HEADER HYDROLASE 13-SEP-12 4H35 TITLE FERULOYL ESTERASE DOMAIN OF XYNY FROM CLOSTRIDIUM THERMOCELLUM BEFORE TITLE 2 EXPOSURE TO 266NM UV LASER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE Y; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FERULOYL ESTERASE DOMAIN (UNP RESIDUES 792-1077); COMPND 5 SYNONYM: XYNY, XYLANASE Y, 1,4-BETA-D-XYLAN XYLANOHYDROLASE Y, XYLY; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 GENE: XYNY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA AND BETA PROTEINS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.B.PEREIRA,D.DE SANCTIS REVDAT 3 15-NOV-17 4H35 1 REMARK REVDAT 2 20-FEB-13 4H35 1 JRNL REVDAT 1 12-DEC-12 4H35 0 JRNL AUTH P.J.PEREIRA,A.ROYANT,S.PANJIKAR,D.DE SANCTIS JRNL TITL IN-HOUSE UV RADIATION-DAMAGE-INDUCED PHASING OF JRNL TITL 2 SELENOMETHIONINE-LABELED PROTEIN STRUCTURES. JRNL REF J.STRUCT.BIOL. V. 181 89 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23178456 JRNL DOI 10.1016/J.JSB.2012.11.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 63616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8609 - 5.7890 0.99 3803 203 0.1687 0.1932 REMARK 3 2 5.7890 - 4.6409 0.99 3843 178 0.1406 0.1282 REMARK 3 3 4.6409 - 4.0680 0.99 3837 199 0.1242 0.1400 REMARK 3 4 4.0680 - 3.7024 1.00 3846 227 0.1367 0.1446 REMARK 3 5 3.7024 - 3.4405 1.00 3865 177 0.1489 0.1804 REMARK 3 6 3.4405 - 3.2399 1.00 3862 207 0.1612 0.1708 REMARK 3 7 3.2399 - 3.0791 1.00 3839 210 0.1594 0.1821 REMARK 3 8 3.0791 - 2.9462 1.00 3859 190 0.1577 0.1626 REMARK 3 9 2.9462 - 2.8336 1.00 3822 237 0.1630 0.1842 REMARK 3 10 2.8336 - 2.7364 1.00 3866 230 0.1594 0.1768 REMARK 3 11 2.7364 - 2.6513 1.00 3844 209 0.1549 0.1895 REMARK 3 12 2.6513 - 2.5760 1.00 3818 238 0.1555 0.1792 REMARK 3 13 2.5760 - 2.5085 1.00 3847 202 0.1509 0.1811 REMARK 3 14 2.5085 - 2.4475 1.00 3886 201 0.1492 0.1598 REMARK 3 15 2.4475 - 2.3921 1.00 3837 217 0.1448 0.1727 REMARK 3 16 2.3921 - 2.3414 1.00 3824 243 0.1455 0.1581 REMARK 3 17 2.3414 - 2.2948 1.00 3852 188 0.1558 0.1643 REMARK 3 18 2.2948 - 2.2516 1.00 3862 185 0.1499 0.1669 REMARK 3 19 2.2516 - 2.2115 1.00 3862 193 0.1511 0.1970 REMARK 3 20 2.2115 - 2.1742 1.00 3818 189 0.1535 0.1832 REMARK 3 21 2.1742 - 2.1392 1.00 3909 217 0.1568 0.1709 REMARK 3 22 2.1392 - 2.1064 1.00 3798 229 0.1598 0.1829 REMARK 3 23 2.1064 - 2.0755 1.00 3880 197 0.1638 0.2037 REMARK 3 24 2.0755 - 2.0463 1.00 3815 205 0.1873 0.2165 REMARK 3 25 2.0463 - 2.0187 1.00 3858 216 0.1832 0.2408 REMARK 3 26 2.0187 - 1.9926 1.00 3849 210 0.1841 0.1942 REMARK 3 27 1.9926 - 1.9677 1.00 3867 200 0.1822 0.1985 REMARK 3 28 1.9677 - 1.9441 1.00 3837 206 0.1917 0.2338 REMARK 3 29 1.9441 - 1.9215 1.00 3819 199 0.2000 0.2374 REMARK 3 30 1.9215 - 1.9000 0.96 3754 211 0.2211 0.2236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4754 REMARK 3 ANGLE : 1.107 6476 REMARK 3 CHIRALITY : 0.080 640 REMARK 3 PLANARITY : 0.005 850 REMARK 3 DIHEDRAL : 13.266 1672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63630 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 13.