HEADER VIRAL PROTEIN 06-SEP-12 4GZQ TITLE N2 NEURAMINIDASE OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH SIALIC TITLE 2 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUERAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 119210; SOURCE 4 STRAIN: A/TANZANIA/205/2010(H3N2); SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFASTBACHT-A KEYWDS BETA-PROPELLA, INFLUENZA VIRUS, NEURAMINIDASE, HEMAGGLUTININ, KEYWDS 2 HEMADSORPTION, VIRAL INFECTION, SIALIC ACID RECEPTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU,I.A.WILSON REVDAT 4 13-SEP-23 4GZQ 1 HETSYN REVDAT 3 29-JUL-20 4GZQ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-DEC-12 4GZQ 1 JRNL REVDAT 1 17-OCT-12 4GZQ 0 JRNL AUTH X.ZHU,R.MCBRIDE,C.M.NYCHOLAT,W.YU,J.C.PAULSON,I.A.WILSON JRNL TITL INFLUENZA VIRUS NEURAMINIDASES WITH REDUCED ENZYMATIC JRNL TITL 2 ACTIVITY THAT AVIDLY BIND SIALIC ACID RECEPTORS. JRNL REF J.VIROL. V. 86 13371 2012 JRNL REFN ISSN 0022-538X JRNL PMID 23015718 JRNL DOI 10.1128/JVI.01426-12 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 21184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.05000 REMARK 3 B22 (A**2) : -4.05000 REMARK 3 B33 (A**2) : 8.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.373 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3266 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4455 ; 1.433 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 7.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;34.334 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;16.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2428 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1917 ; 0.515 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3102 ; 0.950 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 1.412 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1353 ; 2.297 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GZO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 17-25% PEG 8000, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.96550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.96550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.96550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.96550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.96550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.96550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.93100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 54.96550 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 54.96550 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -54.96550 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 54.96550 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 PRO A 79 REMARK 465 SER A 80 REMARK 465 ARG A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 793 O HOH A 794 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 88 43.60 -78.65 REMARK 500 ASN A 104 21.04 49.82 REMARK 500 ASN A 142 137.65 173.75 REMARK 500 ASN A 200 37.04 -160.87 REMARK 500 THR A 225 -155.19 -143.71 REMARK 500 ASN A 234 20.37 48.39 REMARK 500 ILE A 262 106.58 -52.95 REMARK 500 TYR A 284 133.47 -33.50 REMARK 500 CYS A 291 -162.12 -112.41 REMARK 500 TRP A 295 -77.28 -102.34 REMARK 500 SER A 315 -152.69 -169.11 REMARK 500 SER A 319 119.15 -21.21 REMARK 500 GLU A 344 18.38 58.74 REMARK 500 HIS A 347 -164.12 67.60 REMARK 500 ASP A 356 98.68 -162.32 REMARK 500 SER A 404 -142.60 -120.76 REMARK 500 MET A 467 148.01 -39.59 REMARK 500 PRO A 468 94.32 -26.