HEADER METAL TRANSPORT 10-SEP-12 4H0W TITLE BISMUTH BOUND HUMAN SERUM TRANSFERRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSFERRIN, BETA-1 METAL-BINDING GLOBULIN, SIDEROPHILIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: BLOOD KEYWDS BISMUTH, IRON TRANSPORTER, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.YANG,H.ZHANG,M.WANG,Q.HAO,H.SUN REVDAT 5 15-NOV-23 4H0W 1 LINK ATOM REVDAT 4 13-SEP-23 4H0W 1 HETSYN REVDAT 3 29-JUL-20 4H0W 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 16-JAN-13 4H0W 1 JRNL REVDAT 1 26-DEC-12 4H0W 0 JRNL AUTH N.YANG,H.ZHANG,M.WANG,Q.HAO,H.SUN JRNL TITL IRON AND BISMUTH BOUND HUMAN SERUM TRANSFERRIN REVEALS A JRNL TITL 2 PARTIALLY-OPENED CONFORMATION IN THE N-LOBE. JRNL REF SCI REP V. 2 999 2012 JRNL REFN ESSN 2045-2322 JRNL PMID 23256035 JRNL DOI 10.1038/SREP00999 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1960 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5438 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7361 ; 1.123 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 5.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;35.150 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 918 ;15.564 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.803 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4150 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3382 ; 1.534 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5408 ; 2.405 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2056 ; 2.168 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1953 ; 3.264 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5181 16.0621 -9.5276 REMARK 3 T TENSOR REMARK 3 T11: 0.3316 T22: 0.1279 REMARK 3 T33: 0.2266 T12: 0.0325 REMARK 3 T13: 0.1356 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 6.0118 L22: 3.4470 REMARK 3 L33: 4.5672 L12: -0.6584 REMARK 3 L13: -2.8657 L23: 0.7385 REMARK 3 S TENSOR REMARK 3 S11: 0.5178 S12: 0.4648 S13: 0.6506 REMARK 3 S21: -0.3036 S22: 0.0162 S23: -0.2545 REMARK 3 S31: -0.9286 S32: -0.1804 S33: -0.5340 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9300 12.8755 21.4193 REMARK 3 T TENSOR REMARK 3 T11: 0.0515 T22: 0.1252 REMARK 3 T33: 0.1324 T12: -0.0110 REMARK 3 T13: 0.0190 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 3.8339 REMARK 3 L33: 7.2304 L12: -0.0402 REMARK 3 L13: -1.0731 L23: 0.8628 REMARK 3 S TENSOR REMARK 3 S11: 0.1574 S12: 0.0768 S13: 0.2212 REMARK 3 S21: -0.2753 S22: 0.0011 S23: 0.0087 REMARK 3 S31: -0.3451 S32: 0.1720 S33: -0.1585 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3024 8.1672 23.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.2410 REMARK 3 T33: 0.0935 T12: 0.0262 REMARK 3 T13: 0.0418 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.9248 L22: 4.5411 REMARK 3 L33: 4.9341 L12: -0.3526 REMARK 3 L13: -0.5973 L23: -0.