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: UV-RIP REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 1 M SODIUM REMARK 280 ACETATE, 50 MM CADMIUM ACETATE, 5% GLYCEROL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 789 REMARK 465 ALA A 790 REMARK 465 SER A 791 REMARK 465 ASP A 792 REMARK 465 LYS A 793 REMARK 465 PHE A 794 REMARK 465 PRO A 795 REMARK 465 VAL A 796 REMARK 465 ALA A 797 REMARK 465 GLU A 798 REMARK 465 ASN A 799 REMARK 465 PRO A 800 REMARK 465 SER A 801 REMARK 465 SER A 802 REMARK 465 MSE B 789 REMARK 465 ALA B 790 REMARK 465 SER B 791 REMARK 465 ASP B 792 REMARK 465 LYS B 793 REMARK 465 PHE B 794 REMARK 465 PRO B 795 REMARK 465 VAL B 796 REMARK 465 ALA B 797 REMARK 465 GLU B 798 REMARK 465 ASN B 799 REMARK 465 PRO B 800 REMARK 465 SER B 801 REMARK 465 SER B 802 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 1081 O HOH A 1320 1.40 REMARK 500 O HOH B 1252 O HOH B 1319 1.99 REMARK 500 OH TYR B 819 OE2 GLU B 892 1.99 REMARK 500 O HOH B 1307 O HOH B 1324 2.00 REMARK 500 OH TYR A 819 OE2 GLU A 892 2.03 REMARK 500 O LEU B 1034 O HOH B 1317 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1302 O HOH B 1324 2574 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 878 -47.68 -133.23 REMARK 500 THR A 931 -166.04 -103.18 REMARK 500 SEP A 954 -115.36 63.44 REMARK 500 SEP A 954 -115.86 63.44 REMARK 500 TRP A 982 42.72 -92.06 REMARK 500 THR A1040 148.56 172.49 REMARK 500 ASN A1047 18.95 -149.84 REMARK 500 VAL B 878 -53.08 -131.06 REMARK 500 THR B 931 -166.39 -105.84 REMARK 500 SEP B 954 -115.08 63.98 REMARK 500 THR B1040 150.49 175.95 REMARK 500 ASN B1047 16.44 -151.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1084 NE2 REMARK 620 2 HIS B1082 NE2 106.9 REMARK 620 3 HOH B1318 O 106.5 101.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1104 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1084 NE2 REMARK 620 2 HIS A1082 NE2 100.6 REMARK 620 3 HOH A1319 O 97.7 103.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 947 NE2 REMARK 620 2 HIS A1080 NE2 90.7 REMARK 620 3 HOH A1229 O 92.3 106.9 REMARK 620 4 HOH A1349 O 90.7 92.8 160.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 894 OE2 REMARK 620 2 HIS B1085 NE2 91.0 REMARK 620 3 GLU B1079 OE1 126.2 142.8 REMARK 620 4 HIS B1083 ND1 83.8 95.9 89.4 REMARK 620 5 HIS B1076 ND1 87.1 85.8 94.7 170.8 REMARK 620 6 GLU B1079 OE2 174.0 90.4 52.7 90.2 98.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1104 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1080 NE2 REMARK 620 2 HIS B 947 NE2 86.2 REMARK 620 3 HOH B1319 O 158.8 113.1 REMARK 620 4 HOH B1241 O 102.9 95.6 84.7 REMARK 620 5 HOH B1323 O 91.4 85.8 81.6 165.7 REMARK 620 6 HOH B1345 O 88.4 174.4 72.5 84.1 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1079 OE1 REMARK 620 2 GLU A 894 OE2 121.6 REMARK 620 3 HIS A1085 NE2 145.2 93.2 REMARK 620 4 HIS A1083 ND1 86.9 85.8 95.7 REMARK 620 5 HIS A1076 ND1 95.5 86.5 86.7 172.1 REMARK 620 6 GLU A1079 OE2 53.2 172.0 92.2 87.7 99.