HEADER HYDROLASE/HYDROLASE INHIBITOR 12-SEP-12 4H2B TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): CRYSTAL FORM II (OPEN) IN COMPLEX TITLE 2 WITH BAICALIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-549; COMPND 5 SYNONYM: 5'-NT, ECTO-5'-NUCLEOTIDASE; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5, NT5E, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET45B(+) KEYWDS DIMER, HYDROLASE PHOSPHATASE NUCLEOTIDASE, EXTRACELLULAR, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,J.PIPPEL,K.KNAPP,N.STRAETER REVDAT 3 06-NOV-24 4H2B 1 REMARK SEQADV LINK REVDAT 2 26-DEC-12 4H2B 1 JRNL REVDAT 1 28-NOV-12 4H2B 0 JRNL AUTH K.KNAPP,M.ZEBISCH,J.PIPPEL,A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): JRNL TITL 2 INSIGHTS INTO THE REGULATION OF PURINERGIC SIGNALING. JRNL REF STRUCTURE V. 20 2161 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23142347 JRNL DOI 10.1016/J.STR.2012.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.743 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4376 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4185 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5984 ; 2.058 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9676 ; 0.950 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 8.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.697 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;13.029 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5025 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 981 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4555 33.8351 13.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0089 REMARK 3 T33: 0.0111 T12: -0.0023 REMARK 3 T13: -0.0013 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.5821 L22: 1.7461 REMARK 3 L33: 1.0802 L12: -0.2547 REMARK 3 L13: 0.1940 L23: 0.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.0229 S13: 0.0908 REMARK 3 S21: -0.1344 S22: -0.0262 S23: -0.0100 REMARK 3 S31: -0.0207 S32: 0.0386 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 549 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4678 10.6156 35.8932 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0128 REMARK 3 T33: 0.0566 T12: 0.0104 REMARK 3 T13: 0.0090 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.2431 L22: 1.7010 REMARK 3 L33: 1.0973 L12: 0.1820 REMARK 3 L13: 0.5025 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0593 S13: 0.0117 REMARK 3 S21: 0.0323 S22: 0.0409 S23: 0.1015 REMARK 3 S31: -0.0495 S32: -0.0373 S33: -0.0138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 6,000, 0.1 M TRIS-HCL, 1M REMARK 280 ZNCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.63150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.52800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.63150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.52800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -210.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.26300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ASN A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 PRO A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 PRO A 130 C - N - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 MET A 368 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP A 490 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 524 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 545 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 125.85 80.40 REMARK 500 SER A 185 -164.45 -172.78 REMARK 500 HIS A 243 -49.61 79.77 REMARK 500 SER A 255 -149.60 -144.09 REMARK 500 ALA A 280 54.28 -140.57 REMARK 500 TYR A 281 -123.73 60.07 REMARK 500 ASN A 306 148.14 -174.29 REMARK 500 ASP A 377 -158.90 -95.08 REMARK 500 ASN A 402 57.21 -98.29 REMARK 500 ASN A 402 60.47 -101.13 REMARK 500 LYS A 536 -50.71 72.54 REMARK 500 TYR A 539 51.21 -155.