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.1087 S13: 0.3018 REMARK 3 S21: -0.0355 S22: -0.0160 S23: -0.4825 REMARK 3 S31: -0.0546 S32: 0.6583 S33: -0.0896 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3161 9.6510 -0.9529 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.0203 REMARK 3 T33: 0.1036 T12: -0.0033 REMARK 3 T13: -0.0375 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 7.9371 L22: 2.6943 REMARK 3 L33: 8.4614 L12: -1.0075 REMARK 3 L13: -4.2461 L23: 1.4880 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.2795 S13: 0.1219 REMARK 3 S21: -0.1077 S22: 0.0862 S23: -0.0994 REMARK 3 S31: -0.3358 S32: -0.0366 S33: -0.0979 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9146 -11.1972 -5.9202 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1662 REMARK 3 T33: 0.1325 T12: -0.0825 REMARK 3 T13: -0.0705 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 3.0986 L22: 2.6088 REMARK 3 L33: 3.3516 L12: 0.7690 REMARK 3 L13: 1.4519 L23: 1.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.2535 S12: -0.2769 S13: -0.2183 REMARK 3 S21: 0.2117 S22: -0.1645 S23: -0.0242 REMARK 3 S31: 0.1847 S32: -0.1088 S33: -0.0889 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 591 A 625 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1365 -0.4041 11.4392 REMARK 3 T TENSOR REMARK 3 T11: 0.5325 T22: 0.6395 REMARK 3 T33: 0.4597 T12: -0.1935 REMARK 3 T13: 0.0375 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 28.8906 L22: 8.8256 REMARK 3 L33: 9.9756 L12: 3.5349 REMARK 3 L13: 8.4460 L23: 2.6292 REMARK 3 S TENSOR REMARK 3 S11: 0.5397 S12: -1.5047 S13: -0.2178 REMARK 3 S21: 0.1589 S22: -0.3825 S23: 1.7061 REMARK 3 S31: 0.1063 S32: -1.0939 S33: -0.1572 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 626 A 679 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0428 -9.7074 3.8877 REMARK 3 T TENSOR REMARK 3 T11: 0.6291 T22: 0.3221 REMARK 3 T33: 0.1406 T12: -0.1747 REMARK 3 T13: -0.1788 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 6.9831 L22: 3.3651 REMARK 3 L33: 0.2397 L12: 1.3655 REMARK 3 L13: 0.6825 L23: 0.8571 REMARK 3 S TENSOR REMARK 3 S11: 0.4870 S12: -0.5122 S13: -0.6880 REMARK 3 S21: 0.4949 S22: -0.3023 S23: -0.5169 REMARK 3 S31: 0.3764 S32: -0.1459 S33: -0.1848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4H0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000074878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M HEPES, 15% PEG3000, PH 7.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 271K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.95350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.51600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.08250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.51600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.95350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.08250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 413 C2 NAG A 705 1.83 REMARK 500 O GLN A 108 O HOH A 917 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -120.56 -101.27 REMARK 500 GLN A 92 69.55 -115.97 REMARK 500 SER A 125 -71.88 -71.12 REMARK 500 TRP A 128 -69.98 -150.73 REMARK 500 CYS A 161 -5.21 80.32 REMARK 500 SER A 180 158.74 178.75 REMARK 500 SER A 287 140.72 -171.09 REMARK 500 LEU A 294 -51.89 74.53 REMARK 500 LYS A 340 -114.71 16.12 REMARK 500 SER A 348 -173.22 62.51 REMARK 500 ALA A 453 156.47 178.98 REMARK 500 TRP A 460 -71.36 -142.83 REMARK 500 LYS A 527 -34.48 -137.27 REMARK 500 GLU A 573 31.49 -97.75 REMARK 500 THR A 613 -74.95 -70.72 REMARK 500 LEU A 630 -53.12 67.31 REMARK 500 HIS A 642 -108.70 55.