HEADER TRANSPORT PROTEIN/NUCLEAR PROTEIN 10-SEP-12 4H1K OBSLTE 03-APR-13 4H1K 4JLQ TITLE CRYSTAL STRUCTURE OF HUMAN KAP-BETA2 BOUND TO THE NLS OF SACCHAROMYCES TITLE 2 CEREVISIAE NAB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMPORTIN BETA-2, KARYOPHERIN BETA-2, M9 REGION INTERACTION COMPND 5 PROTEIN, MIP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RNA-BINDING RGG-BOX RESIDUES 205-242; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KPNB2, MIP1, TNPO1, TNPO1 OR KPNB2, TRN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUSRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: NAB2, YGL122C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUSRIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV KEYWDS HEAT REPEATS, NUCLEAR IMPORT, PROTEIN TRANSPORT, IMPORTIN, KEYWDS 2 TRANSPORTIN, TRANSPORT PROTEIN, STRUCTURAL GENOMICS, NYSGRC, KEYWDS 3 NUCLEOCYTOPLASMIC TRANSPORT: A TARGET FOR CELLULAR CONTROL, KEYWDS 4 NPCXSTALS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH KEYWDS 5 CONSORTIUM, TRANSPORT PROTEIN-NUCLEAR PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,M.SONIAT,A.GIZZI,G.COLLETT,N.BANU,R.BHOSLE,S.CHAMALA, AUTHOR 2 S.CHOWDHURY,A.FISER,A.S.GLENN,J.HAMMONDS,B.HILLERICH,K.KHAFIZOV, AUTHOR 3 J.D.LOVE,B.MATIKAINEN,R.SEIDEL,R.TORO,P.R.KUMAR,J.BONANNO,M.P.ROUT, AUTHOR 4 Y.M.CHOOK,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 5 (NYSGRC),NUCLEOCYTOPLASMIC TRANSPORT: A TARGET FOR CELLULAR CONTROL AUTHOR 6 (NPCXSTALS) REVDAT 3 03-APR-13 4H1K 1 OBSLTE REVDAT 2 09-JAN-13 4H1K 1 AUTHOR KEYWDS REVDAT 1 02-JAN-13 4H1K 0 JRNL AUTH P.SAMPATHKUMAR,A.GIZZI,B.HILLERICH,R.SEIDEL,J.BONANNO, JRNL AUTH 2 M.P.ROUT,Y.M.CHOOK,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HUMAN KAP-BETA2 BOUND TO THE NLS OF JRNL TITL 2 SACCHAROMYCES CEREVISIAE NAB2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.77000 REMARK 3 B22 (A**2) : 2.87000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.958 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.807 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6877 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6683 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9344 ; 1.536 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15401 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 844 ; 6.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;41.310 ;25.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1224 ;16.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;23.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7706 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30936 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB CODES: 2QMR AND 4FDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.3, 110 MM REMARK 280 POTASSIUM ACETATE, 2MM MAGNESIUM ACETATE, 15% GLYCEROL, 2MM DTT; REMARK 280 RESERVOIR (MCSG2 #4: 0.1 M SODIUM ACETATE:ACETIC ACID PH 4.5, 0.8 REMARK 280 M NAH2PO4/1.2 M K2HPO4), CRYOPROTECTION (33% MPD), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.19150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.19150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 