HEADER OXIDOREDUCTASE 12-SEP-12 4H28 OBSLTE 02-APR-14 4H28 4JY3 TITLE CRYSTAL STRUCTURE OF MHPCO, 5-PYRIDOXIC ACID (5PA) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.12.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LOTI; SOURCE 3 ORGANISM_COMMON: MESORHIZOBIUM LOTI; SOURCE 4 ORGANISM_TAXID: 266835; SOURCE 5 STRAIN: MAFF303099; SOURCE 6 GENE: MLR6788; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A KEYWDS FAD-BINDING MOTIF, OXYGENASE, FAD, 3-HYDROXYPYRIDINE-5-CARBOXYLIC KEYWDS 2 ACID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOBAYASHI,H.YOSHIDA,B.MIKAMI,H.HAYASHI,S.KAMITORI,T.YAGI REVDAT 2 02-APR-14 4H28 1 OBSLTE REVDAT 1 18-SEP-13 4H28 0 JRNL AUTH J.KOBAYASHI,H.YOSHIDA,B.MIKAMI,H.HAYASHI,S.KAMITORI,T.YAGI JRNL TITL CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC JRNL TITL 2 ACID OXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 103424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9900 - 5.4941 1.00 3362 174 0.2013 0.2330 REMARK 3 2 5.4941 - 4.3628 1.00 3311 172 0.1403 0.1448 REMARK 3 3 4.3628 - 3.8119 1.00 3313 158 0.1450 0.1466 REMARK 3 4 3.8119 - 3.4637 1.00 3308 175 0.1514 0.1797 REMARK 3 5 3.4637 - 3.2155 1.00 3283 174 0.1616 0.1721 REMARK 3 6 3.2155 - 3.0260 1.00 3283 169 0.1599 0.1736 REMARK 3 7 3.0260 - 2.8746 1.00 3307 174 0.1614 0.1930 REMARK 3 8 2.8746 - 2.7495 1.00 3281 177 0.1560 0.1707 REMARK 3 9 2.7495 - 2.6436 1.00 3316 166 0.1548 0.1788 REMARK 3 10 2.6436 - 2.5524 1.00 3265 170 0.1543 0.1986 REMARK 3 11 2.5524 - 2.4726 1.00 3309 175 0.1557 0.2021 REMARK 3 12 2.4726 - 2.4020 1.00 3269 180 0.1541 0.1923 REMARK 3 13 2.4020 - 2.3388 1.00 3314 174 0.1498 0.1466 REMARK 3 14 2.3388 - 2.2817 1.00 3230 186 0.1544 0.1718 REMARK 3 15 2.2817 - 2.2298 1.00 3279 179 0.1618 0.1809 REMARK 3 16 2.2298 - 2.1824 1.00 3263 171 0.1545 0.2084 REMARK 3 17 2.1824 - 2.1387 1.00 3262 182 0.1519 0.1728 REMARK 3 18 2.1387 - 2.0984 1.00 3304 169 0.1598 0.1872 REMARK 3 19 2.0984 - 2.0609 1.00 3293 161 0.1582 0.2084 REMARK 3 20 2.0609 - 2.0260 1.00 3244 181 0.1608 0.1761 REMARK 3 21 2.0260 - 1.9933 1.00 3256 181 0.1540 0.1993 REMARK 3 22 1.9933 - 1.9626 1.00 3309 159 0.1619 0.1951 REMARK 3 23 1.9626 - 1.9338 1.00 3281 174 0.1622 0.1718 REMARK 3 24 1.9338 - 1.9065 1.00 3275 175 0.1668 0.2081 REMARK 3 25 1.9065 - 1.8808 1.00 3285 178 0.1883 0.2267 REMARK 3 26 1.8808 - 1.8563 1.00 3219 167 0.1943 0.2526 REMARK 3 27 1.8563 - 1.8331 1.00 3381 171 0.2026 0.2355 REMARK 3 28 1.8331 - 1.8111 1.00 3225 157 0.2162 0.2447 REMARK 3 29 1.8111 - 1.7900 0.99 3254 183 0.2222 0.2548 REMARK 3 30 1.7900 - 1.7699 0.91 2970 161 0.2314 0.2685 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 36.