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BS3 A 703 BI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 188 OH REMARK 620 2 CO3 A 704 O2 93.6 REMARK 620 3 CO3 A 704 O3 83.4 47.7 REMARK 620 4 NTA A 706 OXT 168.9 76.0 86.5 REMARK 620 5 NTA A 706 O8 65.1 145.6 143.7 125.9 REMARK 620 6 NTA A 706 O13 104.7 74.3 122.0 76.6 84.9 REMARK 620 7 HOH A 901 O 71.3 143.5 96.6 114.9 57.5 140.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 TYR A 426 OH 91.6 REMARK 620 3 TYR A 517 OH 169.5 97.4 REMARK 620 4 HIS A 585 NE2 92.4 98.1 80.9 REMARK 620 5 CO3 A 702 O3 79.4 87.9 106.3 170.0 REMARK 620 6 CO3 A 702 O2 87.5 149.2 87.7 112.6 61.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QYT RELATED DB: PDB REMARK 900 DIFERRIC HUMAN SERUM TRANSFERRIN WITH PARTIALLY OPENED N-LOBE DBREF 4H0W A 1 679 UNP P02787 TRFE_HUMAN 20 698 SEQRES 1 A 679 VAL PRO ASP LYS THR VAL ARG TRP CYS ALA VAL SER GLU SEQRES 2 A 679 HIS GLU ALA THR LYS CYS GLN SER PHE ARG ASP HIS MET SEQRES 3 A 679 LYS SER VAL ILE PRO SER ASP GLY PRO SER VAL ALA CYS SEQRES 4 A 679 VAL LYS LYS ALA SER TYR LEU ASP CYS ILE ARG ALA ILE SEQRES 5 A 679 ALA ALA ASN GLU ALA ASP ALA VAL THR LEU ASP ALA GLY SEQRES 6 A 679 LEU VAL TYR ASP ALA TYR LEU ALA PRO ASN ASN LEU LYS SEQRES 7 A 679 PRO VAL VAL ALA GLU PHE TYR GLY SER LYS GLU ASP PRO SEQRES 8 A 679 GLN THR PHE TYR TYR ALA VAL ALA VAL VAL LYS LYS ASP SEQRES 9 A 679 SER GLY PHE GLN MET ASN GLN LEU ARG GLY LYS LYS SER SEQRES 10 A 679 CYS HIS THR GLY LEU GLY ARG SER ALA GLY TRP ASN ILE SEQRES 11 A 679 PRO ILE GLY LEU LEU TYR CYS ASP LEU PRO GLU PRO ARG SEQRES 12 A 679 LYS PRO LEU GLU LYS ALA VAL ALA ASN PHE PHE SER GLY SEQRES 13 A 679 SER CYS ALA PRO CYS ALA ASP GLY THR ASP PHE PRO GLN SEQRES 14 A 679 LEU CYS GLN LEU CYS PRO GLY CYS GLY CYS SER THR LEU SEQRES 15 A 679 ASN GLN TYR PHE GLY TYR SER GLY ALA PHE LYS CYS LEU SEQRES 16 A 679 LYS ASP GLY ALA GLY ASP VAL ALA PHE VAL LYS HIS SER SEQRES 17 A 679 THR ILE PHE GLU ASN LEU ALA ASN LYS ALA ASP ARG ASP SEQRES 18 A 679 GLN TYR GLU LEU LEU CYS LEU ASP ASN THR ARG LYS PRO SEQRES 19 A 679 VAL ASP GLU TYR LYS ASP CYS HIS LEU ALA GLN VAL PRO SEQRES 20 A 679 SER HIS THR VAL VAL ALA ARG SER MET GLY GLY LYS GLU SEQRES 21 A 679 ASP LEU ILE TRP GLU LEU LEU ASN GLN ALA GLN GLU HIS SEQRES 22 A 679 PHE GLY LYS ASP LYS SER LYS GLU PHE GLN LEU PHE SER SEQRES 23 A 679 SER PRO HIS GLY LYS ASP LEU LEU PHE LYS ASP SER ALA SEQRES 24 A 679 HIS GLY PHE LEU LYS VAL PRO PRO ARG MET ASP ALA LYS SEQRES 25 A 679 MET TYR LEU GLY TYR GLU TYR VAL THR ALA ILE ARG ASN SEQRES 26 A 679 LEU ARG GLU GLY THR CYS PRO GLU ALA PRO THR ASP GLU SEQRES 27 A 679 CYS LYS PRO VAL LYS TRP CYS ALA LEU SER HIS HIS GLU SEQRES 28 A 679 ARG LEU LYS CYS ASP GLU TRP SER VAL ASN SER VAL GLY SEQRES 29 A 679 LYS ILE GLU CYS VAL SER ALA GLU THR THR GLU ASP CYS SEQRES 30 A 679 ILE ALA LYS ILE MET ASN GLY GLU ALA ASP ALA MET SER SEQRES 31 A 679 LEU ASP GLY GLY PHE VAL TYR ILE ALA GLY LYS CYS GLY SEQRES 32 A 679 LEU VAL PRO VAL LEU ALA GLU ASN TYR ASN LYS SER ASP SEQRES 33 A 679 ASN CYS GLU ASP THR PRO GLU ALA GLY TYR PHE ALA ILE SEQRES 34 A 679 ALA VAL VAL LYS LYS SER ALA SER ASP LEU THR TRP ASP SEQRES 35 A 679 ASN LEU LYS GLY