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 886 ND1 REMARK 620 2 CYS A 823 SG 95.7 REMARK 620 3 HOH A1209 O 89.5 126.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 886 ND1 REMARK 620 2 CYS B 823 SG 96.7 REMARK 620 3 HOH B1224 O 89.9 125.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GKK RELATED DB: PDB DBREF 4H35 A 792 1077 UNP P51584 XYNY_CLOTM 792 1077 DBREF 4H35 B 792 1077 UNP P51584 XYNY_CLOTM 792 1077 SEQADV 4H35 MSE A 789 UNP P51584 EXPRESSION TAG SEQADV 4H35 ALA A 790 UNP P51584 EXPRESSION TAG SEQADV 4H35 SER A 791 UNP P51584 EXPRESSION TAG SEQADV 4H35 GLU A 1017 UNP P51584 ASP 1017 CONFLICT SEQADV 4H35 ASP A 1018 UNP P51584 HIS 1018 CONFLICT SEQADV 4H35 LEU A 1078 UNP P51584 EXPRESSION TAG SEQADV 4H35 GLU A 1079 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1080 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1081 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1082 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1083 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1084 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS A 1085 UNP P51584 EXPRESSION TAG SEQADV 4H35 MSE B 789 UNP P51584 EXPRESSION TAG SEQADV 4H35 ALA B 790 UNP P51584 EXPRESSION TAG SEQADV 4H35 SER B 791 UNP P51584 EXPRESSION TAG SEQADV 4H35 GLU B 1017 UNP P51584 ASP 1017 CONFLICT SEQADV 4H35 ASP B 1018 UNP P51584 HIS 1018 CONFLICT SEQADV 4H35 LEU B 1078 UNP P51584 EXPRESSION TAG SEQADV 4H35 GLU B 1079 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1080 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1081 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1082 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1083 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1084 UNP P51584 EXPRESSION TAG SEQADV 4H35 HIS B 1085 UNP P51584 EXPRESSION TAG SEQRES 1 A 297 MSE ALA SER ASP LYS PHE PRO VAL ALA GLU ASN PRO SER SEQRES 2 A 297 SER SER PHE LYS TYR GLU SER ALA VAL GLN TYR ARG PRO SEQRES 3 A 297 ALA PRO ASP SER TYR LEU ASN PRO CYS PRO GLN ALA GLY SEQRES 4 A 297 ARG ILE VAL LYS GLU THR TYR THR GLY ILE ASN GLY THR SEQRES 5 A 297 LYS SER LEU ASN VAL TYR LEU PRO TYR GLY TYR ASP PRO SEQRES 6 A 297 ASN LYS LYS TYR ASN ILE PHE TYR LEU MSE HIS GLY GLY SEQRES 7 A 297 GLY GLU ASN GLU ASN THR ILE PHE SER ASN ASP VAL LYS SEQRES 8 A 297 LEU GLN ASN ILE LEU ASP HIS ALA ILE MSE ASN GLY GLU SEQRES 9 A 297 LEU GLU PRO LEU ILE VAL VAL THR PRO THR PHE ASN GLY SEQRES 10 A 297 GLY ASN CYS THR ALA GLN ASN PHE TYR GLN GLU PHE ARG SEQRES 11 A 297 GLN ASN VAL ILE PRO PHE VAL GLU SER LYS TYR SER THR SEQRES 12 A 297 TYR ALA GLU SER THR THR PRO GLN GLY ILE ALA ALA SER SEQRES 13 A 297 ARG MSE HIS ARG GLY PHE GLY GLY PHE SEP MSE GLY GLY SEQRES 14 A 297 LEU THR THR TRP TYR VAL MSE VAL ASN CYS LEU ASP TYR SEQRES 15 A 297 VAL ALA TYR PHE MSE PRO LEU SER GLY ASP TYR TRP TYR SEQRES 16 A 297 GLY ASN SER PRO GLN ASP LYS ALA ASN SER ILE ALA GLU SEQRES 17 A 297 ALA ILE ASN ARG SER GLY LEU SER LYS ARG