ASP A 359 REMARK 465 VAL A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 GLY A 366 REMARK 465 ASP A 367 REMARK 465 ARG B 205 REMARK 465 PHE B 206 REMARK 465 THR B 207 REMARK 465 GLN B 208 REMARK 465 ARG B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 ALA B 213 REMARK 465 VAL B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 465 ASN B 217 REMARK 465 ARG B 218 REMARK 465 ARG B 219 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 ARG B 222 REMARK 465 GLY B 223 REMARK 465 GLY B 224 REMARK 465 ASN B 225 REMARK 465 ARG B 226 REMARK 465 GLY B 227 REMARK 465 GLY B 228 REMARK 465 ARG B 229 REMARK 465 ASN B 230 REMARK 465 ASN B 231 REMARK 465 ASN B 232 REMARK 465 SER B 233 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 581 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 44 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 107.57 -57.62 REMARK 500 GLN A 42 -34.47 -34.92 REMARK 500 ASP A 61 124.54 -28.13 REMARK 500 HIS A 79 36.82 70.47 REMARK 500 GLU A 122 178.37 -54.06 REMARK 500 VAL A 167 -36.31 -34.92 REMARK 500 ASP A 169 71.74 58.01 REMARK 500 ARG A 170 66.68 30.81 REMARK 500 LEU A 243 -35.95 -33.64 REMARK 500 ARG A 246 64.59 -119.53 REMARK 500 ARG A 295 -34.86 -39.65 REMARK 500 ARG A 391 -128.33 44.23 REMARK 500 GLU A 393 -11.61 -45.71 REMARK 500 HIS A 408 152.04 -41.62 REMARK 500 CYS A 512 -127.54 45.66 REMARK 500 HIS A 535 -118.19 60.68 REMARK 500 HIS A 554 -36.54 -37.04 REMARK 500 GLU A 579 25.56 80.87 REMARK 500 GLN A 598 -123.90 60.06 REMARK 500 PRO A 603 -31.28 -33.85 REMARK 500 CYS A 698 72.86 -157.56 REMARK 500 ASP A 806 106.37 -47.08 REMARK 500 PRO A 825 1.91 -62.65 REMARK 500 LYS A 846 150.69 -48.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FDD RELATED DB: PDB REMARK 900 RELATED ID: NYSGRC-020458 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: NYSGRC-020441 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT RESIDUES 337 TO 367 WERE REPLACED WITH GGSGG DBREF 4H1K A 1 361 UNP Q92973 TNPO1_HUMAN 9 331 DBREF 4H1K A 367 890 UNP Q92973 TNPO1_HUMAN 375 898 DBREF 4H1K B 205 242 UNP P32505 NAB2_YEAST 205 242 SEQADV 4H1K GLY A 362 UNP Q92973 SEE REMARK 999 SEQADV 4H1K GLY A 363 UNP Q92973 SEE REMARK 999 SEQADV 4H1K SER A 364 UNP Q92973 SEE REMARK 999 SEQADV 4H1K GLY A 365 UNP Q92973 SEE REMARK 999 SEQADV 4H1K GLY A 366 UNP Q92973 SEE REMARK 999 SEQRES 1 A 852 MET GLU TYR GLU TRP LYS PRO ASP GLU GLN GLY LEU GLN SEQRES 2 A 852 GLN ILE LEU GLN LEU LEU LYS GLU SER GLN SER PRO ASP SEQRES 3 A 852 THR THR ILE GLN ARG THR VAL GLN GLN LYS LEU GLU GLN SEQRES 4 A 852 LEU ASN GLN TYR PRO ASP PHE ASN ASN TYR LEU ILE PHE SEQRES 5 A 852 VAL LEU THR LYS LEU LYS SER GLU ASP GLU PRO THR ARG SEQRES 6 A 852 SER LEU SER GLY LEU ILE LEU LYS ASN ASN VAL LYS ALA SEQRES 7 A 852 HIS PHE GLN ASN PHE PRO ASN GLY VAL THR ASP PHE ILE SEQRES 8 A 852 LYS SER GLU CYS LEU ASN ASN ILE GLY ASP SER SER PRO SEQRES 9 A 852 LEU ILE ARG ALA THR VAL GLY ILE LEU ILE THR THR ILE SEQRES 10 A 852 ALA SER LYS GLY GLU LEU GLN ASN TRP PRO ASP LEU LEU SEQRES 11 A 