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 129 PRO A 130 -146.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 HIS A 38 NE2 117.1 REMARK 620 3 ASP A 85 OD2 91.3 95.2 REMARK 620 4 HOH A 727 O 97.8 144.1 75.0 REMARK 620 5 HOH A 748 O 98.1 89.3 166.4 93.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASN A 117 OD1 95.7 REMARK 620 3 HIS A 220 NE2 89.5 94.3 REMARK 620 4 HIS A 243 ND1 168.7 93.3 96.6 REMARK 620 5 HOH A 727 O 76.2 134.3 129.9 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 ASP A 237 OD1 138.4 REMARK 620 3 ASP A 237 OD2 84.0 55.3 REMARK 620 4 GLY A 298 O 83.8 90.1 94.1 REMARK 620 5 HOH A 773 O 82.0 138.9 165.8 86.6 REMARK 620 6 HOH A 876 O 84.5 96.3 81.1 167.8 95.3 REMARK 620 7 HOH A 910 O 150.2 70.1 125.3 88.7 68.8 103.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0XE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H1Y RELATED DB: PDB REMARK 900 PHOSPHATASE, CRYSTAL FORM II+PSB REMARK 900 RELATED ID: 4H2F RELATED DB: PDB REMARK 900 RELATED ID: 4H2I RELATED DB: PDB REMARK 900 RELATED ID: 4H2G RELATED DB: PDB DBREF 4H2B A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 4H2B MET A 3 UNP P21589 INITIATING METHIONINE SEQADV 4H2B ALA A 4 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 5 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 6 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 7 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 8 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 9 UNP P21589 EXPRESSION TAG SEQADV 4H2B HIS A 10 UNP P21589 EXPRESSION TAG SEQADV 4H2B VAL A 11 UNP P21589 EXPRESSION TAG SEQADV 4H2B GLY A 12 UNP P21589 EXPRESSION TAG SEQADV 4H2B THR A 13 UNP P21589 EXPRESSION TAG SEQADV 4H2B GLY A 14 UNP P21589 EXPRESSION TAG SEQADV 4H2B SER A 15 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASN A 16 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 17 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 18 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 19 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 20 UNP P21589 EXPRESSION TAG SEQADV 4H2B LYS A 21 UNP P21589 EXPRESSION TAG SEQADV 4H2B SER A 22 UNP P21589 EXPRESSION TAG SEQADV 4H2B PRO A 23 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 24 UNP P21589 EXPRESSION TAG SEQADV 4H2B PRO A 25 UNP P21589 EXPRESSION TAG SEQADV 4H2B PRO A 26 UNP P21589 EXPRESSION TAG SEQADV 4H2B ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 4H2B SER A 145 UNP P21589 LYS 145 ENGINEERED MUTATION SEQADV 4H2B SER A 147 UNP P21589 LYS 147 ENGINEERED MUTATION SEQADV 4H2B ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 4H2B ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 4H2B ALA A 376 UNP P21589 THR 376 VARIANT SEQADV 4H2B ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 4H2B SER A 478 UNP P21589 LYS 478 ENGINEERED MUTATION SEQRES 1 A 547 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 A 547 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO PRO TRP GLU SEQRES 3 A 547 LEU THR ILE LEU HIS THR ASN ASP VAL HIS SER ARG LEU SEQRES 4 A 547 GLU GLN THR SER GLU ASP SER SER LYS CYS VAL ASP ALA SEQRES 5 A 547 SER ARG CYS MET GLY GLY VAL ALA ARG LEU PHE THR LYS SEQRES 6 A 547 VAL GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL