HEADER DNA 12-SEP-12 4H29 TITLE B-RAF DIMER DNA QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*GP*GP*CP*GP*GP*GP*GP*AP*GP*GP*GP*GP*GP*AP*AP*GP*GP*GP*A)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: B-RAF QUADRUPLEX DNA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS B-RAF QUADRUPLEX DNA, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.WEI,G.PARKINSON,S.NEIDLE REVDAT 3 28-FEB-24 4H29 1 REMARK LINK REVDAT 2 08-JAN-14 4H29 1 JRNL REVDAT 1 31-JUL-13 4H29 0 JRNL AUTH D.WEI,A.K.TODD,M.ZLOH,M.GUNARATNAM,G.N.PARKINSON,S.NEIDLE JRNL TITL CRYSTAL STRUCTURE OF A PROMOTER SEQUENCE IN THE B-RAF GENE JRNL TITL 2 REVEALS AN INTERTWINED DIMER QUADRUPLEX. JRNL REF J.AM.CHEM.SOC. V. 135 19319 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 24295054 JRNL DOI 10.1021/JA4101358 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 524 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4380 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 860 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 976 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1514 ; 0.860 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 158 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 466 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 976 ; 4.789 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1514 ; 6.668 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 25.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 10 MM MAGNESIUM CHLORIDE, 100 REMARK 280 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE AT PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 16.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 16.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.66000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 16.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 23.84000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.66000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 16.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 23.84000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 216 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 6 O6 72.9 REMARK 620 3 DG A 7 O6 92.6 80.7 REMARK 620 4 DG A 10 O6 75.0 133.1 67.4 REMARK 620 5 DG B 1 O6 111.0 71.1 134.9 154.2 REMARK 620 6 DG B 6 O6 74.4 114.8 154.5 87.9 70.6 REMARK 620 7 DG B 7 O6 136.1 150.6 99.1 71.1 89.8 77.3 REMARK 620 8 DG B 10 O6 153.7 87.6 66.4 108.4 77.7 131.0 66.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 73.1 REMARK 620 3 DG A 5 O6 103.8 78.8 REMARK 620 4 DG A 6 O6 65.3 119.4 71.1 REMARK 620 5 DG B 1 O6 98.8 167.8 112.5 62.9 REMARK 620 6 DG B 2 O6 165.6 117.4 70.6 100.4 72.3 REMARK 620 7 DG B 5 O6 115.4 72.8 120.7 165.8 103.6 78.2 REMARK 620 8 DG B 6 O6 65.1 106.7 164.4 93.8 61.2 117.3 74.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 7 O6 REMARK 620 2 DG A 8 O6 77.3 REMARK 620 3 DG A 10 O6 66.8 90.4 REMARK 620 4 DG A 11 O6 132.5 69.1 80.5 REMARK 620 5 DG B 7 O6 108.0 154.2 69.8 90.7 REMARK 620 6 DG B 8 O6 154.8 105.5 137.1 69.2 80.6 REMARK 620 7 DG B 10 O6 68.9 135.0 102.2 155.1 67.8 94.1 REMARK 620 8 DG B 11 O6 90.7 67.6 152.0 105.8 135.9 68.4 83.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 8 O6 REMARK 620 2 DG A 11 O6 69.8 REMARK 620 3 DG A 12 O6 131.6 76.9 REMARK 620 4 DG A 17 O6 158.2 129.4 68.8 REMARK 620 5 DG B 8 O6 109.0 71.6 91.9 73.5 REMARK 620 6 DG B 11 O6 68.2 108.0 158.4 93.4 70.7 REMARK 620 7 DG B 12 O6 93.2 158.1 107.0 70.3 128.8 76.5 REMARK 620 8 DG B 17 O6 73.7 92.5 73.8 111.4 160.9 125.9 68.