N 169 DC P P N N 170 DC OP1 O N N 171 DC OP2 O N N 172 DC "O5'" O N N 173 DC "C5'" C N N 174 DC "C4'" C N R 175 DC "O4'" O N N 176 DC "C3'" C N S 177 DC "O3'" O N N 178 DC "C2'" C N N 179 DC "C1'" C N R 180 DC N1 N N N 181 DC C2 C N N 182 DC O2 O N N 183 DC N3 N N N 184 DC C4 C N N 185 DC N4 N N N 186 DC C5 C N N 187 DC C6 C N N 188 DC HOP3 H N N 189 DC HOP2 H N N 190 DC "H5'" H N N 191 DC "H5''" H N N 192 DC "H4'" H N N 193 DC "H3'" H N N 194 DC "HO3'" H N N 195 DC "H2'" H N N 196 DC "H2''" H N N 197 DC "H1'" H N N 198 DC H41 H N N 199 DC H42 H N N 200 DC H5 H N N 201 DC H6 H N N 202 DG OP3 O N N 203 DG P P N N 204 DG OP1 O N N 205 DG OP2 O N N 206 DG "O5'" O N N 207 DG "C5'" C N N 208 DG "C4'" C N R 209 DG "O4'" O N N 210 DG "C3'" C N S 211 DG "O3'" O N N 212 DG "C2'" C N N 213 DG "C1'" C N R 214 DG N9 N Y N 215 DG C8 C Y N 216 DG N7 N Y N 217 DG C5 C Y N 218 DG C6 C N N 219 DG O6 O N N 220 DG N1 N N N 221 DG C2 C N N 222 DG N2 N N N 223 DG N3 N N N 224 DG C4 C Y N 225 DG HOP3 H N N 226 DG HOP2 H N N 227 DG "H5'" H N N 228 DG "H5''" H N N 229 DG "H4'" H N N 230 DG "H3'" H N N 231 DG "HO3'" H N N 232 DG "H2'" H N N 233 DG "H2''" H N N 234 DG "H1'" H N N 235 DG H8 H N N 236 DG H1 H N N 237 DG H21 H N N 238 DG H22 H N N 239 DT OP3 O N N 240 DT P P N N 241 DT OP1 O N N 242 DT OP2 O N N 243 DT "O5'" O N N 244 DT "C5'" C N N 245 DT "C4'" C N R 246 DT "O4'" O N N 247 DT "C3'" C N S 248 DT "O3'" O N N 249 DT "C2'" C N N 250 DT "C1'" C N R 251 DT N1 N N N 252 DT C2 C N N 253 DT O2 O N N 254 DT N3 N N N 255 DT C4 C N N 256 DT O4 O N N 257 DT C5 C N N 258 DT C7 C N N 259 DT C6 C N N 260 DT HOP3 H N N 261 DT HOP2 H N N 262 DT "H5'" H N N 263 DT "H5''" H N N 264 DT "H4'" H N N 265 DT "H3'" H N N 266 DT "HO3'" H N N 267 DT "H2'" H N N 268 DT "H2''" H N N 269 DT "H1'" H N N 270 DT H3 H N N 271 DT H71 H N N 272 DT H72 H N N 273 DT H73 H N N 274 DT H6 H N N 275 GLN N N N N 276 GLN CA C N S 277 GLN C C N N 278 GLN O O N N 279 GLN CB C N N 280 GLN CG C N N 281 GLN CD C N N 282 GLN OE1 O N N 283 GLN NE2 N N N 284 GLN OXT O N N 285 GLN H H N N 286 GLN H2 H N N 287 GLN HA H N N 288 GLN HB2 H N N 289 GLN HB3 H N N 290 GLN HG2 H N N 291 GLN HG3 H N N 292 GLN HE21 H N N 293 GLN HE22 H N N 294 GLN HXT H N N 295 GLU N N N N 296 GLU CA C N S 297 GLU C C N N 298 GLU O O N N 299 GLU CB C N N 300 GLU CG C N N 301 GLU CD C N N 302 GLU OE1 O N N 303 GLU OE2 O N N 304 GLU OXT O N N 305 GLU H H N N 306 GLU H2 H N N 307 GLU HA H N N 308 GLU HB2 H N N 309 GLU HB3 H N N 310 GLU HG2 H N N 311 GLU HG3 H N N 312 GLU HE2 H N N 313 GLU HXT H N N 314 GLY N N N N 315 GLY CA C N N 316 GLY C C N N 317 GLY O O N N 318 GLY OXT O N N 319 GLY H H N N 320 GLY H2 H N N 321 GLY HA2 H N N 322 GLY HA3 H N N 323 