LEU LEU SEQRES 7 A 547 LEU ASP ALA GLY ASP GLN TYR GLN GLY THR ILE TRP PHE SEQRES 8 A 547 THR VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE MET ASN SEQRES 9 A 547 ALA LEU ARG TYR ASP ALA MET ALA LEU GLY ASN HIS GLU SEQRES 10 A 547 PHE ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO LEU LEU SEQRES 11 A 547 LYS GLU ALA LYS PHE PRO ILE LEU SER ALA ASN ILE SER SEQRES 12 A 547 ALA SER GLY PRO LEU ALA SER GLN ILE SER GLY LEU TYR SEQRES 13 A 547 LEU PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU VAL VAL SEQRES 14 A 547 GLY ILE VAL GLY TYR THR SER LYS GLU THR PRO PHE LEU SEQRES 15 A 547 SER ASN PRO GLY THR ASN LEU VAL PHE GLU ASP GLU ILE SEQRES 16 A 547 THR ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS THR LEU SEQRES 17 A 547 ASN VAL ASN LYS ILE ILE ALA LEU GLY HIS SER GLY PHE SEQRES 18 A 547 GLU MET ASP LYS LEU ILE ALA GLN LYS VAL ARG GLY VAL SEQRES 19 A 547 ASP VAL VAL VAL GLY GLY HIS SER ASN THR PHE LEU TYR SEQRES 20 A 547 THR GLY ASN PRO PRO SER LYS GLU VAL PRO ALA GLY LYS SEQRES 21 A 547 TYR PRO PHE ILE VAL THR SER ASP ASP GLY ARG LYS VAL SEQRES 22 A 547 PRO VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR LEU GLY SEQRES 23 A 547 TYR LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN VAL ILE SEQRES 24 A 547 SER SER HIS GLY ASN PRO ILE LEU LEU ASP SER SER ILE SEQRES 25 A 547 PRO GLU ASP PRO SER ILE LYS ALA ASP ILE ASN LYS TRP SEQRES 26 A 547 ARG ILE LYS LEU ASP ASP TYR SER THR GLN GLU LEU GLY SEQRES 27 A 547 LYS THR ILE VAL TYR LEU ASP GLY SER SER GLN SER CYS SEQRES 28 A 547 ARG PHE ARG GLU CYS ASN MET GLY ASN LEU ILE CYS ASP SEQRES 29 A 547 ALA MET ILE ASN ASN ASN LEU ARG HIS ALA ASP GLU MET SEQRES 30 A 547 PHE TRP ASN HIS VAL SER MET CYS ILE LEU ASN GLY GLY SEQRES 31 A 547 GLY ILE ARG SER PRO ILE ASP GLU ARG ASN ASP GLY THR SEQRES 32 A 547 ILE THR TRP GLU ASN LEU ALA ALA VAL LEU PRO PHE GLY SEQRES 33 A 547 GLY THR PHE ASP LEU VAL GLN LEU LYS GLY SER THR LEU SEQRES 34 A 547 LYS LYS ALA PHE GLU HIS SER VAL HIS ARG TYR GLY GLN SEQRES 35 A 547 SER THR GLY GLU PHE LEU GLN VAL GLY GLY ILE HIS VAL SEQRES 36 A 547 VAL TYR ASP LEU SER ARG LYS PRO GLY ASP ARG VAL VAL SEQRES 37 A 547 LYS LEU ASP VAL LEU CYS THR SER CYS ARG VAL PRO SER SEQRES 38 A 547 TYR ASP PRO LEU LYS MET ASP GLU VAL TYR LYS VAL ILE SEQRES 39 A 547 LEU PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY PHE GLN SEQRES 40 A 547 MET ILE LYS ASP GLU LEU LEU ARG HIS ASP SER GLY ASP SEQRES 41 A 547 GLN ASP ILE ASN VAL VAL SER THR TYR ILE SER LYS MET SEQRES 42 A 547 LYS VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE LYS PHE SEQRES 43 A 547 SER HET ZN A 601 1 HET ZN A 602 1 HET 0XE A 603 32 HET CA A 604 1 HET CL A 605 1 HETNAM ZN ZINC ION HETNAM 0XE 5,6-DIHYDROXY-4-OXO-2-PHENYL-4H-CHROMEN-7-YL BETA-D- HETNAM 2 0XE GLUCOPYRANOSIDURONIC ACID HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN 0XE BAICALIN FORMUL 2 ZN 2(ZN 2+) FORMUL 4 0XE C21 H18 O11 FORMUL 5 CA CA 2+ FORMUL 6 CL CL 1- FORMUL 7 HOH *406(H2 O) HELIX 1 1 ASP A 53 CYS A 57 5 5 HELIX 2 2 GLY A 60 GLU A 75 1 16 HELIX 3 3 THR A 90 LYS A 97 1 8 HELIX 4 4 GLY A 98 LEU A 108 1 11 HELIX 5 5 GLY A 116 ASP A 121 5 6 HELIX 6 6 VAL A 124 GLU A 129 1 6 HELIX 7 7 PRO A 130 ALA A 135 1 6 HELIX 8 8 GLY A 148 SER A 155 1 8 HELIX 9 9 GLU A 180 LEU A 184 5 5 HELIX 10 10 ASP A 195 LEU A 210 1 16 HELIX 11 11 GLY A 222 VAL A 233 1 12 HELIX 12 12 ASP A 317 SER A 335 1 19 HELIX 13 13 SER A 349 ARG A 354 1 6 HELIX 14 14 CYS A 358 ASN A 372 1 15 HELIX 15 15 GLY A 392 ILE A 394 5 3 HELIX 16 16 TRP A 408 LEU A 415 1 8 HELIX 17 17 GLY