HEADER HYDROLASE 12-SEP-12 4H2I TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): CRYSTAL FORM III (CLOSED) IN TITLE 2 COMPLEX WITH AMPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-NT, ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, HYDROLASE, PHOSPHATASE, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR N.STRAETER,K.M.KNAPP,M.ZEBISCH,J.PIPPEL REVDAT 3 27-JUN-18 4H2I 1 REMARK SSBOND REVDAT 2 26-DEC-12 4H2I 1 JRNL REVDAT 1 28-NOV-12 4H2I 0 JRNL AUTH K.KNAPP,M.ZEBISCH,J.PIPPEL,A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): JRNL TITL 2 INSIGHTS INTO THE REGULATION OF PURINERGIC SIGNALING. JRNL REF STRUCTURE V. 20 2161 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23142347 JRNL DOI 10.1016/J.STR.2012.10.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4212 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5714 ; 2.021 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 7.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;37.811 ;24.681 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 725 ;15.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3171 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3117 21.3506 -16.3234 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.0867 REMARK 3 T33: 0.0653 T12: 0.0317 REMARK 3 T13: -0.0011 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.7192 L22: 1.7238 REMARK 3 L33: 3.2008 L12: -0.6068 REMARK 3 L13: 0.5931 L23: -0.9588 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: 0.0852 S13: 0.0124 REMARK 3 S21: 0.1399 S22: -0.0910 S23: -0.1019 REMARK 3 S31: -0.3837 S32: -0.0613 S33: 0.1308 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 549 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7331 19.0342 -48.7226 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.3080 REMARK 3 T33: 0.0300 T12: -0.0068 REMARK 3 T13: 0.0247 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.7936 L22: 1.3210 REMARK 3 L33: 5.6378 L12: -0.2628 REMARK 3 L13: 0.5430 L23: 1.4914 REMARK 3 S TENSOR REMARK 3 S11: -0.1797 S12: 0.1803 S13: 0.0500 REMARK 3 S21: -0.0222 S22: 0.1979 S23: -0.1141 REMARK 3 S31: -0.3242 S32: 0.7147 S33: -0.0182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4H2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 0.1 M CITRIC ACID , PH REMARK 280 5.0, VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.58000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.58000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.14000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.58000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.14000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.58000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.16000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -117.14000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1046 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1086 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 550 REMARK 465 GLU A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 205 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 328 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 401 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS A 476 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 524 