GLY HXT H N N 324 HIS N N N N 325 HIS CA C N S 326 HIS C C N N 327 HIS O O N N 328 HIS CB C N N 329 HIS CG C Y N 330 HIS ND1 N Y N 331 HIS CD2 C Y N 332 HIS CE1 C Y N 333 HIS NE2 N Y N 334 HIS OXT O N N 335 HIS H H N N 336 HIS H2 H N N 337 HIS HA H N N 338 HIS HB2 H N N 339 HIS HB3 H N N 340 HIS HD1 H N N 341 HIS HD2 H N N 342 HIS HE1 H N N 343 HIS HE2 H N N 344 HIS HXT H N N 345 HOH O O N N 346 HOH H1 H N N 347 HOH H2 H N N 348 LEU N N N N 349 LEU CA C N S 350 LEU C C N N 351 LEU O O N N 352 LEU CB C N N 353 LEU CG C N N 354 LEU CD1 C N N 355 LEU CD2 C N N 356 LEU OXT O N N 357 LEU H H N N 358 LEU H2 H N N 359 LEU HA H N N 360 LEU HB2 H N N 361 LEU HB3 H N N 362 LEU HG H N N 363 LEU HD11 H N N 364 LEU HD12 H N N 365 LEU HD13 H N N 366 LEU HD21 H N N 367 LEU HD22 H N N 368 LEU HD23 H N N 369 LEU HXT H N N 370 LYS N N N N 371 LYS CA C N S 372 LYS C C N N 373 LYS O O N N 374 LYS CB C N N 375 LYS CG C N N 376 LYS CD C N N 377 LYS CE C N N 378 LYS NZ N N N 379 LYS OXT O N N 380 LYS H H N N 381 LYS H2 H N N 382 LYS HA H N N 383 LYS HB2 H N N 384 LYS HB3 H N N 385 LYS HG2 H N N 386 LYS HG3 H N N 387 LYS HD2 H N N 388 LYS HD3 H N N 389 LYS HE2 H N N 390 LYS HE3 H N N 391 LYS HZ1 H N N 392 LYS HZ2 H N N 393 LYS HZ3 H N N 394 LYS HXT H N N 395 MPD C1 C N N 396 MPD C2 C N N 397 MPD O2 O N N 398 MPD CM C N N 399 MPD C3 C N N 400 MPD C4 C N S 401 MPD O4 O N N 402 MPD C5 C N N 403 MPD H11 H N N 404 MPD H12 H N N 405 MPD H13 H N N 406 MPD HO2 H N N 407 MPD HM1 H N N 408 MPD HM2 H N N 409 MPD HM3 H N N 410 MPD H31 H N N 411 MPD H32 H N N 412 MPD H4 H N N 413 MPD HO4 H N N 414 MPD H51 H N N 415 MPD H52 H N N 416 MPD H53 H N N 417 PHE N N N N 418 PHE CA C N S 419 PHE C C N N 420 PHE O O N N 421 PHE CB C N N 422 PHE CG C Y N 423 PHE CD1 C Y N 424 PHE CD2 C Y N 425 PHE CE1 C Y N 426 PHE CE2 C Y N 427 PHE CZ C Y N 428 PHE OXT O N N 429 PHE H H N N 430 PHE H2 H N N 431 PHE HA H N N 432 PHE HB2 H N N 433 PHE HB3 H N N 434 PHE HD1 H N N 435 PHE HD2 H N N 436 PHE HE1 H N N 437 PHE HE2 H N N 438 PHE HZ H N N 439 PHE HXT H N N 440 PRO N N N N 441 PRO CA C N S 442 PRO C C N N 443 PRO O O N N 444 PRO CB C N N 445 PRO CG C N N 446 PRO CD C N N 447 PRO OXT O N N 448 PRO H H N N 449 PRO HA H N N 450 PRO HB2 H N N 451 PRO HB3 H N N 452 PRO HG2 H N N 453 PRO HG3 H N N 454 PRO HD2 H N N 455 PRO HD3 H N N 456 PRO HXT H N N 457 SER N N N N 458 SER CA C N S 459 SER C C N N 460 SER O O N N 461 SER CB C N N 462 SER OG O N N 463 SER OXT O N N 464 SER H H N N 465 SER H2 H N N 466 SER HA H N N 467 SER HB2 H N N 468 SER HB3 H N N 469 SER HG H N N 470 SER HXT H N N 471 THR N N N N 472 THR CA C N S 473 THR C C N N 474 THR O O N N 475 THR CB C N R 476 THR OG1 O N N 477 THR CG2 C N N 478 THR OXT O N N 479 THR