GLU TYR PHE SEQRES 18 A 297 VAL PHE ALA ALA THR GLY SER GLU ASP ILE ALA TYR ALA SEQRES 19 A 297 ASN MSE ASN PRO GLN ILE GLU ALA MSE LYS ALA LEU PRO SEQRES 20 A 297 HIS PHE ASP TYR THR SER ASP PHE SER LYS GLY ASN PHE SEQRES 21 A 297 TYR PHE LEU VAL ALA PRO GLY ALA THR HIS TRP TRP GLY SEQRES 22 A 297 TYR VAL ARG HIS TYR ILE TYR ASP ALA LEU PRO TYR PHE SEQRES 23 A 297 PHE HIS GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 297 MSE ALA SER ASP LYS PHE PRO VAL ALA GLU ASN PRO SER SEQRES 2 B 297 SER SER PHE LYS TYR GLU SER ALA VAL GLN TYR ARG PRO SEQRES 3 B 297 ALA PRO ASP SER TYR LEU ASN PRO CYS PRO GLN ALA GLY SEQRES 4 B 297 ARG ILE VAL LYS GLU THR TYR THR GLY ILE ASN GLY THR SEQRES 5 B 297 LYS SER LEU ASN VAL TYR LEU PRO TYR GLY TYR ASP PRO SEQRES 6 B 297 ASN LYS LYS TYR ASN ILE PHE TYR LEU MSE HIS GLY GLY SEQRES 7 B 297 GLY GLU ASN GLU ASN THR ILE PHE SER ASN ASP VAL LYS SEQRES 8 B 297 LEU GLN ASN ILE LEU ASP HIS ALA ILE MSE ASN GLY GLU SEQRES 9 B 297 LEU GLU PRO LEU ILE VAL VAL THR PRO THR PHE ASN GLY SEQRES 10 B 297 GLY ASN CYS THR ALA GLN ASN PHE TYR GLN GLU PHE ARG SEQRES 11 B 297 GLN ASN VAL ILE PRO PHE VAL GLU SER LYS TYR SER THR SEQRES 12 B 297 TYR ALA GLU SER THR THR PRO GLN GLY ILE ALA ALA SER SEQRES 13 B 297 ARG MSE HIS ARG GLY PHE GLY GLY PHE SEP MSE GLY GLY SEQRES 14 B 297 LEU THR THR TRP TYR VAL MSE VAL ASN CYS LEU ASP TYR SEQRES 15 B 297 VAL ALA TYR PHE MSE PRO LEU SER GLY ASP TYR TRP TYR SEQRES 16 B 297 GLY ASN SER PRO GLN ASP LYS ALA ASN SER ILE ALA GLU SEQRES 17 B 297 ALA ILE ASN ARG SER GLY LEU SER LYS ARG GLU TYR PHE SEQRES 18 B 297 VAL PHE ALA ALA THR GLY SER GLU ASP ILE ALA TYR ALA SEQRES 19 B 297 ASN MSE ASN PRO GLN ILE GLU ALA MSE LYS ALA LEU PRO SEQRES 20 B 297 HIS PHE ASP TYR THR SER ASP PHE SER LYS GLY ASN PHE SEQRES 21 B 297 TYR PHE LEU VAL ALA PRO GLY ALA THR HIS TRP TRP GLY SEQRES 22 B 297 TYR VAL ARG HIS TYR ILE TYR ASP ALA LEU PRO TYR PHE SEQRES 23 B 297 PHE HIS GLU LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4H35 MSE A 863 MET SELENOMETHIONINE MODRES 4H35 MSE A 889 MET SELENOMETHIONINE MODRES 4H35 MSE A 946 MET SELENOMETHIONINE MODRES 4H35 SEP A 954 SER PHOSPHOSERINE MODRES 4H35 MSE A 955 MET SELENOMETHIONINE MODRES 4H35 MSE A 964 MET SELENOMETHIONINE MODRES 4H35 MSE A 975 MET SELENOMETHIONINE MODRES 4H35 MSE A 1024 MET SELENOMETHIONINE MODRES 4H35 MSE A 1031 MET SELENOMETHIONINE MODRES 4H35 MSE B 863 MET SELENOMETHIONINE MODRES 4H35 MSE B 889 MET SELENOMETHIONINE MODRES 4H35 MSE B 946 MET SELENOMETHIONINE MODRES 4H35 SEP B 954 SER PHOSPHOSERINE MODRES 4H35 MSE B 955 MET SELENOMETHIONINE MODRES 4H35 MSE B 964 MET SELENOMETHIONINE MODRES 4H35 MSE B 975 MET SELENOMETHIONINE MODRES 4H35 MSE B 1024 MET SELENOMETHIONINE MODRES 4H35 MSE B 1031 MET SELENOMETHIONINE HET MSE A 863 17 HET MSE A 889 17 HET MSE A 946 17 HET SEP A 954 13 HET MSE A 955 34 HET MSE A 964 17 HET MSE A 975 17 HET MSE A1024 17 HET MSE A1031 17 HET MSE B 863 17 HET MSE B 889 17 HET MSE B 946 17 HET SEP B 954 13 HET MSE B 955 17 