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 83.07 -68.05 REMARK 500 GLN A 88 118.71 79.98 REMARK 500 LEU A 131 -60.20 -105.40 REMARK 500 SER A 141 122.25 -170.74 REMARK 500 GLN A 153 -72.10 -54.40 REMARK 500 SER A 185 -154.10 -134.30 REMARK 500 HIS A 243 -38.71 87.60 REMARK 500 SER A 255 -155.57 -147.99 REMARK 500 ALA A 280 54.97 -141.06 REMARK 500 TYR A 281 -122.44 59.03 REMARK 500 ASN A 306 151.72 176.21 REMARK 500 LEU A 373 26.06 -70.07 REMARK 500 ASP A 377 110.10 89.64 REMARK 500 MET A 379 -133.18 155.77 REMARK 500 ASN A 382 -51.68 79.48 REMARK 500 HIS A 383 109.58 -39.32 REMARK 500 ASP A 403 19.92 51.63 REMARK 500 ARG A 517 138.12 177.84 REMARK 500 LYS A 536 -51.36 67.05 REMARK 500 TYR A 539 60.58 -157.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1074 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 117 OD1 REMARK 620 2 A12 A 603 O3B 96.2 REMARK 620 3 HIS A 220 NE2 90.8 172.0 REMARK 620 4 HIS A 243 ND1 94.3 90.7 92.5 REMARK 620 5 ASP A 85 OD2 119.3 86.1 87.2 146.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 758 O REMARK 620 2 HIS A 38 NE2 100.5 REMARK 620 3 ASP A 36 OD2 86.3 124.2 REMARK 620 4 A12 A 603 O1B 88.5 97.1 138.6 REMARK 620 5 ASP A 85 OD2 160.2 99.1 84.9 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 298 O REMARK 620 2 ASN A 213 O 91.2 REMARK 620 3 ASP A 237 OD1 95.6 141.2 REMARK 620 4 ASP A 237 OD2 112.5 88.0 54.2 REMARK 620 5 HOH A 761 O 174.7 83.5 89.2 68.5 REMARK 620 6 HOH A 746 O 83.7 89.9 128.8 163.8 95.2 REMARK 620 7 HOH A 707 O 101.4 139.7 76.0 120.6 82.1 54.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A12 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H2F RELATED DB: PDB REMARK 900 RELATED ID: 4H2G RELATED DB: PDB REMARK 900 RELATED ID: 4H2B RELATED DB: PDB REMARK 900 RELATED ID: 4H1Y RELATED DB: PDB DBREF 4H2I A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 4H2I MET A 26 UNP P21589 INITIATING METHIONINE SEQADV 4H2I ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 4H2I ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 4H2I ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 4H2I ALA A 376 UNP P21589 THR 376 VARIANT SEQADV 4H2I ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 4H2I LEU A 550 UNP P21589 EXPRESSION TAG SEQADV 4H2I GLU A 551 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 552 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 553 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 554 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 555 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 556 UNP P21589 EXPRESSION TAG SEQADV 4H2I HIS A 557 UNP P21589 EXPRESSION TAG SEQRES 1 A 532 MET TRP GLU LEU THR ILE LEU HIS THR ASN ASP VAL HIS SEQRES 2 A 532 SER ARG LEU GLU GLN THR SER GLU ASP SER SER LYS CYS SEQRES 3 A 532 VAL ASP ALA SER ARG CYS MET GLY GLY VAL ALA ARG LEU SEQRES 4 A 532 PHE THR LYS VAL GLN GLN ILE ARG ARG ALA GLU PRO ASN SEQRES 5 A 532 VAL LEU LEU LEU ASP ALA GLY ASP GLN TYR GLN GLY THR SEQRES 6 A 532 ILE TRP PHE THR VAL TYR LYS GLY ALA GLU VAL ALA HIS SEQRES 7 A 532 PHE MET ASN ALA LEU ARG TYR ASP ALA MET ALA LEU GLY SEQRES 8 A 532 ASN HIS GLU PHE ASP ASN GLY VAL GLU GLY LEU ILE GLU SEQRES 9 A 532 PRO LEU LEU LYS GLU ALA LYS PHE PRO ILE LEU SER ALA SEQRES 10 A 532 ASN ILE LYS ALA LYS GLY PRO LEU ALA SER GLN ILE SER SEQRES 