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 91.5 REMARK 620 3 ASP A 324 OD2 84.2 99.8 REMARK 620 4 GLY A 345 O 99.8 81.3 175.8 REMARK 620 5 HIS A 347 O 84.3 153.1 106.1 73.3 REMARK 620 6 HOH A 725 O 169.7 98.7 95.1 80.7 86.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GZO RELATED DB: PDB REMARK 900 RELATED ID: 4GZP RELATED DB: PDB REMARK 900 RELATED ID: 4GZS RELATED DB: PDB REMARK 900 RELATED ID: 4GZT RELATED DB: PDB REMARK 900 RELATED ID: 4GZW RELATED DB: PDB REMARK 900 RELATED ID: 4GZX RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE GISAID ACCESSION NUMBER IS EPI342198 FOR REMARK 999 THIS SEQUENCE. DBREF 4GZQ A 77 469 PDB 4GZQ 4GZQ 77 469 SEQRES 1 A 393 GLY SER PRO SER ARG ALA GLU TYR ARG ASN TRP SER LYS SEQRES 2 A 393 PRO GLN CYS ASP ILE THR GLY PHE ALA PRO PHE SER LYS SEQRES 3 A 393 ASP ASN SER ILE ARG LEU SER ALA GLY GLY ASP ILE TRP SEQRES 4 A 393 VAL THR ARG GLU PRO TYR VAL SER CYS ASP PRO ASP LYS SEQRES 5 A 393 CYS TYR GLN PHE ALA LEU GLY GLN GLY THR THR LEU ASN SEQRES 6 A 393 ASN VAL HIS SER ASN ASN THR VAL ARG ASP ARG THR PRO SEQRES 7 A 393 TYR ARG THR LEU LEU MET ASN GLU LEU GLY VAL PRO PHE SEQRES 8 A 393 HIS LEU GLY THR LYS GLN VAL CYS ILE ALA TRP SER SER SEQRES 9 A 393 SER SER CYS HIS ASP GLY LYS ALA TRP LEU HIS VAL CYS SEQRES 10 A 393 ILE THR GLY ASP ASP LYS ASN ALA THR ALA SER PHE ILE SEQRES 11 A 393 TYR ASN GLY ARG LEU VAL ASP SER VAL VAL SER TRP SER SEQRES 12 A 393 LYS GLU ILE LEU ARG THR GLN GLU SER GLU CYS VAL CYS SEQRES 13 A 393 ILE ASN GLY THR CYS THR VAL VAL MET THR ASP GLY SER SEQRES 14 A 393 ALA SER GLY LYS ALA ASP THR LYS ILE LEU PHE ILE GLU SEQRES 15 A 393 GLU GLY LYS ILE VAL HIS THR SER THR LEU SER GLY SER SEQRES 16 A 393 ALA GLN HIS VAL GLU GLU CYS SER CYS TYR PRO ARG TYR SEQRES 17 A 393 PRO GLY VAL ARG CYS VAL CYS ARG ASP ASN TRP LYS GLY SEQRES 18 A 393 SER ASN ARG PRO ILE VAL ASP ILE ASN ILE LYS ASP HIS SEQRES 19 A 393 SER ILE VAL SER SER TYR VAL CYS SER GLY LEU VAL GLY SEQRES 20 A 393 ASP THR PRO ARG LYS ASN ASP SER SER SER SER SER HIS SEQRES 21 A 393 CYS LEU ASP PRO ASN ASN GLU GLU GLY GLY HIS GLY VAL SEQRES 22 A 393 LYS GLY TRP ALA PHE ASP ASP GLY ASN ASP VAL TRP MET SEQRES 23 A 393 GLY ARG THR ILE ASN GLU THR SER ARG LEU GLY TYR GLU SEQRES 24 A 393 THR PHE LYS VAL ILE GLU GLY TRP SER ASN PRO LYS SER SEQRES 25 A 393 LYS LEU GLN ILE ASN ARG GLN VAL ILE VAL ASP ARG GLY SEQRES 26 A 393 ASN ARG SER GLY TYR SER GLY ILE PHE SER VAL GLU GLY SEQRES 27 A 393 LYS SER CYS ILE ASN ARG CYS PHE TYR VAL GLU LEU ILE SEQRES 28 A 393 ARG GLY ARG LYS GLU GLU THR GLU VAL LEU TRP THR SER SEQRES 29 A 393 ASN SER ILE VAL VAL PHE CYS GLY THR SER GLY THR TYR SEQRES 30 A 393 GLY THR GLY