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 12 O6 REMARK 620 2 DG A 13 O6 79.8 REMARK 620 3 DG A 17 O6 65.7 90.1 REMARK 620 4 DG A 18 O6 128.0 64.3 77.4 REMARK 620 5 DG B 12 O6 106.6 151.6 68.9 91.8 REMARK 620 6 DG B 13 O6 155.8 104.4 137.0 73.3 81.2 REMARK 620 7 DG B 17 O6 71.5 137.9 104.8 156.8 68.4 91.2 REMARK 620 8 DG B 18 O6 93.9 74.2 156.5 109.8 131.2 65.3 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 13 O6 REMARK 620 2 DG A 14 O6 75.6 REMARK 620 3 DG A 18 O6 60.7 90.2 REMARK 620 4 DG A 19 O6 125.7 75.3 74.7 REMARK 620 5 DG B 13 O6 100.1 159.3 70.5 91.9 REMARK 620 6 DG B 14 O6 155.1 124.0 127.4 77.4 66.9 REMARK 620 7 DG B 18 O6 69.0 131.3 100.1 153.4 62.2 86.1 REMARK 620 8 DG B 19 O6 93.2 77.1 153.3 122.9 123.6 78.4 72.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 102 DBREF 4H29 A 1 20 PDB 4H29 4H29 1 20 DBREF 4H29 B 1 20 PDB 4H29 4H29 1 20 SEQRES 1 A 20 DG DG DG DC DG DG DG DG DA DG DG DG DG SEQRES 2 A 20 DG DA DA DG DG DG DA SEQRES 1 B 20 DG DG DG DC DG DG DG DG DA DG DG DG DG SEQRES 2 B 20 DG DA DA DG DG DG DA HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET K B 101 1 HET K B 102 1 HETNAM K POTASSIUM ION FORMUL 3 K 6(K 1+) FORMUL 9 HOH *32(H2 O) LINK O6 DG A 1 K K B 101 1555 1555 2.75 LINK O6 DG A 1 K K B 102 1555 1555 2.95 LINK O6 DG A 2 K K B 102 1555 1555 2.65 LINK O6 DG A 5 K K B 102 1555 1555 2.49 LINK O6 DG A 6 K K B 101 1555 1555 2.71 LINK O6 DG A 6 K K B 102 1555 1555 3.06 LINK O6 DG A 7 K K A 104 1555 1555 2.70 LINK O6 DG A 7 K K B 101 1555 1555 2.90 LINK O6 DG A 8 K K A 101 1555 1555 2.86 LINK O6 DG A 8 K K A 104 1555 1555 2.87 LINK O6 DG A 10 K K A 104 1555 1555 3.06 LINK O6 DG A 10 K K B 101 1555 1555 2.85 LINK O6 DG A 11 K K A 101 1555 1555 2.83 LINK O6 DG A 11 K K A 104 1555 1555 2.87 LINK O6 DG A 12 K K A 101 1555 1555 2.77 LINK O6 DG A 12 K K A 102 1555 1555 2.84 LINK O6 DG A 13 K K A 102 1555 1555 2.74 LINK O6 DG A 13 K K A 103 1555 1555 2.88 LINK O6 DG A 14 K K A 103 1555 1555 2.63 LINK O6 DG A 17 K K A 101 1555 1555 2.73 LINK O6 DG A 17 K K A 102 1555 1555 2.89 LINK O6 DG A 18 K K A 102 1555 1555 2.86 LINK O6 DG A 18 K K A 103 1555 1555 3.02 LINK O6 DG A 19 K K A 103 1555 1555 2.74 LINK K K A 101 O6 DG B 8 1555 1555 2.74 LINK K K A 101 O6 DG B 11 1555 1555 2.78 LINK K K A 101 O6 DG B 12 1555 1555 2.80 LINK K K A 101 O6 DG B 17 1555 1555 2.82 LINK K K A 102 O6 DG B 12 1555 1555 2.75 LINK K K A 102 O6 DG B 13 1555 1555 2.85 LINK K K A 102 O6 DG B 17 1555 1555 2.90 LINK K K A 102 O6 DG B 18 1555 1555 2.80 LINK K K A 103 O6 DG B 13 1555 1555 2.89 LINK K K A 103 O6 DG B 14 1555 1555 2.69 LINK K K A 103 O6 DG B 18 1555 1555 3.02 LINK K K A 103 O6 DG B 19 1555 1555 2.54 LINK K K A 104 O6 DG B 7 1555 1555 2.77 LINK K K A 104 O6 DG B 8 1555 1555 2.86 LINK K K A 104 O6 DG B 10 1555 1555 2.80 LINK K K A 104 O6 DG B 11 1555 1555 2.82 LINK O6 DG B 1 K K B 101 1555 1555 2.70 LINK O6 DG B 1 K K B 102 1555 1555 2.96 LINK O6 DG B 2 K K B 102 1555 1555 2.71 LINK O6 DG B 5 K K B 102 1555 1555 2.42 LINK O6 DG B 6 K K B 101 1555 1555 2.52 LINK O6 DG B 6 K K B 102 1555 1555 2.98 LINK O6 DG B 7 K K B 101 1555 1555 2.91 LINK O6 DG B 10 K K B 101 1555 1555 2.79 SITE 1 AC1 10 DG A 8 DG A 11 DG A 12 DG A 17 SITE 2 AC1 10 K A 102 K A 104 DG B 8 DG B 11 SITE 3 AC1 10 DG B 12 DG B 17 SITE 1 AC2 10 DG A 12 DG A 13 DG A 17 DG A 18 SITE 2 AC2 10 K A 101 K A 103 DG B 12 DG B 13 SITE 3 AC2 10 DG B 17 DG B 18 SITE 1 AC3 9 DG A 13 DG A 14 DG A 18 DG A 19 SITE 2 AC3 9 K A 102 DG B 13 DG B 14 DG B 18 SITE 3 AC3 9 DG B 19 SITE 1 AC4 10 DG A 7 DG A 8 DG A 10 DG A 11 SITE 2 AC4 10 K A 101 DG B 7 DG B 8 DG B 10 SITE 3 AC4 10 DG B 11 K B 101 SITE 1 AC5 10 DG A 1 DG A 6 DG A 7 DG A 10 SITE 2 AC5 10 K A 104 DG B 1 DG B 6 DG B 7 SITE 3 AC5 10 DG B 10 K B 102 SITE 1 AC6 9 DG A 1 DG A 2 DG A 5 DG A 6 SITE 2 AC6 9 DG B 1 DG B 2 DG B 5 DG B 6 SITE 3 AC6 9 K B 101 CRYST1 33.460 47.680 137.320 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007282 0.00000