11 A 532 GLY LEU TYR LEU PRO TYR LYS VAL LEU PRO VAL GLY ASP SEQRES 12 A 532 GLU VAL VAL GLY ILE VAL GLY TYR THR SER LYS GLU THR SEQRES 13 A 532 PRO PHE LEU SER ASN PRO GLY THR ASN LEU VAL PHE GLU SEQRES 14 A 532 ASP GLU ILE THR ALA LEU GLN PRO GLU VAL ASP LYS LEU SEQRES 15 A 532 LYS THR LEU ASN VAL ASN LYS ILE ILE ALA LEU GLY HIS SEQRES 16 A 532 SER GLY PHE GLU MET ASP LYS LEU ILE ALA GLN LYS VAL SEQRES 17 A 532 ARG GLY VAL ASP VAL VAL VAL GLY GLY HIS SER ASN THR SEQRES 18 A 532 PHE LEU TYR THR GLY ASN PRO PRO SER LYS GLU VAL PRO SEQRES 19 A 532 ALA GLY LYS TYR PRO PHE ILE VAL THR SER ASP ASP GLY SEQRES 20 A 532 ARG LYS VAL PRO VAL VAL GLN ALA TYR ALA PHE GLY LYS SEQRES 21 A 532 TYR LEU GLY TYR LEU LYS ILE GLU PHE ASP GLU ARG GLY SEQRES 22 A 532 ASN VAL ILE SER SER HIS GLY ASN PRO ILE LEU LEU ASP SEQRES 23 A 532 SER SER ILE PRO GLU ASP PRO SER ILE LYS ALA ASP ILE SEQRES 24 A 532 ASN LYS TRP ARG ILE LYS LEU ASP ASP TYR SER THR GLN SEQRES 25 A 532 GLU LEU GLY LYS THR ILE VAL TYR LEU ASP GLY SER SER SEQRES 26 A 532 GLN SER CYS ARG PHE ARG GLU CYS ASN MET GLY ASN LEU SEQRES 27 A 532 ILE CYS ASP ALA MET ILE ASN ASN ASN LEU ARG HIS ALA SEQRES 28 A 532 ASP GLU MET PHE TRP ASN HIS VAL SER MET CYS ILE LEU SEQRES 29 A 532 ASN GLY GLY GLY ILE ARG SER PRO ILE ASP GLU ARG ASN SEQRES 30 A 532 ASP GLY THR ILE THR TRP GLU ASN LEU ALA ALA VAL LEU SEQRES 31 A 532 PRO PHE GLY GLY THR PHE ASP LEU VAL GLN LEU LYS GLY SEQRES 32 A 532 SER THR LEU LYS LYS ALA PHE GLU HIS SER VAL HIS ARG SEQRES 33 A 532 TYR GLY GLN SER THR GLY GLU PHE LEU GLN VAL GLY GLY SEQRES 34 A 532 ILE HIS VAL VAL TYR ASP LEU SER ARG LYS PRO GLY ASP SEQRES 35 A 532 ARG VAL VAL LYS LEU ASP VAL LEU CYS THR LYS CYS ARG SEQRES 36 A 532 VAL PRO SER TYR ASP PRO LEU LYS MET ASP GLU VAL TYR SEQRES 37 A 532 LYS VAL ILE LEU PRO ASN PHE LEU ALA ASN GLY GLY ASP SEQRES 38 A 532 GLY PHE GLN MET ILE LYS ASP GLU LEU LEU ARG HIS ASP SEQRES 39 A 532 SER GLY ASP GLN ASP ILE ASN VAL VAL SER THR TYR ILE SEQRES 40 A 532 SER LYS MET LYS VAL ILE TYR PRO ALA VAL GLU GLY ARG SEQRES 41 A 532 ILE LYS PHE SER LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 601 1 HET ZN A 602 1 HET A12 A 603 27 HET CL A 604 1 HET CA A 605 1 HETNAM ZN ZINC ION HETNAM A12 PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN A12 ALPHA,BETA-METHYLENEADENOSINE-5'-DIPHOSPHATE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 A12 C11 H17 N5 O9 P2 FORMUL 5 CL CL 1- FORMUL 6 CA CA 2+ FORMUL 7 HOH *392(H2 O) HELIX 1 1 ASP A 53 CYS A 57 5 5 HELIX 2 2 GLY A 60 GLU A 75 1 16 HELIX 3 3 THR A 90 LYS A 97 1 8 HELIX 4 4 GLY A 98 LEU A 108 1 11 HELIX 5 5 GLY A 116 ASP A 121 5 6 HELIX 6 6 VAL A 124 GLU A 129 1 6 HELIX 7 7 PRO A 149 SER A 152 1 4 HELIX 8 8 GLU A 180 SER A 185 1 6 HELIX 9 9 ASP A 195 LEU A 207 1 13 HELIX 10 10 GLY A 219 VAL A 233 1 15 HELIX 11 11 ASP A 317 ASP A 332 1 16 HELIX 12 12 ASP A 333 SER A 335 5 3 HELIX 13 13 SER A 349 ARG A 354 1 6 HELIX 14 14 CYS A 358 LEU A 373 1 16 HELIX 15 15 GLY A 392 ILE A 394 5 3 HELIX 16 16 THR A 407 LEU A 415 1 9 HELIX 17 17 GLY A 428 VAL A 439 1 12 HELIX 18 18 ASN A 499 ASN A 503 1 5 HELIX 19 19 GLY A 504 GLY A 504 5 1 HELIX 20 20 PHE A 508 LEU A 515 1 8 HELIX 21 21 GLN A 523 LYS A 536 1 14 SHEET 1 A 6 ILE A 139 LEU A 140 0 SHEET 2 A 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 