H H N N 480 THR H2 H N N 481 THR HA H N N 482 THR HB H N N 483 THR HG1 H N N 484 THR HG21 H N N 485 THR HG22 H N N 486 THR HG23 H N N 487 THR HXT H N N 488 TYR N N N N 489 TYR CA C N S 490 TYR C C N N 491 TYR O O N N 492 TYR CB C N N 493 TYR CG C Y N 494 TYR CD1 C Y N 495 TYR CD2 C Y N 496 TYR CE1 C Y N 497 TYR CE2 C Y N 498 TYR CZ C Y N 499 TYR OH O N N 500 TYR OXT O N N 501 TYR H H N N 502 TYR H2 H N N 503 TYR HA H N N 504 TYR HB2 H N N 505 TYR HB3 H N N 506 TYR HD1 H N N 507 TYR HD2 H N N 508 TYR HE1 H N N 509 TYR HE2 H N N 510 TYR HH H N N 511 TYR HXT H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 ZN ZN ZN N N 532 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ACT C O doub N N 39 ACT C OXT sing N N 40 ACT C CH3 sing N N 41 ACT CH3 H1 sing N N 42 ACT CH3 H2 sing N N 43 ACT CH3 H3 sing N N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 DA OP3 P sing N N 127 DA OP3 HOP3 sing N N 128 DA P OP1 doub N N 129 DA P OP2 sing N N 130 DA P "O5'" sing N N 131 DA OP2 HOP2 sing N N 132 DA "O5'" "C5'" sing N N 133 DA "C5'" "C4'" sing N N 134 DA "C5'" "H5'" sing N N 135 DA "C5'" "H5''" sing N N 136 DA "C4'" "O4'" sing N N 137 DA "C4'" "C3'" sing N N 138 DA "C4'" "H4'" sing N N 139 DA "O4'" "C1'" sing N N 140 DA "C3'" "O3'" sing N N 141 DA "C3'" "C2'" sing N N 142 DA "C3'" "H3'" sing N N 143 DA "O3'" "HO3'" sing N N 144 DA "C2'" "C1'" sing N N 145 DA "C2'" "H2'" sing N N 146 DA "C2'" "H2''" sing N N 147 DA "C1'" N9 sing N N 148 DA "C1'" "H1'" sing N N 149 DA N9 C8 sing Y N 150 DA N9 C4 sing Y N 151 DA C8 N7 doub Y N 152 DA C8 H8 sing N N 153 DA N7 C5 sing Y N 154 DA C5 C6 sing Y N 155 DA C5 C4 doub Y N 156 DA C6 N6 sing N N 157 DA C6 N1 doub Y N 158 DA N6 H61 sing N N 159 DA N6 H62 sing N N 160 DA N1 C2 sing Y N 161 DA C2 N3 doub Y N 162 DA C2 H2 sing N N 163 DA N3 C4 sing Y N 164 DC OP3 P sing N N 165 DC OP3 HOP3 sing N N 166 DC P OP1 doub N N 167 DC P OP2 sing N N 168 DC P "O5'" sing N N 169 DC OP2 HOP2 sing N N 170 DC "O5'" "C5'" sing N N 171 DC "C5'" "C4'" sing N N 172 DC "C5'" "H5'" sing N N 173 DC "C5'" "H5''" sing N N 174 DC "C4'" "O4'" sing N N 175 DC "C4'" "C3'" sing N N 176 DC "C4'" "H4'" sing N N 177 DC "O4'" "C1'" sing N N 178 DC "C3'" "O3'" sing N N 179 DC "C3'" "C2'" sing N N 180 DC "C3'" "H3'" sing N N 181 DC "O3'" "HO3'" sing N N 182 DC "C2'" "C1'" sing N N 183 DC "C2'" "H2'" sing N N 184 DC "C2'" "H2''" sing N N 185 DC "C1'" N1 sing N N 186 DC "C1'" "H1'" sing N N 187 DC N1 C2 sing N N 188 DC N1 C6 sing N N 189 DC C2 O2 doub N N 190 DC C2 N3 sing N N 191 DC N3 C4 doub N N 192 DC C4 N4 sing N N 193 DC C4 C5 sing N N 194 DC N4 H41 sing N N 195 DC N4 H42 sing N N 196 DC C5 C6 doub N N 197 DC C5 H5 sing N N 198 DC C6 H6 sing N N 199 DG OP3 