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.15960 REMARK 3 B22 (A**2) : -2.47610 REMARK 3 B33 (A**2) : -4.68350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.29170 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6200 REMARK 3 ANGLE : 1.406 8434 REMARK 3 CHIRALITY : 0.084 903 REMARK 3 PLANARITY : 0.005 1071 REMARK 3 DIHEDRAL : 14.040 2279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB074926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3GMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG8000, 0.1M TRIS-HCL, 1MM 5- REMARK 280 PYRIDOXIC ACID, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.72300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.76300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.72300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.76300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -63.05938 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -75.36991 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 586 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 662 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 795 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 921 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 688 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 765 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 294 S2 BME B 402 1.97 REMARK 500 SG CYS A 294 S2 BME A 402 1.97 REMARK 500 OE2 GLU A 41 O3B FAD A 401 2.14 REMARK 500 OE1 GLU B 41 O3B FAD B 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -75.95 68.84 REMARK 500 GLU A 195 68.03 -115.97 REMARK 500 ASN A 218 -172.28 179.41 REMARK 500 HIS A 291 36.69 -149.63 REMARK 500 SER A 376 -168.53 -120.93 REMARK 500 TRP A 377 64.62 39.92 REMARK 500 ALA B 51 -76.46 68.94 REMARK 500 GLU B 195 70.02 -117.31 REMARK 500 ASN B 218 -171.85 178.35 REMARK 500 HIS B 291 36.40 -151.62 REMARK 500 SER B 376 -169.66 -120.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 827 DISTANCE = 5.30 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5PR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5PR B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ALH RELATED DB: PDB REMARK 900 MHPCO, UNLIGANDED FORM REMARK 900 RELATED ID: 4H2N RELATED DB: PDB REMARK 900 RELATED ID: 4H2P RELATED DB: PDB REMARK 900 RELATED ID: 4H2Q RELATED DB: PDB REMARK 900 RELATED ID: 4H2R RELATED DB: PDB DBREF 4H28 A 1 379 UNP Q988D3 Q988D3_RHILO 1 379 DBREF 4H28 B 1 379 UNP Q988D3 Q988D3_RHILO 1 379 SEQRES 1 A 379 MET ALA ASN VAL ASN LYS THR PRO GLY LYS THR ARG ARG SEQRES 2 A 379 ALA GLU