SER TRP PRO ASP GLY ALA ASP LEU ASN LEU SEQRES 31 A 393 MET PRO ILE MODRES 4GZQ ASN A 200 ASN GLYCOSYLATION SITE MODRES 4GZQ ASN A 367 ASN GLYCOSYLATION SITE MODRES 4GZQ ASN A 146 ASN GLYCOSYLATION SITE MODRES 4GZQ ASN A 234 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET SIA A 501 21 HET NAG A 507 14 HET NAG A 508 14 HET NAG A 509 14 HET CA A 510 1 HET CA A 511 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 3 SIA C11 H19 N O9 FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *206(H2 O) HELIX 1 1 ASN A 104 SER A 109 1 6 HELIX 2 2 ASN A 142 ASN A 146 5 5 SHEET 1 A 4 GLY A 96 LYS A 102 0 SHEET 2 A 4 THR A 439 THR A 449 -1 O CYS A 447 N ALA A 98 SHEET 3 A 4 ILE A 418 GLY A 429 -1 N LEU A 426 O SER A 442 SHEET 4 A 4 SER A 407 GLU A 413 -1 N PHE A 410 O CYS A 421 SHEET 1 B 4 TRP A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 THR A 139 -1 O PHE A 132 N TYR A 121 SHEET 3 B 4 THR A 157 GLU A 162 -1 O LEU A 159 N ALA A 133 SHEET 4 B 4 LYS A 172 ILE A 176 -1 O VAL A 174 N LEU A 158 SHEET 1 C 4 SER A 179 HIS A 184 0 SHEET 2 C 4 TRP A 189 THR A 195 -1 O VAL A 192 N SER A 181 SHEET 3 C 4 THR A 202 TYR A 207 -1 O SER A 204 N CYS A 193 SHEET 4 C 4 ARG A 210 VAL A 216 -1 O ASP A 213 N PHE A 205 SHEET 1 D 4 VAL A 231 ILE A 233 0 SHEET 2 D 4 THR A 236 GLY A 244 -1 O THR A 238 N VAL A 231 SHEET 3 D 4 ALA A 250 GLU A 258 -1 O ILE A 257 N CYS A 237 SHEET 4 D 4 LYS A 261 THR A 267 -1 O SER A 266 N ILE A 254 SHEET 1 E 4 GLU A 276 ARG A 283 0 SHEET 2 E 4 GLY A 286 ARG A 292 -1 O ARG A 288 N TYR A 281 SHEET 3 E 4 PRO A 301 ILE A 305 -1 O PRO A 301 N CYS A 291 SHEET 4 E 4 ILE A 312 TYR A 316 -1 O VAL A 313 N ASP A 304 SHEET 1 F 4 ALA A 353 ASP A 356 0 SHEET 2 F 4 ASP A 359 ARG A 364 -1 O ASP A 359 N ASP A 356 SHEET 3 F 4 LEU A 372 ILE A 380 -1 O VAL A 379 N VAL A 360 SHEET 4 F 4 LEU A 390 ARG A 403 -1 O ASN A 402 N GLY A 373 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.04 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.05 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.02 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.04 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.05 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.08 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.05 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.05 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.07 LINK ND2 ASN A 146 C1 NAG A 507 1555 1555 1.45 LINK ND2 ASN A 200 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG A 508 1555 1555 1.45 LINK ND2 ASN A 367 C1 NAG A 509 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.46 LINK O ASP A 293 CA CA A 510 1555 1555 2.37 LINK O GLY A 297 CA CA A 510 1555 1555 2.39 LINK OD2 ASP A 324 CA CA A 510 1555 1555 2.38 LINK O GLY A 345 CA CA A 510 1555 1555 2.56 LINK O HIS A 347 CA CA A 510 1555 1555 2.40 LINK CA CA A 510 O HOH A 725 1555 1555 2.37 CISPEP 1 TYR A 284 PRO A 285 0 8.69 CISPEP 2 THR A 325 PRO A 326 0 8.20 CISPEP 3 ARG A 430 LYS A 431 0 -1.80 CRYST1 109.931 109.931 79.318 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012607 0.00000