852 PRO LYS LEU CYS SER LEU LEU ASP SER GLU ASP TYR ASN SEQRES 12 A 852 THR CYS GLU GLY ALA PHE GLY ALA LEU GLN LYS ILE CYS SEQRES 13 A 852 GLU ASP SER ALA GLU ILE LEU ASP SER ASP VAL LEU ASP SEQRES 14 A 852 ARG PRO LEU ASN ILE MET ILE PRO LYS PHE LEU GLN PHE SEQRES 15 A 852 PHE LYS HIS SER SER PRO LYS ILE ARG SER HIS ALA VAL SEQRES 16 A 852 ALA CYS VAL ASN GLN PHE ILE ILE SER ARG THR GLN ALA SEQRES 17 A 852 LEU MET LEU HIS ILE ASP SER PHE ILE GLU ASN LEU PHE SEQRES 18 A 852 ALA LEU ALA GLY ASP GLU GLU PRO GLU VAL ARG LYS ASN SEQRES 19 A 852 VAL CYS ARG ALA LEU VAL MET LEU LEU GLU VAL ARG MET SEQRES 20 A 852 ASP ARG LEU LEU PRO HIS MET HIS ASN ILE VAL GLU TYR SEQRES 21 A 852 MET LEU GLN ARG THR GLN ASP GLN ASP GLU ASN VAL ALA SEQRES 22 A 852 LEU GLU ALA CYS GLU PHE TRP LEU THR LEU ALA GLU GLN SEQRES 23 A 852 PRO ILE CYS LYS ASP VAL LEU VAL ARG HIS LEU PRO LYS SEQRES 24 A 852 LEU ILE PRO VAL LEU VAL ASN GLY MET LYS TYR SER ASP SEQRES 25 A 852 ILE ASP ILE ILE LEU LEU LYS GLY ASP VAL GLU GLY GLY SEQRES 26 A 852 SER GLY GLY ASP ASP THR ILE SER ASP TRP ASN LEU ARG SEQRES 27 A 852 LYS CYS SER ALA ALA ALA LEU ASP VAL LEU ALA ASN VAL SEQRES 28 A 852 TYR ARG ASP GLU LEU LEU PRO HIS ILE LEU PRO LEU LEU SEQRES 29 A 852 LYS GLU LEU LEU PHE HIS HIS GLU TRP VAL VAL LYS GLU SEQRES 30 A 852 SER GLY ILE LEU VAL LEU GLY ALA ILE ALA GLU GLY CYS SEQRES 31 A 852 MET GLN GLY MET ILE PRO TYR LEU PRO GLU LEU ILE PRO SEQRES 32 A 852 HIS LEU ILE GLN CYS LEU SER ASP LYS LYS ALA LEU VAL SEQRES 33 A 852 ARG SER ILE THR CYS TRP THR LEU SER ARG TYR ALA HIS SEQRES 34 A 852 TRP VAL VAL SER GLN PRO PRO ASP THR TYR LEU LYS PRO SEQRES 35 A 852 LEU MET THR GLU LEU LEU LYS ARG ILE LEU ASP SER ASN SEQRES 36 A 852 LYS ARG VAL GLN GLU ALA ALA CYS SER ALA PHE ALA THR SEQRES 37 A 852 LEU GLU GLU GLU ALA CYS THR GLU LEU VAL PRO TYR LEU SEQRES 38 A 852 ALA TYR ILE LEU ASP THR LEU VAL PHE ALA PHE SER LYS SEQRES 39 A 852 TYR GLN HIS LYS ASN LEU LEU ILE LEU TYR ASP ALA ILE SEQRES 40 A 852 GLY THR LEU ALA ASP SER VAL GLY HIS HIS LEU ASN LYS SEQRES 41 A 852 PRO GLU TYR ILE GLN MET LEU MET PRO PRO LEU ILE GLN SEQRES 42 A 852 LYS TRP ASN MET LEU LYS ASP GLU ASP LYS ASP LEU PHE SEQRES 43 A 852 PRO LEU LEU GLU CYS LEU SER SER VAL ALA THR ALA LEU SEQRES 44 A 852 GLN SER GLY PHE LEU PRO TYR CYS GLU PRO VAL TYR GLN SEQRES 45 A 852 ARG CYS VAL ASN LEU VAL GLN LYS THR LEU ALA GLN ALA SEQRES 46 A 852 MET LEU ASN ASN ALA GLN PRO ASP GLN TYR GLU ALA PRO SEQRES 47 A 852 ASP LYS ASP PHE MET ILE VAL ALA LEU ASP LEU LEU SER SEQRES 48 A 852 GLY LEU ALA GLU GLY LEU GLY GLY ASN ILE GLU GLN LEU SEQRES 49 A 852 VAL ALA ARG SER ASN ILE LEU THR LEU MET TYR GLN CYS SEQRES 50 A 852 MET GLN ASP LYS MET PRO GLU VAL ARG GLN SER SER PHE SEQRES 51 A 852 ALA LEU LEU GLY ASP LEU THR LYS ALA CYS PHE GLN HIS SEQRES 52 A 852 VAL LYS PRO CYS ILE ALA ASP PHE MET PRO ILE LEU GLY SEQRES 53 A 852 THR ASN LEU ASN PRO GLU PHE ILE SER VAL CYS ASN ASN SEQRES 54 A 852 ALA THR TRP ALA ILE GLY GLU ILE SER ILE GLN MET GLY SEQRES 55 A 852 ILE GLU MET GLN PRO TYR ILE PRO MET VAL LEU HIS GLN SEQRES 56 A 852 LEU VAL GLU ILE