VAL ALA GLY GLY GLY PHE ALA GLY LEU THR ALA SEQRES 3 A 379 ALA ILE ALA LEU LYS GLN ASN GLY TRP ASP VAL ARG LEU SEQRES 4 A 379 HIS GLU LYS SER SER GLU LEU ARG ALA PHE GLY ALA GLY SEQRES 5 A 379 ILE TYR LEU TRP HIS ASN GLY LEU ARG VAL LEU GLU GLY SEQRES 6 A 379 LEU GLY ALA LEU ASP ASP VAL LEU GLN GLY SER HIS THR SEQRES 7 A 379 PRO PRO THR TYR GLU THR TRP MET HIS ASN LYS SER VAL SEQRES 8 A 379 SER LYS GLU THR PHE ASN GLY LEU PRO TRP ARG ILE MET SEQRES 9 A 379 THR ARG SER HIS LEU HIS ASP ALA LEU VAL ASN ARG ALA SEQRES 10 A 379 ARG ALA LEU GLY VAL ASP ILE SER VAL ASN SER GLU ALA SEQRES 11 A 379 VAL ALA ALA ASP PRO VAL GLY ARG LEU THR LEU GLN THR SEQRES 12 A 379 GLY GLU VAL LEU GLU ALA ASP LEU ILE VAL GLY ALA ASP SEQRES 13 A 379 GLY VAL GLY SER LYS VAL ARG ASP SER ILE GLY PHE LYS SEQRES 14 A 379 GLN ASP ARG TRP VAL SER LYS ASP GLY LEU ILE ARG LEU SEQRES 15 A 379 ILE VAL PRO ARG MET LYS LYS GLU LEU GLY HIS GLY GLU SEQRES 16 A 379 TRP ASP ASN THR ILE ASP MET TRP ASN PHE TRP PRO ARG SEQRES 17 A 379 VAL GLN ARG ILE LEU TYR SER PRO CYS ASN GLU ASN GLU SEQRES 18 A 379 LEU TYR LEU GLY LEU MET ALA PRO ALA ALA ASP PRO ARG SEQRES 19 A 379 GLY SER SER VAL PRO ILE ASP LEU GLU VAL TRP VAL GLU SEQRES 20 A 379 MET PHE PRO PHE LEU GLU PRO CYS LEU ILE GLU ALA ALA SEQRES 21 A 379 LYS LEU LYS THR ALA ARG TYR ASP LYS TYR GLU THR THR SEQRES 22 A 379 LYS LEU ASP SER TRP THR ARG GLY LYS VAL ALA LEU VAL SEQRES 23 A 379 GLY ASP ALA ALA HIS ALA MET CYS PRO ALA LEU ALA GLN SEQRES 24 A 379 GLY ALA GLY CYS ALA MET VAL ASN ALA PHE SER LEU SER SEQRES 25 A 379 GLN ASP LEU GLU GLU GLY SER SER VAL GLU ASP ALA LEU SEQRES 26 A 379 VAL ALA TRP GLU THR ARG ILE ARG PRO ILE THR ASP ARG SEQRES 27 A 379 CYS GLN ALA LEU SER GLY ASP TYR ALA ALA ASN ARG SER SEQRES 28 A 379 LEU SER LYS GLY ASN MET PHE THR PRO ALA ALA LEU GLU SEQRES 29 A 379 ALA ALA ARG TYR ASP PRO LEU ARG ARG VAL TYR SER TRP SEQRES 30 A 379 PRO GLN SEQRES 1 B 379 MET ALA ASN VAL ASN LYS THR PRO GLY LYS THR ARG ARG SEQRES 2 B 379 ALA GLU VAL ALA GLY GLY GLY PHE ALA GLY LEU THR ALA SEQRES 3 B 379 ALA ILE ALA LEU LYS GLN ASN GLY TRP ASP VAL ARG LEU SEQRES 4 B 379 HIS GLU LYS SER SER GLU LEU ARG ALA PHE GLY ALA GLY SEQRES 5 B 379 ILE TYR LEU TRP HIS ASN GLY LEU ARG VAL LEU GLU GLY SEQRES 6 B 379 LEU GLY ALA LEU ASP ASP VAL LEU GLN GLY SER HIS THR SEQRES 7 B 379 PRO PRO THR TYR GLU THR TRP MET HIS ASN LYS SER VAL SEQRES 8 B 379 SER LYS GLU THR PHE ASN GLY LEU PRO TRP ARG ILE MET SEQRES 9 B 379 THR ARG SER HIS LEU HIS ASP ALA LEU VAL ASN ARG ALA SEQRES 10 B 379 ARG ALA LEU GLY VAL ASP ILE SER VAL ASN SER GLU ALA SEQRES 11 B 379 VAL ALA ALA ASP PRO VAL