P sing N N 200 DG OP3 HOP3 sing N N 201 DG P OP1 doub N N 202 DG P OP2 sing N N 203 DG P "O5'" sing N N 204 DG OP2 HOP2 sing N N 205 DG "O5'" "C5'" sing N N 206 DG "C5'" "C4'" sing N N 207 DG "C5'" "H5'" sing N N 208 DG "C5'" "H5''" sing N N 209 DG "C4'" "O4'" sing N N 210 DG "C4'" "C3'" sing N N 211 DG "C4'" "H4'" sing N N 212 DG "O4'" "C1'" sing N N 213 DG "C3'" "O3'" sing N N 214 DG "C3'" "C2'" sing N N 215 DG "C3'" "H3'" sing N N 216 DG "O3'" "HO3'" sing N N 217 DG "C2'" "C1'" sing N N 218 DG "C2'" "H2'" sing N N 219 DG "C2'" "H2''" sing N N 220 DG "C1'" N9 sing N N 221 DG "C1'" "H1'" sing N N 222 DG N9 C8 sing Y N 223 DG N9 C4 sing Y N 224 DG C8 N7 doub Y N 225 DG C8 H8 sing N N 226 DG N7 C5 sing Y N 227 DG C5 C6 sing N N 228 DG C5 C4 doub Y N 229 DG C6 O6 doub N N 230 DG C6 N1 sing N N 231 DG N1 C2 sing N N 232 DG N1 H1 sing N N 233 DG C2 N2 sing N N 234 DG C2 N3 doub N N 235 DG N2 H21 sing N N 236 DG N2 H22 sing N N 237 DG N3 C4 sing N N 238 DT OP3 P sing N N 239 DT OP3 HOP3 sing N N 240 DT P OP1 doub N N 241 DT P OP2 sing N N 242 DT P "O5'" sing N N 243 DT OP2 HOP2 sing N N 244 DT "O5'" "C5'" sing N N 245 DT "C5'" "C4'" sing N N 246 DT "C5'" "H5'" sing N N 247 DT "C5'" "H5''" sing N N 248 DT "C4'" "O4'" sing N N 249 DT "C4'" "C3'" sing N N 250 DT "C4'" "H4'" sing N N 251 DT "O4'" "C1'" sing N N 252 DT "C3'" "O3'" sing N N 253 DT "C3'" "C2'" sing N N 254 DT "C3'" "H3'" sing N N 255 DT "O3'" "HO3'" sing N N 256 DT "C2'" "C1'" sing N N 257 DT "C2'" "H2'" sing N N 258 DT "C2'" "H2''" sing N N 259 DT "C1'" N1 sing N N 260 DT "C1'" "H1'" sing N N 261 DT N1 C2 sing N N 262 DT N1 C6 sing N N 263 DT C2 O2 doub N N 264 DT C2 N3 sing N N 265 DT N3 C4 sing N N 266 DT N3 H3 sing N N 267 DT C4 O4 doub N N 268 DT C4 C5 sing N N 269 DT C5 C7 sing N N 270 DT C5 C6 doub N N 271 DT C7 H71 sing N N 272 DT C7 H72 sing N N 273 DT C7 H73 sing N N 274 DT C6 H6 sing N N 275 GLN N CA sing N N 276 GLN N H sing N N 277 GLN N H2 sing N N 278 GLN CA C sing N N 279 GLN CA CB sing N N 280 GLN CA HA sing N N 281 GLN C O doub N N 282 GLN C OXT sing N N 283 GLN CB CG sing N N 284 GLN CB HB2 sing N N 285 GLN CB HB3 sing N N 286 GLN CG CD sing N N 287 GLN CG HG2 sing N N 288 GLN CG HG3 sing N N 289 GLN CD OE1 doub N N 290 GLN CD NE2 sing N N 291 GLN NE2 HE21 sing N N 292 GLN NE2 HE22 sing N N 293 GLN OXT HXT sing N N 294 GLU N CA sing N N 295 GLU N H sing N N 296 GLU N H2 sing N N 297 GLU CA C sing N N 298 GLU CA CB sing N N 299 GLU CA HA sing N N 300 GLU C O doub N N 301 GLU C OXT sing N N 302 GLU CB CG sing N N 303 GLU CB HB2 sing N N 304 GLU CB HB3 sing N N 305 GLU CG CD sing N N 306 GLU CG HG2 sing N N 307 GLU CG HG3 sing N N 308 GLU CD OE1 doub N N 309 GLU CD OE2 sing N N 310 GLU OE2 