ILE ASN ARG PRO ASN THR PRO LYS THR SEQRES 57 A 852 LEU LEU GLU ASN THR ALA ILE THR ILE GLY ARG LEU GLY SEQRES 58 A 852 TYR VAL CYS PRO GLN GLU VAL ALA PRO MET LEU GLN GLN SEQRES 59 A 852 PHE ILE ARG PRO TRP CYS THR SER LEU ARG ASN ILE ARG SEQRES 60 A 852 ASP ASN GLU GLU LYS ASP SER ALA PHE ARG GLY ILE CYS SEQRES 61 A 852 THR MET ILE SER VAL ASN PRO SER GLY VAL ILE GLN ASP SEQRES 62 A 852 PHE ILE PHE PHE CYS ASP ALA VAL ALA SER TRP ILE ASN SEQRES 63 A 852 PRO LYS ASP ASP LEU ARG ASP MET PHE CYS LYS ILE LEU SEQRES 64 A 852 HIS GLY PHE LYS ASN GLN VAL GLY ASP GLU ASN TRP ARG SEQRES 65 A 852 ARG PHE SER ASP GLN PHE PRO LEU PRO LEU LYS GLU ARG SEQRES 66 A 852 LEU ALA ALA PHE TYR GLY VAL SEQRES 1 B 38 ARG PHE THR GLN ARG GLY GLY GLY ALA VAL GLY LYS ASN SEQRES 2 B 38 ARG ARG GLY GLY ARG GLY GLY ASN ARG GLY GLY ARG ASN SEQRES 3 B 38 ASN ASN SER THR ARG PHE ASN PRO LEU ALA LYS ALA HELIX 1 1 ASP A 8 GLN A 23 1 16 HELIX 2 2 ASP A 26 GLN A 42 1 17 HELIX 3 3 ASP A 45 LYS A 56 1 12 HELIX 4 4 ASP A 61 ALA A 78 1 18 HELIX 5 5 PRO A 84 ASN A 98 1 15 HELIX 6 6 SER A 103 GLY A 121 1 19 HELIX 7 7 ASP A 128 ASP A 138 1 11 HELIX 8 8 ASP A 141 ASP A 164 1 24 HELIX 9 9 SER A 165 ASP A 169 5 5 HELIX 10 10 PRO A 171 PHE A 182 1 12 HELIX 11 11 PHE A 183 HIS A 185 5 3 HELIX 12 12 SER A 187 GLN A 200 1 14 HELIX 13 13 THR A 206 LEU A 211 1 6 HELIX 14 14 HIS A 212 ALA A 222 1 11 HELIX 15 15 GLU A 228 ARG A 246 1 19 HELIX 16 16 ARG A 246 LEU A 251 1 6 HELIX 17 17 HIS A 253 THR A 265 1 13 HELIX 18 18 ASP A 269 ALA A 284 1 16 HELIX 19 19 ILE A 288 VAL A 294 1 7 HELIX 20 20 HIS A 296 MET A 308 1 13 HELIX 21 21 SER A 311 LEU A 318 1 8 HELIX 22 22 ASN A 374 TYR A 390 1 17 HELIX 23 23 ARG A 391 GLU A 393 5 3 HELIX 24 24 LEU A 394 HIS A 408 1 15 HELIX 25 25 GLU A 410 ALA A 425 1 16 HELIX 26 26 CYS A 428 ILE A 433 1 6 HELIX 27 27 TYR A 435 LEU A 447 1 13 HELIX 28 28 LYS A 451 TYR A 465 1 15 HELIX 29 29 TYR A 465 SER A 471 1 7 HELIX 30 30 TYR A 477 ILE A 489 1 13 HELIX 31 31 ASN A 493 CYS A 512 1 20 HELIX 32 32 THR A 513 PRO A 517 5 5 HELIX 33 33 TYR A 518 TYR A 533 1 16 HELIX 34 34 HIS A 535 GLY A 553 1 19 HELIX 35 35 HIS A 554 ASN A 557 5 4 HELIX 36 36 LYS A 558 LEU A 576 1 19 HELIX 37 37 ASP A 582 GLN A 598 1 17 HELIX 38 38 SER A 599 TYR A 604 5 6 HELIX 39 39 CYS A 605 GLN A 629 1 25 HELIX 40 40 ASP A 637 LEU A 655 1 19 HELIX 41 41 GLY A 656 ASN A 658 5 3 HELIX 42 42 ILE A 659 ARG A 665 1 7 HELIX 43 43 ASN A 667 MET A 676 1 10 HELIX 44 44 MET A 680 PHE A 699 1 20 HELIX 45 45 GLN A 700 PRO A 704 5 5 HELIX 46 46 CYS A 705 ASN A 716 1 12 HELIX 47 47 PHE A 721 GLY A 740 1 20 HELIX 48 48 ILE A 741 GLN A 744 5 4 HELIX 49 49 TYR A 746 MET A 749 5 4 HELIX 50 50 VAL A 750 ARG A 760 1 11 HELIX 51 51 PRO A 764 CYS A 782 1 19 HELIX 52 52 CYS A 782 ALA A 787 1 6 HELIX 53 53 MET A 789 ARG A 802 1 14 HELIX 54 54 ASN A 807 ASN A 824 1 18 HELIX 55 55 SER A 826 ASP A 831 1 6 HELIX 56 56 ASP A 831 ALA A 840 1 10 HELIX 57 57 LYS A 846 ASP A 874 1 29 HELIX 58 58 PRO A 877 TYR A 888 1 12 CRYST1 132.234 172.383 68.443 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014611 0.00000