HEADER TRANSFERASE 07-SEP-12 4H05 TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE-3'-PHOSPHOTRANSFERASE OF TYPE VIII COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE-O-PHOSPHOTRANSFERASE VIII; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.95; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RIMOSUS; SOURCE 3 ORGANISM_TAXID: 1927; SOURCE 4 STRAIN: ATCC10970; SOURCE 5 GENE: AAG11411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS PROTEIN KINASE, ATP BINDING, AMINOGLYCOSIDE PHOSPHOTRANSFERASE VIII; KEYWDS 2 AMINOGLYCOSIDE ANTIBIOTIC, PHOSPHORILATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,M.A.GORBACHEVA,V.N.DANILENKO,M.G.ALEKSEEVA, AUTHOR 2 D.A.KORZHENEVSKIY,P.V.DOROVATOVSKIY,A.V.LIPKIN,V.O.POPOV REVDAT 4 13-SEP-23 4H05 1 SEQADV REVDAT 3 20-SEP-17 4H05 1 REMARK REVDAT 2 14-SEP-16 4H05 1 JRNL REVDAT 1 09-APR-14 4H05 0 JRNL AUTH K.M.BOYKO,M.A.GORBACHEVA,D.A.KORZHENEVSKIY,M.G.ALEKSEEVA, JRNL AUTH 2 D.A.MAVLETOVA,N.V.ZAKHAREVICH,S.M.ELIZAROV,N.N.RUDAKOVA, JRNL AUTH 3 V.N.DANILENKO,V.O.POPOV JRNL TITL STRUCTURAL CHARACTERIZATION OF THE NOVEL AMINOGLYCOSIDE JRNL TITL 2 PHOSPHOTRANSFERASE APHVIII FROM STREPTOMYCES RIMOSUS WITH JRNL TITL 3 ENZYMATIC ACTIVITY MODULATED BY PHOSPHORYLATION. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 477 595 2016 JRNL REFN ISSN 0006-291X JRNL PMID 27338640 JRNL DOI 10.1016/J.BBRC.2016.06.097 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4228 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2907 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5748 ; 2.348 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6967 ; 1.422 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 8.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;34.399 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;20.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;21.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4874 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 959 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4H05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.985 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 28.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3R78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE; 18% PEG20K, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.67000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 GLU A 169 OE1 OE2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 HIS B -3 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 46 CB CG CD1 CD2 REMARK 470 ARG B 80 NE CZ NH1 NH2 REMARK 470 GLU B 150 CD OE1 OE2 REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 TRP B 159 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 159 CZ3 CH2 REMARK 470 ARG B 163 NE CZ NH1 NH2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 0 CG HIS A 0 CD2 0.058 REMARK 500 TRP A 122 CE2 TRP A 122 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 35 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU A 59 CB - CG - CD1 ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU A 62 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 115 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU A 117 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU A 192 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 LEU A 202 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 9 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ALA B 45 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 LEU B 117 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG B 129 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 