HE2 sing N N 311 GLU OXT HXT sing N N 312 GLY N CA sing N N 313 GLY N H sing N N 314 GLY N H2 sing N N 315 GLY CA C sing N N 316 GLY CA HA2 sing N N 317 GLY CA HA3 sing N N 318 GLY C O doub N N 319 GLY C OXT sing N N 320 GLY OXT HXT sing N N 321 HIS N CA sing N N 322 HIS N H sing N N 323 HIS N H2 sing N N 324 HIS CA C sing N N 325 HIS CA CB sing N N 326 HIS CA HA sing N N 327 HIS C O doub N N 328 HIS C OXT sing N N 329 HIS CB CG sing N N 330 HIS CB HB2 sing N N 331 HIS CB HB3 sing N N 332 HIS CG ND1 sing Y N 333 HIS CG CD2 doub Y N 334 HIS ND1 CE1 doub Y N 335 HIS ND1 HD1 sing N N 336 HIS CD2 NE2 sing Y N 337 HIS CD2 HD2 sing N N 338 HIS CE1 NE2 sing Y N 339 HIS CE1 HE1 sing N N 340 HIS NE2 HE2 sing N N 341 HIS OXT HXT sing N N 342 HOH O H1 sing N N 343 HOH O H2 sing N N 344 LEU N CA sing N N 345 LEU N H sing N N 346 LEU N H2 sing N N 347 LEU CA C sing N N 348 LEU CA CB sing N N 349 LEU CA HA sing N N 350 LEU C O doub N N 351 LEU C OXT sing N N 352 LEU CB CG sing N N 353 LEU CB HB2 sing N N 354 LEU CB HB3 sing N N 355 LEU CG CD1 sing N N 356 LEU CG CD2 sing N N 357 LEU CG HG sing N N 358 LEU CD1 HD11 sing N N 359 LEU CD1 HD12 sing N N 360 LEU CD1 HD13 sing N N 361 LEU CD2 HD21 sing N N 362 LEU CD2 HD22 sing N N 363 LEU CD2 HD23 sing N N 364 LEU OXT HXT sing N N 365 LYS N CA sing N N 366 LYS N H sing N N 367 LYS N H2 sing N N 368 LYS CA C sing N N 369 LYS CA CB sing N N 370 LYS CA HA sing N N 371 LYS C O doub N N 372 LYS C OXT sing N N 373 LYS CB CG sing N N 374 LYS CB HB2 sing N N 375 LYS CB HB3 sing N N 376 LYS CG CD sing N N 377 LYS CG HG2 sing N N 378 LYS CG HG3 sing N N 379 LYS CD CE sing N N 380 LYS CD HD2 sing N N 381 LYS CD HD3 sing N N 382 LYS CE NZ sing N N 383 LYS CE HE2 sing N N 384 LYS CE HE3 sing N N 385 LYS NZ HZ1 sing N N 386 LYS NZ HZ2 sing N N 387 LYS NZ HZ3 sing N N 388 LYS OXT HXT sing N N 389 MPD C1 C2 sing N N 390 MPD C1 H11 sing N N 391 MPD C1 H12 sing N N 392 MPD C1 H13 sing N N 393 MPD C2 O2 sing N N 394 MPD C2 CM sing N N 395 MPD C2 C3 sing N N 396 MPD O2 HO2 sing N N 397 MPD CM HM1 sing N N 398 MPD CM HM2 sing N N 399 MPD CM HM3 sing N N 400 MPD C3 C4 sing N N 401 MPD C3 H31 sing N N 402 MPD C3 H32 sing N N 403 MPD C4 O4 sing N N 404 MPD C4 C5 sing N N 405 MPD C4 H4 sing N N 406 MPD O4 HO4 sing N N 407 MPD C5 H51 sing N N 408 MPD C5 H52 sing N N 409 MPD C5 H53 sing N N 410 PHE N CA sing N N 411 PHE N H sing N N 412 PHE N H2 sing N N 413 PHE CA C sing N N 414 PHE CA CB sing N N 415 PHE CA HA sing N N 416 PHE C O doub N N 417 PHE C OXT sing N N 418 PHE CB CG sing N N 419 PHE CB HB2 sing N N 420 PHE CB HB3 sing N N 421 PHE CG CD1 doub Y N 422 PHE CG CD2 sing Y N 423 PHE CD1 CE1 sing Y N 424 PHE CD1 HD1 sing N N 425 PHE CD2 CE2 doub Y N 426 