LYS LYS SER CYS HIS THR ALA VAL GLY SEQRES 36 A 679 ARG THR ALA GLY TRP ASN ILE PRO MET GLY LEU LEU TYR SEQRES 37 A 679 ASN LYS ILE ASN HIS CYS ARG PHE ASP GLU PHE PHE SER SEQRES 38 A 679 GLU GLY CYS ALA PRO GLY SER LYS LYS ASP SER SER LEU SEQRES 39 A 679 CYS LYS LEU CYS MET GLY SER GLY LEU ASN LEU CYS GLU SEQRES 40 A 679 PRO ASN ASN LYS GLU GLY TYR TYR GLY TYR THR GLY ALA SEQRES 41 A 679 PHE ARG CYS LEU VAL GLU LYS GLY ASP VAL ALA PHE VAL SEQRES 42 A 679 LYS HIS GLN THR VAL PRO GLN ASN THR GLY GLY LYS ASN SEQRES 43 A 679 PRO ASP PRO TRP ALA LYS ASN LEU ASN GLU LYS ASP TYR SEQRES 44 A 679 GLU LEU LEU CYS LEU ASP GLY THR ARG LYS PRO VAL GLU SEQRES 45 A 679 GLU TYR ALA ASN CYS HIS LEU ALA ARG ALA PRO ASN HIS SEQRES 46 A 679 ALA VAL VAL THR ARG LYS ASP LYS GLU ALA CYS VAL HIS SEQRES 47 A 679 LYS ILE LEU ARG GLN GLN GLN HIS LEU PHE GLY SER ASN SEQRES 48 A 679 VAL THR ASP CYS SER GLY ASN PHE CYS LEU PHE ARG SER SEQRES 49 A 679 GLU THR LYS ASP LEU LEU PHE ARG ASP ASP THR VAL CYS SEQRES 50 A 679 LEU ALA LYS LEU HIS ASP ARG ASN THR TYR GLU LYS TYR SEQRES 51 A 679 LEU GLY GLU GLU TYR VAL LYS ALA VAL GLY ASN LEU ARG SEQRES 52 A 679 LYS CYS SER THR SER SER LEU LEU GLU ALA CYS THR PHE SEQRES 53 A 679 ARG ARG PRO MODRES 4H0W ASN A 413 ASN GLYCOSYLATION SITE HET FE A 701 1 HET CO3 A 702 4 HET BS3 A 703 1 HET CO3 A 704 4 HET NAG A 705 14 HET NTA A 706 13 HETNAM FE FE (III) ION HETNAM CO3 CARBONATE ION HETNAM BS3 BISMUTH(III) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NTA NITRILOTRIACETIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 FE FE 3+ FORMUL 3 CO3 2(C O3 2-) FORMUL 4 BS3 BI 3+ FORMUL 6 NAG C8 H15 N O6 FORMUL 7 NTA C6 H9 N O6 FORMUL 8 HOH *130(H2 O) HELIX 1 1 SER A 12 ILE A 30 1 19 HELIX 2 2 SER A 44 ALA A 54 1 11 HELIX 3 3 ASP A 63 LEU A 72 1 10 HELIX 4 4 GLN A 108 LEU A 112 5 5 HELIX 5 5 TRP A 128 TYR A 136 1 9 HELIX 6 6 CYS A 137 LEU A 139 5 3 HELIX 7 7 PRO A 145 PHE A 154 1 10 HELIX 8 8 PHE A 167 GLN A 172 5 6 HELIX 9 9 PHE A 186 ASP A 197 1 12 HELIX 10 10 HIS A 207 LEU A 214 1 8 HELIX 11 11 ASN A 216 ASP A 221 1 6 HELIX 12 12 PRO A 234 CYS A 241 5 8 HELIX 13 13 LYS A 259 GLY A 275 1 17 HELIX 14 14 ASP A 310 GLY A 316 1 7 HELIX 15 15 GLY A 316 GLY A 329 1 14 HELIX 16 16 SER A 348 SER A 362 1 15 HELIX 17 17 THR A 373 ASN A 383 1 11 HELIX 18 18 ASP A 392 CYS A 402 1 11 HELIX 19 19 TRP A 460 ASN A 472 1 13 HELIX 20 20 ARG A 475 PHE A 480 1 6 HELIX 21 21 SER A 492 LYS A 496 5 5 HELIX 22 22 SER A 501 LEU A 505 5 5 HELIX 23 23 TYR A 515 LYS A 527 1 13 HELIX 24 24 GLN A 536 THR A 542 1 7 HELIX 25 25 ASN A 555 LYS A 557 5 3 HELIX 26 26 GLU A 572 CYS A 577 5 6 HELIX 27 27 LYS A 593 GLY A 609 1 17 HELIX 28 28 THR A 646 GLY A 652 1 7 HELIX 29 29 GLY A 652 ASN A 661 1 10 HELIX 30 30 SER A 668 ARG A 678 1 11 SHEET 1 A 2 THR A 5 ALA A 10 0 SHEET 2 A 2 SER A 36 LYS A 41 1 O ALA A 38 N TRP A 8 SHEET 1 B 4 VAL A 60 LEU A 62 0 SHEET 2 B 4 THR A 250 ARG A 254 -1 O THR A 250 N LEU A 62 SHEET 3 B 4 LEU A 77 PHE A 84 -1 N VAL A 81 O VAL A 251 SHEET 4 B 4 GLY A 301 LYS A 304 -1 O LEU A 303 N ALA A 82 SHEET 1 C 6 GLY A 156 CYS A 158 0 SHEET 2 C 6 LYS A 116 CYS A 118 1 N SER A 117 O GLY A 156 SHEET 3 C 6 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 