172 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 172 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP B 175 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG B 207 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 213 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 261 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 261 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -1 -60.83 -168.53 REMARK 500 ALA A 24 -137.91 54.37 REMARK 500 SER A 25 -106.40 -60.45 REMARK 500 LEU A 46 -115.17 98.04 REMARK 500 GLU A 79 151.51 -43.76 REMARK 500 ARG A 80 -68.85 85.72 REMARK 500 CYS A 197 18.18 58.82 REMARK 500 TRP A 231 73.30 -100.39 REMARK 500 PHE A 232 -135.11 -125.36 REMARK 500 ALA A 251 38.44 116.91 REMARK 500 TYR B 12 56.42 -118.81 REMARK 500 GLU B 21 102.13 40.25 REMARK 500 ASP B 22 -137.37 -69.72 REMARK 500 ALA B 45 -47.23 157.93 REMARK 500 LEU B 46 68.51 118.70 REMARK 500 ASP B 78 -159.21 -151.15 REMARK 500 ARG B 100 -39.41 -39.97 REMARK 500 GLU B 154 -32.15 -39.99 REMARK 500 LYS B 157 118.44 4.85 REMARK 500 ASP B 184 56.30 -141.74 REMARK 500 PHE B 232 -122.66 -134.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 35 GLY A 36 -39.50 REMARK 500 ARG A 246 GLY A 247 40.98 REMARK 500 GLU B 228 ASP B 229 -46.00 REMARK 500 GLY B 247 TRP B 248 -143.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 4H05 A 1 267 UNP Q9F9M5 Q9F9M5_STRRM 1 267 DBREF 4H05 B 1 267 UNP Q9F9M5 Q9F9M5_STRRM 1 267 SEQADV 4H05 HIS A -5 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS A -4 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS A -3 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS A -2 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS A -1 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS A 0 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B -5 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B -4 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B -3 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B -2 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B -1 UNP Q9F9M5 EXPRESSION TAG SEQADV 4H05 HIS B 0 UNP Q9F9M5 EXPRESSION TAG SEQRES 1 A 273 HIS HIS HIS HIS HIS HIS MET ASP ASP ALA LEU ARG ALA SEQRES 2 A 273 LEU ARG GLY ARG TYR PRO GLY CYS GLU TRP VAL VAL VAL SEQRES 3 A 273 GLU ASP GLY ALA SER GLY ALA GLY VAL TYR ARG LEU ARG SEQRES 4 A 273 GLY GLY GLY ARG GLU LEU PHE VAL LYS VAL ALA ALA LEU SEQRES 5 A 273 GLY ALA GLY VAL GLY LEU LEU GLY GLU ALA GLU ARG LEU SEQRES 6 A 273 VAL TRP LEU ALA GLU VAL GLY ILE PRO VAL PRO ARG VAL SEQRES 7 A 273 VAL GLU GLY GLY GLY ASP GLU ARG VAL ALA TRP LEU VAL SEQRES 8 A 273 THR GLU ALA VAL PRO GLY ARG PRO ALA SER ALA ARG TRP SEQRES 9 A 273 PRO ARG GLU GLN ARG LEU ASP VAL ALA VAL ALA LEU ALA SEQRES 10 A 273 GLY LEU ALA ARG SER LEU HIS ALA LEU ASP TRP GLU ARG SEQRES 11 A 273 CYS PRO PHE ASP ARG SER LEU ALA VAL THR VAL PRO GLN SEQRES 12 A 273 ALA ALA ARG ALA VAL ALA GLU GLY SER VAL ASP LEU GLU SEQRES 13 A 273 ASP LEU ASP GLU GLU ARG LYS GLY TRP SER GLY GLU ARG SEQRES 14 A 273 LEU LEU ALA GLU LEU GLU ARG THR ARG PRO ALA ASP GLU SEQRES 15 A 273 ASP LEU ALA VAL CYS HIS GLY ASP LEU CYS PRO ASP ASN SEQRES 16 A 273 VAL LEU LEU ASP PRO ARG THR CYS GLU VAL THR GLY LEU SEQRES 17 A 273 ILE ASP VAL GLY ARG VAL GLY ARG ALA ASP ARG HIS SER SEQRES 18 A 273 ASP LEU ALA LEU VAL LEU ARG GLU LEU ALA HIS GLU GLU SEQRES 19 A 273 ASP PRO TRP PHE GLY PRO GLU CYS SER ALA ALA PHE LEU SEQRES 20 A 273 ARG GLU TYR GLY ARG GLY TRP ASP GLY ALA VAL SER GLU SEQRES 21 A 273 GLU LYS LEU ALA PHE TYR ARG LEU LEU ASP GLU PHE PHE SEQRES 1 B 273 HIS HIS HIS HIS HIS HIS MET ASP ASP ALA LEU ARG