GLY ARG LEU THR LEU GLN THR SEQRES 12 B 379 GLY GLU VAL LEU GLU ALA ASP LEU ILE VAL GLY ALA ASP SEQRES 13 B 379 GLY VAL GLY SER LYS VAL ARG ASP SER ILE GLY PHE LYS SEQRES 14 B 379 GLN ASP ARG TRP VAL SER LYS ASP GLY LEU ILE ARG LEU SEQRES 15 B 379 ILE VAL PRO ARG MET LYS LYS GLU LEU GLY HIS GLY GLU SEQRES 16 B 379 TRP ASP ASN THR ILE ASP MET TRP ASN PHE TRP PRO ARG SEQRES 17 B 379 VAL GLN ARG ILE LEU TYR SER PRO CYS ASN GLU ASN GLU SEQRES 18 B 379 LEU TYR LEU GLY LEU MET ALA PRO ALA ALA ASP PRO ARG SEQRES 19 B 379 GLY SER SER VAL PRO ILE ASP LEU GLU VAL TRP VAL GLU SEQRES 20 B 379 MET PHE PRO PHE LEU GLU PRO CYS LEU ILE GLU ALA ALA SEQRES 21 B 379 LYS LEU LYS THR ALA ARG TYR ASP LYS TYR GLU THR THR SEQRES 22 B 379 LYS LEU ASP SER TRP THR ARG GLY LYS VAL ALA LEU VAL SEQRES 23 B 379 GLY ASP ALA ALA HIS ALA MET CYS PRO ALA LEU ALA GLN SEQRES 24 B 379 GLY ALA GLY CYS ALA MET VAL ASN ALA PHE SER LEU SER SEQRES 25 B 379 GLN ASP LEU GLU GLU GLY SER SER VAL GLU ASP ALA LEU SEQRES 26 B 379 VAL ALA TRP GLU THR ARG ILE ARG PRO ILE THR ASP ARG SEQRES 27 B 379 CYS GLN ALA LEU SER GLY ASP TYR ALA ALA ASN ARG SER SEQRES 28 B 379 LEU SER LYS GLY ASN MET PHE THR PRO ALA ALA LEU GLU SEQRES 29 B 379 ALA ALA ARG TYR ASP PRO LEU ARG ARG VAL TYR SER TRP SEQRES 30 B 379 PRO GLN HET FAD A 401 53 HET BME A 402 4 HET 5PR A 403 26 HET GOL A 404 12 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET FAD B 401 53 HET BME B 402 4 HET 5PR B 403 26 HET GOL B 404 12 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET EDO B 408 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM BME BETA-MERCAPTOETHANOL HETNAM 5PR 5-HYDROXY-4-(HYDROXYMETHYL)-6-METHYLPYRIDINE-3- HETNAM 2 5PR CARBOXYLIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN 5PR 5-PYRIDOXIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 BME 2(C2 H6 O S) FORMUL 5 5PR 2(C8 H9 N O4) FORMUL 6 GOL 8(C3 H8 O3) FORMUL 17 EDO C2 H6 O2 FORMUL 18 HOH *924(H2 O) HELIX 1 1 GLY A 20 ASN A 33 1 14 HELIX 2 2 HIS A 57 LEU A 66 1 10 HELIX 3 3 ALA A 68 GLN A 74 1 7 HELIX 4 4 THR A 95 LEU A 99 5 5 HELIX 5 5 ARG A 106 LEU A 120 1 15 HELIX 6 6 SER A 160 GLY A 167 1 8 HELIX 7 7 LYS A 188 GLY A 192 5 5 HELIX 8 8 ASP A 241 PHE A 249 1 9 HELIX 9 9 LEU A 252 LYS A 261 1 10 HELIX 10 10 GLY A 287 ALA A 292 1 6 HELIX 11 11 CYS A 294 ALA A 298 5 5 HELIX 12 12 GLN A 299 LEU A 315 1 17 HELIX 13 13 SER A 320 ARG A 350 1 31 HELIX 14 14 SER A 351 GLY A 355 5 5 HELIX 15 15 LEU A 363 ARG A 367 1 5 HELIX 16 16 GLY B 20 ASN B 33 1 14 HELIX 17 17 HIS B 57 LEU B 66 1 10 HELIX 18 18 ALA B 68 GLN B 74 1 7 HELIX 19 19 THR B 95 LEU B 99 5 5 HELIX 20 20 ARG B 106 LEU