C 6 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 C 6 TYR A 223 LEU A 226 -1 O GLU A 224 N VAL A 101 SHEET 6 C 6 ARG A 232 LYS A 233 -1 O LYS A 233 N LEU A 225 SHEET 1 D 5 GLY A 156 CYS A 158 0 SHEET 2 D 5 LYS A 116 CYS A 118 1 N SER A 117 O GLY A 156 SHEET 3 D 5 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 D 5 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 D 5 ALA A 244 PRO A 247 -1 O VAL A 246 N TYR A 95 SHEET 1 E 2 VAL A 342 LEU A 347 0 SHEET 2 E 2 ILE A 366 ALA A 371 1 O VAL A 369 N ALA A 346 SHEET 1 F 4 ALA A 388 LEU A 391 0 SHEET 2 F 4 ALA A 586 THR A 589 -1 O ALA A 586 N LEU A 391 SHEET 3 F 4 VAL A 405 ASN A 411 -1 N LEU A 408 O VAL A 587 SHEET 4 F 4 CYS A 637 LYS A 640 -1 O ALA A 639 N ALA A 409 SHEET 1 G 6 GLU A 482 CYS A 484 0 SHEET 2 G 6 LYS A 448 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 G 6 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 G 6 TYR A 426 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 G 6 TYR A 559 LEU A 562 -1 O LEU A 562 N ALA A 430 SHEET 6 G 6 ARG A 568 PRO A 570 -1 O LYS A 569 N LEU A 561 SHEET 1 H 5 GLU A 482 CYS A 484 0 SHEET 2 H 5 LYS A 448 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 H 5 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 H 5 TYR A 426 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 H 5 ALA A 580 ALA A 582 -1 O ALA A 580 N ALA A 428 SSBOND 1 CYS A 9 CYS A 48 1555 1555 2.05 SSBOND 2 CYS A 19 CYS A 39 1555 1555 2.05 SSBOND 3 CYS A 118 CYS A 194 1555 1555 2.05 SSBOND 4 CYS A 137 CYS A 331 1555 1555 2.05 SSBOND 5 CYS A 158 CYS A 174 1555 1555 2.04 SSBOND 6 CYS A 161 CYS A 179 1555 1555 2.04 SSBOND 7 CYS A 171 CYS A 177 1555 1555 2.03 SSBOND 8 CYS A 227 CYS A 241 1555 1555 2.04 SSBOND 9 CYS A 339 CYS A 596 1555 1555 2.04 SSBOND 10 CYS A 345 CYS A 377 1555 1555 2.04 SSBOND 11 CYS A 355 CYS A 368 1555 1555 2.05 SSBOND 12 CYS A 402 CYS A 674 1555 1555 2.05 SSBOND 13 CYS A 418 CYS A 637 1555 1555 2.05 SSBOND 14 CYS A 450 CYS A 523 1555 1555 2.06 SSBOND 15 CYS A 474 CYS A 665 1555 1555 2.04 SSBOND 16 CYS A 484 CYS A 498 1555 1555 2.04 SSBOND 17 CYS A 495 CYS A 506 1555 1555 2.07 SSBOND 18 CYS A 563 CYS A 577 1555 1555 2.04 SSBOND 19 CYS A 615 CYS A 620 1555 1555 2.04 LINK ND2 ASN A 413 C1 NAG A 705 1555 1555 1.45 LINK OH TYR A 188 BI BS3 A 703 1555 1555 2.36 LINK OD1 ASP A 392 FE FE A 701 1555 1555 2.11 LINK OH TYR A 426 FE FE A 701 1555 1555 2.01 LINK OH TYR A 517 FE FE A 701 1555 1555 1.97 LINK NE2 HIS A 585 FE FE A 701 1555 1555 2.30 LINK FE FE A 701 O3 CO3 A 702 1555 1555 2.04 LINK FE FE A 701 O2 CO3 A 702 1555 1555 2.34 LINK BI BS3 A 703 O2 CO3 A 704 1555 1555 2.89 LINK BI BS3 A 703 O3 CO3 A 704 1555 1555 2.61 LINK BI BS3 A 703 OXT NTA A 706 1555 1555 2.37 LINK BI BS3 A 703 O8 NTA A 706 1555 1555 3.11 LINK BI BS3 A 703 O13 NTA A 706 1555 1555 2.41 LINK BI BS3 A 703 O HOH A 901 1555 1555 2.62 CISPEP 1 ALA A 73 PRO A 74 0 0.83 CISPEP 2 GLU A 141 PRO A 142 0 -4.23 CISPEP 3 LYS A 144 PRO A 145 0 2.81 CISPEP 4 ALA A 334 PRO A 335 0 0.64 CISPEP 5 PRO A 335 THR A 336 0 9.43 CISPEP 6 THR A 336 ASP A 337 0 1.30 CISPEP 7 SER A 624 GLU A 625 0 0.39 CRYST1 73.907 90.165 111.032 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009006 0.00000