PHE CD2 HD2 sing N N 427 PHE CE1 CZ doub Y N 428 PHE CE1 HE1 sing N N 429 PHE CE2 CZ sing Y N 430 PHE CE2 HE2 sing N N 431 PHE CZ HZ sing N N 432 PHE OXT HXT sing N N 433 PRO N CA sing N N 434 PRO N CD sing N N 435 PRO N H sing N N 436 PRO CA C sing N N 437 PRO CA CB sing N N 438 PRO CA HA sing N N 439 PRO C O doub N N 440 PRO C OXT sing N N 441 PRO CB CG sing N N 442 PRO CB HB2 sing N N 443 PRO CB HB3 sing N N 444 PRO CG CD sing N N 445 PRO CG HG2 sing N N 446 PRO CG HG3 sing N N 447 PRO CD HD2 sing N N 448 PRO CD HD3 sing N N 449 PRO OXT HXT sing N N 450 SER N CA sing N N 451 SER N H sing N N 452 SER N H2 sing N N 453 SER CA C sing N N 454 SER CA CB sing N N 455 SER CA HA sing N N 456 SER C O doub N N 457 SER C OXT sing N N 458 SER CB OG sing N N 459 SER CB HB2 sing N N 460 SER CB HB3 sing N N 461 SER OG HG sing N N 462 SER OXT HXT sing N N 463 THR N CA sing N N 464 THR N H sing N N 465 THR N H2 sing N N 466 THR CA C sing N N 467 THR CA CB sing N N 468 THR CA HA sing N N 469 THR C O doub N N 470 THR C OXT sing N N 471 THR CB OG1 sing N N 472 THR CB CG2 sing N N 473 THR CB HB sing N N 474 THR OG1 HG1 sing N N 475 THR CG2 HG21 sing N N 476 THR CG2 HG22 sing N N 477 THR CG2 HG23 sing N N 478 THR OXT HXT sing N N 479 TYR N CA sing N N 480 TYR N H sing N N 481 TYR N H2 sing N N 482 TYR CA C sing N N 483 TYR CA CB sing N N 484 TYR CA HA sing N N 485 TYR C O doub N N 486 TYR C OXT sing N N 487 TYR CB CG sing N N 488 TYR CB HB2 sing N N 489 TYR CB HB3 sing N N 490 TYR CG CD1 doub Y N 491 TYR CG CD2 sing Y N 492 TYR CD1 CE1 sing Y N 493 TYR CD1 HD1 sing N N 494 TYR CD2 CE2 doub Y N 495 TYR CD2 HD2 sing N N 496 TYR CE1 CZ doub Y N 497 TYR CE1 HE1 sing N N 498 TYR CE2 CZ sing Y N 499 TYR CE2 HE2 sing N N 500 TYR CZ OH sing N N 501 TYR OH HH sing N N 502 TYR OXT HXT sing N N 503 VAL N CA sing N N 504 VAL N H sing N N 505 VAL N H2 sing N N 506 VAL CA C sing N N 507 VAL CA CB sing N N 508 VAL CA HA sing N N 509 VAL C O doub N N 510 VAL C OXT sing N N 511 VAL CB CG1 sing N N 512 VAL CB CG2 sing N N 513 VAL CB HB sing N N 514 VAL CG1 HG11 sing N N 515 VAL CG1 HG12 sing N N 516 VAL CG1 HG13 sing N N 517 VAL CG2 HG21 sing N N 518 VAL CG2 HG22 sing N N 519 VAL CG2 HG23 sing N N 520 VAL OXT HXT sing N N 521 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GZN 'double helix' 4GZN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 11 1_555 0.037 -0.074 -0.242 -20.105 -13.304 6.971 1 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DT 3 1_555 B DA 10 1_555 -0.108 -0.163 0.107 -8.313 -6.840 2.455 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 -0.112 -0.076 -0.172 1.986 -7.087 -3.274 3 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DG 5 1_555 B DC 8 1_555 -0.289 -0.192 0.066 -2.630 -10.325 -2.195 4 A_DG5:DC8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 7 1_555 0.306 -0.132 0.036 -3.673 -8.189 -2.506 5 A_DC6:DG7_B A 6 ? B 7 ? 