B 120 1 15 HELIX 21 21 SER B 160 GLY B 167 1 8 HELIX 22 22 LYS B 188 GLY B 192 5 5 HELIX 23 23 ASP B 241 PHE B 249 1 9 HELIX 24 24 LEU B 252 ALA B 260 1 9 HELIX 25 25 GLY B 287 ALA B 292 1 6 HELIX 26 26 CYS B 294 ALA B 298 5 5 HELIX 27 27 GLN B 299 LEU B 315 1 17 HELIX 28 28 SER B 320 ARG B 350 1 31 HELIX 29 29 SER B 351 GLY B 355 5 5 HELIX 30 30 LEU B 363 ARG B 367 1 5 SHEET 1 A 6 ASP A 123 SER A 125 0 SHEET 2 A 6 ASP A 36 HIS A 40 1 N LEU A 39 O ASP A 123 SHEET 3 A 6 ARG A 13 ALA A 17 1 N ALA A 14 O ASP A 36 SHEET 4 A 6 LEU A 151 GLY A 154 1 O VAL A 153 N ALA A 17 SHEET 5 A 6 VAL A 283 LEU A 285 1 O ALA A 284 N GLY A 154 SHEET 6 A 6 THR A 279 ARG A 280 -1 N ARG A 280 O VAL A 283 SHEET 1 B 2 GLY A 52 TRP A 56 0 SHEET 2 B 2 TRP A 101 THR A 105 -1 O ARG A 102 N LEU A 55 SHEET 1 C 7 LYS A 89 GLU A 94 0 SHEET 2 C 7 TYR A 82 MET A 86 -1 N THR A 84 O VAL A 91 SHEET 3 C 7 THR A 199 TRP A 203 1 O THR A 199 N GLU A 83 SHEET 4 C 7 ARG A 211 PRO A 216 -1 O ILE A 212 N MET A 202 SHEET 5 C 7 GLU A 221 ALA A 228 -1 O MET A 227 N ARG A 211 SHEET 6 C 7 GLN A 170 PRO A 185 -1 N VAL A 184 O LEU A 222 SHEET 7 C 7 TYR A 267 LEU A 275 -1 O LYS A 274 N ASP A 171 SHEET 1 D 3 ALA A 130 ASP A 134 0 SHEET 2 D 3 ARG A 138 LEU A 141 -1 O THR A 140 N VAL A 131 SHEET 3 D 3 VAL A 146 GLU A 148 -1 O LEU A 147 N LEU A 139 SHEET 1 E 2 TYR A 368 ASP A 369 0 SHEET 2 E 2 VAL A 374 TYR A 375 -1 O VAL A 374 N ASP A 369 SHEET 1 F 6 ASP B 123 SER B 125 0 SHEET 2 F 6 ASP B 36 HIS B 40 1 N LEU B 39 O ASP B 123 SHEET 3 F 6 ARG B 13 ALA B 17 1 N ALA B 14 O ASP B 36 SHEET 4 F 6 LEU B 151 GLY B 154 1 O VAL B 153 N ALA B 17 SHEET 5 F 6 VAL B 283 LEU B 285 1 O ALA B 284 N GLY B 154 SHEET 6 F 6 THR B 279 ARG B 280 -1 N ARG B 280 O VAL B 283 SHEET 1 G 2 GLY B 52 TRP B 56 0 SHEET 2 G 2 TRP B 101 THR B 105 -1 O ARG B 102 N LEU B 55 SHEET 1 H 7 LYS B 89 GLU B 94 0 SHEET 2 H 7 TYR B 82 MET B 86 -1 N TYR B 82 O GLU B 94 SHEET 3 H 7 THR B 199 TRP B 203 1 O ASP B 201 N TRP B 85 SHEET 4 H 7 ARG B 211 PRO B 216 -1 O ILE B 212 N MET B 202 SHEET 5 H 7 GLU B 221 ALA B 228 -1 O MET B 227 N ARG B 211 SHEET 6 H 7 GLN B 170 PRO B 185 -1 N ILE B 180 O LEU B 226 SHEET 7 H 7 TYR B 267 LEU B 275 -1 O LYS B 274 N ASP B 171 SHEET 1 I 3 ALA B 130 ASP B 134 0 SHEET 2 I 3 ARG B 138 LEU B 141 -1 O ARG B 138 N ASP B 134 SHEET 3 I 3 VAL B 146 GLU B 148 -1 O LEU B 147 N LEU B 139 SHEET 1 J 2 TYR B 368 ASP B 369 0 SHEET 2 J 2 VAL B 374 TYR B 375 -1 O VAL B 374 N ASP B 369 CISPEP 1 TRP A 206 PRO A 207 0 1.93 CISPEP 2 VAL A 238 PRO A 239 0 -8.75 CISPEP 3 TRP B 206 PRO B 207 0 2.08 CISPEP 4 VAL B 238 PRO B 239 0 -6.07 SITE 1 AC1 38 GLY A 18 GLY