A 428 HIS A 440 1 13 HELIX 18 18 ASN A 499 ASN A 503 1 5 HELIX 19 19 GLY A 504 GLY A 507 5 4 HELIX 20 20 PHE A 508 LEU A 515 1 8 HELIX 21 21 ASP A 524 LYS A 536 1 13 SHEET 1 A 6 ILE A 139 LEU A 140 0 SHEET 2 A 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 A 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 A 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 A 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 A 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291 SHEET 1 B 6 ILE A 139 LEU A 140 0 SHEET 2 B 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 B 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 B 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 B 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 B 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 C 2 ILE A 144 ALA A 146 0 SHEET 2 C 2 LEU A 191 PHE A 193 -1 O VAL A 192 N SER A 145 SHEET 1 D 6 TYR A 161 VAL A 166 0 SHEET 2 D 6 GLU A 169 THR A 177 -1 O GLU A 169 N VAL A 166 SHEET 3 D 6 ILE A 215 HIS A 220 1 O ILE A 216 N VAL A 174 SHEET 4 D 6 VAL A 238 VAL A 240 1 O VAL A 240 N ALA A 217 SHEET 5 D 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 D 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 E 3 THR A 405 THR A 407 0 SHEET 2 E 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406 SHEET 3 E 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 F 5 LEU A 450 GLY A 453 0 SHEET 2 F 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 F 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 F 5 THR A 420 LYS A 427 -1 N ASP A 422 O LEU A 497 SHEET 5 F 5 ARG A 517 GLN A 523 -1 O ASP A 519 N LEU A 423 SHEET 1 G 4 TYR A 484 PRO A 486 0 SHEET 2 G 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 G 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 G 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.07 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.07 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.04 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.06 LINK OD1 ASP A 36 ZN ZN A 602 1555 1555 1.99 LINK NE2 HIS A 38 ZN ZN A 602 1555 1555 2.09 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.20 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.20 LINK OD1 ASN A 117 ZN ZN A 601 1555 1555 2.04 LINK O ASN A 213 CA CA A 604 1555 1555 2.40 LINK NE2 HIS A 220 ZN ZN A 601 1555 1555 2.07 LINK OD1 ASP A 237 CA CA A 604 1555 1555 2.41 LINK OD2 ASP A 237 CA CA A 604 1555 1555 2.48 LINK ND1 HIS A 243 ZN ZN A 601 1555 1555 2.17 LINK O GLY A 298 CA CA A 604 1555 1555 2.43 LINK ZN ZN A 601 O HOH A 727 1555 1555 1.97 LINK ZN ZN A 602 O HOH A 727 1555 1555 2.03 LINK ZN ZN A 602 O HOH A 748 1555 1555 2.05 LINK CA CA A 604 O HOH A 773 1555 1555 2.40 LINK CA CA A 604 O HOH A 876 1555 1555 2.39 LINK CA CA A 604 O HOH A 910 1555 1555 2.58 CISPEP 1 GLU A 129 PRO A 130 0 10.65 CISPEP 2 TYR A 263 PRO A 264 0 -8.71 SITE 1 AC1 7 ASP A 36 ASP A 85 ASN A 117 HIS A 220 SITE 2 AC1 7 HIS A 243 ZN A 602 HOH A 727 SITE 1 AC2 7 ASP A 36 HIS A 38 ASP A 85 SER A 520 SITE 2 AC2 7 ZN A 601 HOH A 727 HOH A 748 SITE 1 AC3 13 ASP A 47 ARG A 234 ARG A 354 ASN A 390 SITE 2 AC3 13 GLY A 392 GLY A 393 ARG A 395 PHE A 417 SITE 3 AC3 13 GLY A 447 PHE A 500 ASP A 506 HOH A 790 SITE 4 AC3 13 HOH A1052 SITE 1 AC4 6 ASN A 213 ASP A 237 GLY A 298 HOH A 773 SITE 2 AC4 6 HOH A 876 HOH A 910 SITE 1 AC5 4 PHE A 223 GLU A 224 HOH A 828 HOH A1030 CRYST1 67.263 131.056 66.238 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014867 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015097 0.00000