19 1 1 A 5CM 7 1_555 B DG 6 1_555 0.039 -0.083 0.151 -10.451 -5.918 0.466 6 A_5CM7:DG6_B A 7 ? B 6 ? 19 1 1 A DG 8 1_555 B 5CM 5 1_555 -0.290 -0.059 -0.058 1.598 -11.637 2.783 7 A_DG8:5CM5_B A 8 ? B 5 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 0.246 -0.151 0.076 -2.855 -7.255 -1.877 8 A_DC9:DG4_B A 9 ? B 4 ? 19 1 1 A DA 10 1_555 B DT 3 1_555 0.116 -0.115 -0.113 -2.724 -1.684 0.236 9 A_DA10:DT3_B A 10 ? B 3 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 -0.283 -0.109 0.216 12.384 2.513 0.812 10 A_DG11:DC2_B A 11 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.699 -0.813 3.115 0.073 6.721 28.323 -2.979 1.407 2.849 13.497 -0.146 29.094 1 AA_DA2DT3:DA10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 10 1_555 A DT 4 1_555 B DA 9 1_555 -0.728 -0.241 3.134 2.393 1.993 30.687 -0.821 1.810 3.048 3.754 -4.507 30.840 2 AA_DT3DT4:DA9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 9 1_555 A DG 5 1_555 B DC 8 1_555 -0.687 0.259 3.457 -5.942 4.857 38.925 -0.230 0.264 3.526 7.204 8.812 39.646 3 AA_DT4DG5:DC8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B DC 8 1_555 A DC 6 1_555 B DG 7 1_555 0.160 -0.306 3.304 0.172 3.912 32.676 -1.211 -0.253 3.247 6.922 -0.304 32.903 4 AA_DG5DC6:DG7DC8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DC 6 1_555 B DG 7 1_555 A 5CM 7 1_555 B DG 6 1_555 1.452 0.088 3.409 4.042 4.115 34.658 -0.511 -1.760 3.538 6.849 -6.728 35.120 5 AA_DC65CM7:DG6DG7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A 5CM 7 1_555 B DG 6 1_555 A DG 8 1_555 B 5CM 5 1_555 -0.091 0.360 3.131 -0.106 11.965 30.577 -1.380 0.143 3.055 21.674 0.192 32.782 6 AA_5CM7DG8:5CM5DG6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DG 8 1_555 B 5CM 5 1_555 A DC 9 1_555 B DG 4 1_555 -1.103 -0.835 3.376 -2.576 3.903 31.723 -2.236 1.520 3.329 7.092 4.681 32.057 7 AA_DG8DC9:DG45CM5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DC 9 1_555 B DG 4 1_555 A DA 10 1_555 B DT 3 1_555 1.057 0.196 3.348 4.900 1.190 36.759 0.142 -0.976 3.460 1.875 -7.725 37.092 8 AA_DC9DA10:DT3DG4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DA 10 1_555 B DT 3 1_555 A DG 11 1_555 B DC 2 1_555 -0.120 -0.303 3.048 -3.199 2.644 24.577 -1.438 -0.613 2.990 6.156 7.448 24.920 9 AA_DA10DG11:DC2DT3_BB A 10 ? B 3 ? A 11 ? B 2 ? # _atom_sites.entry_id 4GZN _atom_sites.fract_transf_matrix[1][1] 0.024864 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016490 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010404 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S ZN # loop_