A 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 A 6 TRP A 27 THR A 34 1 N LEU A 29 O LEU A 79 SHEET 5 A 6 TYR A 286 PHE A 294 -1 O LEU A 287 N ILE A 31 SHEET 6 A 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291 SHEET 1 B 6 ILE A 139 LEU A 140 0 SHEET 2 B 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 B 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 B 6 TRP A 27 THR A 34 1 N LEU A 29 O LEU A 79 SHEET 5 B 6 TYR A 286 PHE A 294 -1 O LEU A 287 N ILE A 31 SHEET 6 B 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 C 2 ILE A 144 ALA A 146 0 SHEET 2 C 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145 SHEET 1 D 6 TYR A 158 VAL A 163 0 SHEET 2 D 6 GLU A 169 THR A 177 -1 O GLU A 169 N VAL A 163 SHEET 3 D 6 ILE A 215 HIS A 220 1 O LEU A 218 N VAL A 171 SHEET 4 D 6 VAL A 238 VAL A 240 1 O VAL A 238 N ALA A 217 SHEET 5 D 6 LYS A 274 VAL A 275 1 O VAL A 275 N VAL A 236 SHEET 6 D 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 E 3 THR A 405 ILE A 406 0 SHEET 2 E 3 GLY A 340 THR A 342 -1 N GLY A 340 O ILE A 406 SHEET 3 E 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 F 5 LEU A 450 GLY A 453 0 SHEET 2 F 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 F 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 F 5 PHE A 421 LYS A 427 -1 N LEU A 423 O TYR A 493 SHEET 5 F 5 ARG A 517 ASP A 519 -1 O ASP A 519 N LEU A 423 SHEET 1 G 4 TYR A 484 PRO A 486 0 SHEET 2 G 4 VAL A 469 LEU A 472 -1 N VAL A 474 O ASP A 485 SHEET 3 G 4 ILE A 455 TYR A 459 -1 N VAL A 458 O VAL A 470 SHEET 4 G 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.05 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.12 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.02 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.05 LINK OD1 ASN A 117 ZN ZN A 602 1555 1555 1.88 LINK ZN ZN A 601 O HOH A 758 1555 1555 1.92 LINK NE2 HIS A 38 ZN ZN A 601 1555 1555 2.01 LINK OD2 ASP A 36 ZN ZN A 601 1555 1555 1.99 LINK ZN ZN A 601 O1B A12 A 603 1555 1555 2.06 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.09 LINK ZN ZN A 602 O3B A12 A 603 1555 1555 2.09 LINK NE2 HIS A 220 ZN ZN A 602 1555 1555 2.13 LINK ND1 HIS A 243 ZN ZN A 602 1555 1555 2.17 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.21 LINK O GLY A 298 CA CA A 605 1555 1555 2.22 LINK O ASN A 213 CA CA A 605 1555 1555 2.31 LINK OD1 ASP A 237 CA CA A 605 1555 1555 2.41 LINK OD2 ASP A 237 CA CA A 605 1555 1555 2.48 LINK CA CA A 605 O HOH A 761 1555 1555 2.58 LINK CA CA A 605 O HOH A 746 1555 1555 2.62 LINK CA CA A 605 O HOH A 707 1555 1555 3.03 CISPEP 1 TYR A 263 PRO A 264 0 -8.07 SITE 1 AC1 5 ASP A 36 HIS A 38 ASP A 85 A12 A 603 SITE 2 AC1 5 HOH A 758 SITE 1 AC2 5 ASP A 85 ASN A 117 HIS A 220 HIS A 243 SITE 2 AC2 5 A12 A 603 SITE 1 AC3 23 HIS A 38 ASP A 85 ASN A 117 HIS A 118 SITE 2 AC3 23 HIS A 243 ASN A 245 ARG A 354 ASN A 390 SITE 3 AC3 23 GLY A 392 GLY A 393 ARG A 395 PHE A 417 SITE 4 AC3 23 GLY A 447 PHE A 500 ASP A 506 ZN A 601 SITE 5 AC3 23 ZN A 602 HOH A 728 HOH A 731 HOH A 758 SITE 6 AC3 23 HOH A 829 HOH A 851 HOH A1050 SITE 1 AC4 4 PHE A 223 GLU A 224 HOH A1012 HOH A1048 SITE 1 AC5 6 ASN A 213 ASP A 237 GLY A 298 HOH A 707 SITE 2 AC5 6 HOH A 746 HOH A 761 CRYST1 53.160 94.860 234.280 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004268 0.00000