ALA SEQRES 2 B 273 LEU ARG GLY ARG TYR PRO GLY CYS GLU TRP VAL VAL VAL SEQRES 3 B 273 GLU ASP GLY ALA SER GLY ALA GLY VAL TYR ARG LEU ARG SEQRES 4 B 273 GLY GLY GLY ARG GLU LEU PHE VAL LYS VAL ALA ALA LEU SEQRES 5 B 273 GLY ALA GLY VAL GLY LEU LEU GLY GLU ALA GLU ARG LEU SEQRES 6 B 273 VAL TRP LEU ALA GLU VAL GLY ILE PRO VAL PRO ARG VAL SEQRES 7 B 273 VAL GLU GLY GLY GLY ASP GLU ARG VAL ALA TRP LEU VAL SEQRES 8 B 273 THR GLU ALA VAL PRO GLY ARG PRO ALA SER ALA ARG TRP SEQRES 9 B 273 PRO ARG GLU GLN ARG LEU ASP VAL ALA VAL ALA LEU ALA SEQRES 10 B 273 GLY LEU ALA ARG SER LEU HIS ALA LEU ASP TRP GLU ARG SEQRES 11 B 273 CYS PRO PHE ASP ARG SER LEU ALA VAL THR VAL PRO GLN SEQRES 12 B 273 ALA ALA ARG ALA VAL ALA GLU GLY SER VAL ASP LEU GLU SEQRES 13 B 273 ASP LEU ASP GLU GLU ARG LYS GLY TRP SER GLY GLU ARG SEQRES 14 B 273 LEU LEU ALA GLU LEU GLU ARG THR ARG PRO ALA ASP GLU SEQRES 15 B 273 ASP LEU ALA VAL CYS HIS GLY ASP LEU CYS PRO ASP ASN SEQRES 16 B 273 VAL LEU LEU ASP PRO ARG THR CYS GLU VAL THR GLY LEU SEQRES 17 B 273 ILE ASP VAL GLY ARG VAL GLY ARG ALA ASP ARG HIS SER SEQRES 18 B 273 ASP LEU ALA LEU VAL LEU ARG GLU LEU ALA HIS GLU GLU SEQRES 19 B 273 ASP PRO TRP PHE GLY PRO GLU CYS SER ALA ALA PHE LEU SEQRES 20 B 273 ARG GLU TYR GLY ARG GLY TRP ASP GLY ALA VAL SER GLU SEQRES 21 B 273 GLU LYS LEU ALA PHE TYR ARG LEU LEU ASP GLU PHE PHE FORMUL 3 HOH *94(H2 O) HELIX 1 1 HIS A -1 TYR A 12 1 14 HELIX 2 2 GLY A 47 GLY A 66 1 20 HELIX 3 3 GLN A 102 ALA A 119 1 18 HELIX 4 4 ASP A 121 CYS A 125 5 5 HELIX 5 5 SER A 130 GLU A 144 1 15 HELIX 6 6 ASP A 148 LEU A 152 5 5 HELIX 7 7 ASP A 153 LYS A 157 5 5 HELIX 8 8 SER A 160 ARG A 172 1 13 HELIX 9 9 CYS A 186 ASP A 188 5 3 HELIX 10 10 ARG A 213 ALA A 225 1 13 HELIX 11 11 GLY A 233 ARG A 246 1 14 HELIX 12 12 SER A 253 GLU A 265 1 13 HELIX 13 13 HIS B -2 TYR B 12 1 15 HELIX 14 14 GLY B 23 ALA B 27 5 5 HELIX 15 15 GLY B 49 VAL B 65 1 17 HELIX 16 16 PRO B 99 ALA B 119 1 21 HELIX 17 17 ASP B 121 CYS B 125 5 5 HELIX 18 18 SER B 130 GLU B 144 1 15 HELIX 19 19 SER B 160 THR B 171 1 12 HELIX 20 20 CYS B 186 ASP B 188 5 3 HELIX 21 21 ARG B 213 ALA B 225 1 13 HELIX 22 22 GLY B 233 GLY B 247 1 15 HELIX 23 23 SER B 253 GLU B 265 1 13 SHEET 1 A 5 GLU A 16 GLU A 21 0 SHEET 2 A 5 VAL A 29 GLY A 34 -1 O ARG A 31 N VAL A 18 SHEET 3 A 5 ARG A 37 LEU A 46 -1 O VAL A 41 N TYR A 30 SHEET 4 A 5 ARG A 80 GLU A 87 -1 O ARG A 80 N LEU A 46 SHEET 5 A 5 VAL A 72 GLY A 77 -1 N GLU A 74 O VAL A 85 SHEET 1 B 3 ARG A 92 PRO A 93 0 SHEET 2 B 3 VAL A 190 LEU A 192 -1 O LEU A 192 N ARG A 92 SHEET 3 B 3 VAL A 199 LEU A 202 -1 O GLY A 201 N LEU A 191 SHEET 1 C 2 LEU A 178 CYS A 181 0 SHEET 2 C 2 GLY A 209 ASP A 212 -1 O GLY A 209 N CYS A 181 SHEET 1 D 5 GLU B 16 VAL B 20 0 SHEET 2 D 5 GLY B 28 ARG B 33 -1 O ARG B 33 N GLU B 16 SHEET 3 D 5 GLU B 38 ALA B 44 -1 O VAL B 41 N TYR B 30 SHEET 4 D 5 ALA B 82 GLU B 87 -1 O THR B 86 N PHE B 40 SHEET 5 D 5 VAL B 72 GLY B 77 -1 N GLU B 74 O VAL B 85 SHEET 1 E 3 ARG B 92 PRO B 93 0 SHEET 2 E 3 VAL B 190 LEU B 192 -1 O LEU B 192 N ARG B 92 SHEET 3 E 3 VAL B 199 LEU B 202 -1 O GLY B 201 N LEU B 191 SHEET 1 F 2 LEU B 178 CYS B 181 0 SHEET 2 F 2 GLY B 209 ASP B 212 -1 O GLY B 209 N CYS B 181 CISPEP 1 ASP A 229 PRO A 230 0 6.05 CISPEP 2 GLY A 250 ALA A 251 0 9.17 CISPEP 3 GLY B 34 GLY B 35 0 -7.49 CISPEP 4 GLY B 35 GLY B 36 0 -11.13 CISPEP 5 ALA B 44 ALA B 45 0 -1.79 CISPEP 6 ASP B 229 PRO B 230 0 12.16 CRYST1 51.340 103.340 53.680 90.00 94.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019478 0.000000 0.001485 0.00000 SCALE2 0.000000 0.009677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018683 0.00000