A 19 GLY A 20 PHE A 21 SITE 2 AC1 38 ALA A 22 HIS A 40 GLU A 41 LYS A 42 SITE 3 AC1 38 ILE A 53 TYR A 54 ARG A 106 SER A 128 SITE 4 AC1 38 GLU A 129 ALA A 130 ALA A 155 ASP A 156 SITE 5 AC1 38 GLY A 157 LEU A 179 ARG A 181 GLY A 287 SITE 6 AC1 38 ASP A 288 ALA A 298 GLY A 300 ALA A 301 SITE 7 AC1 38 GLY A 302 5PR A 403 HOH A 501 HOH A 502 SITE 8 AC1 38 HOH A 503 HOH A 504 HOH A 542 HOH A 584 SITE 9 AC1 38 HOH A 660 HOH A 687 HOH A 701 HOH A 734 SITE 10 AC1 38 HOH A 786 HOH A 820 SITE 1 AC2 4 TRP A 173 TYR A 270 CYS A 294 ALA A 347 SITE 1 AC3 16 TYR A 54 LEU A 179 ARG A 211 LEU A 213 SITE 2 AC3 16 TYR A 223 TYR A 270 PRO A 295 ALA A 296 SITE 3 AC3 16 ALA A 298 LEU A 352 FAD A 401 HOH A 606 SITE 4 AC3 16 HOH A 608 HOH A 628 HOH A 631 HOH A 701 SITE 1 AC4 11 LEU A 73 GLN A 74 GLY A 75 SER A 76 SITE 2 AC4 11 ASN A 97 ARG A 102 PRO A 378 HOH A 561 SITE 3 AC4 11 HOH A 566 HOH A 719 HOH A 898 SITE 1 AC5 7 THR A 95 PHE A 96 ASN A 97 HOH A 520 SITE 2 AC5 7 HOH A 581 HOH A 704 HOH A 711 SITE 1 AC6 6 LYS A 42 ASN A 127 GLU A 129 GLN A 142 SITE 2 AC6 6 THR A 143 HOH A 558 SITE 1 AC7 3 GLU A 364 ARG A 367 TYR A 375 SITE 1 AC8 37 GLY B 18 GLY B 19 GLY B 20 PHE B 21 SITE 2 AC8 37 ALA B 22 HIS B 40 GLU B 41 LYS B 42 SITE 3 AC8 37 ILE B 53 TYR B 54 ARG B 106 SER B 128 SITE 4 AC8 37 GLU B 129 ALA B 130 ALA B 155 ASP B 156 SITE 5 AC8 37 GLY B 157 LEU B 179 ARG B 181 GLY B 287 SITE 6 AC8 37 ASP B 288 ALA B 298 GLY B 300 ALA B 301 SITE 7 AC8 37 GLY B 302 5PR B 403 HOH B 502 HOH B 503 SITE 8 AC8 37 HOH B 505 HOH B 520 HOH B 614 HOH B 657 SITE 9 AC8 37 HOH B 702 HOH B 720 HOH B 735 HOH B 804 SITE 10 AC8 37 HOH B 862 SITE 1 AC9 5 TRP B 173 TYR B 270 CYS B 294 ALA B 347 SITE 2 AC9 5 EDO B 408 SITE 1 BC1 16 TYR B 54 LEU B 179 ARG B 211 LEU B 213 SITE 2 BC1 16 TYR B 223 TYR B 270 PRO B 295 ALA B 296 SITE 3 BC1 16 ALA B 298 LEU B 352 FAD B 401 HOH B 552 SITE 4 BC1 16 HOH B 582 HOH B 664 HOH B 737 HOH B 862 SITE 1 BC2 12 LEU B 73 GLN B 74 GLY B 75 SER B 76 SITE 2 BC2 12 ASN B 97 ARG B 102 PRO B 378 HOH B 596 SITE 3 BC2 12 HOH B 612 HOH B 746 HOH B 827 HOH B 951 SITE 1 BC3 5 THR B 279 GLY B 281 VAL B 326 HOH B 514 SITE 2 BC3 5 HOH B 752 SITE 1 BC4 9 LYS B 42 ASN B 127 GLU B 129 GLN B 142 SITE 2 BC4 9 THR B 143 HOH B 611 HOH B 853 HOH B 855 SITE 3 BC4 9 HOH B 856 SITE 1 BC5 2 ARG B 367 TYR B 375 SITE 1 BC6 6 CYS B 294 GLY B 344 ALA B 347 ALA B 348 SITE 2 BC6 6 BME B 402 HOH B 699 CRYST1 111.446 129.526 89.565 90.00 122.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008973 0.000000 0.005760 0.00000 SCALE2 0.000000 0.007720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013268 0.00000