HET MSE B 964 17 HET MSE B 975 17 HET MSE B1024 17 HET MSE B1031 17 HET CD A1101 1 HET CD A1102 1 HET CD A1103 1 HET CD A1104 1 HET CD B1101 1 HET CD B1102 1 HET CD B1103 1 HET CD B1104 1 HETNAM MSE SELENOMETHIONINE HETNAM SEP PHOSPHOSERINE HETNAM CD CADMIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 CD 8(CD 2+) FORMUL 11 HOH *315(H2 O) HELIX 1 1 PRO A 816 ASN A 821 5 6 HELIX 2 2 LYS A 879 ASN A 890 1 12 HELIX 3 3 ASN A 912 ASN A 920 1 9 HELIX 4 4 ASN A 920 TYR A 929 1 10 HELIX 5 5 THR A 937 ALA A 943 1 7 HELIX 6 6 SER A 944 MSE A 946 5 3 HELIX 7 7 SEP A 954 LEU A 968 1 15 HELIX 8 8 SER A 986 GLY A 1002 1 17 HELIX 9 9 ALA A 1020 ALA A 1033 1 14 HELIX 10 10 TRP A 1059 LEU A 1071 1 13 HELIX 11 11 PRO A 1072 PHE A 1074 5 3 HELIX 12 12 PRO B 816 ASN B 821 5 6 HELIX 13 13 LYS B 879 ASN B 890 1 12 HELIX 14 14 ASN B 912 ASN B 920 1 9 HELIX 15 15 ASN B 920 TYR B 929 1 10 HELIX 16 16 THR B 937 ALA B 943 1 7 HELIX 17 17 SER B 944 MSE B 946 5 3 HELIX 18 18 SEP B 954 LEU B 968 1 15 HELIX 19 19 SER B 986 GLY B 1002 1 17 HELIX 20 20 ILE B 1019 ALA B 1033 1 15 HELIX 21 21 TRP B 1059 LEU B 1071 1 13 HELIX 22 22 PRO B 1072 PHE B 1074 5 3 SHEET 1 A 8 ARG A 828 GLY A 836 0 SHEET 2 A 8 GLY A 839 LEU A 847 -1 O LEU A 843 N GLU A 832 SHEET 3 A 8 LEU A 896 THR A 900 -1 O VAL A 898 N TYR A 846 SHEET 4 A 8 ASN A 858 MSE A 863 1 N LEU A 862 O VAL A 899 SHEET 5 A 8 ARG A 948 PHE A 953 1 O GLY A 951 N MSE A 863 SHEET 6 A 8 TYR A 973 LEU A 977 1 O LEU A 977 N GLY A 952 SHEET 7 A 8 PHE A1009 GLY A1015 1 O PHE A1011 N PHE A 974 SHEET 8 A 8 PHE A1048 ALA A1053 1 O LEU A1051 N ALA A1012 SHEET 1 B 8 ARG B 828 GLY B 836 0 SHEET 2 B 8 GLY B 839 LEU B 847 -1 O LEU B 847 N ARG B 828 SHEET 3 B 8 LEU B 896 THR B 900 -1 O VAL B 898 N TYR B 846 SHEET 4 B 8 ASN B 858 MSE B 863 1 N LEU B 862 O VAL B 899 SHEET 5 B 8 ARG B 948 PHE B 953 1 O GLY B 949 N TYR B 861 SHEET 6 B 8 TYR B 973 LEU B 977 1 O TYR B 973 N PHE B 950 SHEET 7 B 8 PHE B1009 GLU B1017 1 O PHE B1011 N PHE B 974 SHEET 8 B 8 PHE B1048 THR B1057 1 O TYR B1049 N ALA B1012 LINK C LEU A 862 N MSE A 863 1555 1555 1.33 LINK C MSE A 863 N HIS A 864 1555 1555 1.33 LINK C ILE A 888 N MSE A 889 1555 1555 1.33 LINK C MSE A 889 N ASN A 890 1555 1555 1.33 LINK C ARG A 945 N MSE A 946 1555 1555 1.33 LINK C MSE A 946 N HIS A 947 1555 1555 1.33 LINK C PHE A 953 N SEP A 954 1555 1555 1.33 LINK C SEP A 954 N AMSE A 955 1555 1555 1.33 LINK C SEP A 954 N BMSE A 955 1555 1555 1.34 LINK C AMSE A 955 N GLY A 956 1555 1555 1.33 LINK C BMSE A 955 N GLY A 956 1555 1555 1.33 LINK C VAL A 963 N MSE A 964 1555 1555 1.33 LINK C MSE A 964 N VAL A 965 1555 1555 1.33 LINK C PHE A 974 N MSE A 975 1555 1555 1.33 LINK C MSE A 975 N PRO A 976 1555 1555 1.34 LINK C ASN A1023 N MSE A1024 1555 1555 1.33 LINK C MSE A1024 N ASN A1025 1555 1555 1.33 LINK C ALA A1030 N MSE A1031 1555 1555 1.33 LINK C MSE A1031 N LYS A1032 1555 1555 1.34 LINK C LEU B 862 N MSE B 863 1555 1555 1.33 LINK C MSE B 863 N HIS B 864 1555 1555 1.33 LINK C ILE B 888 N MSE B 889 1555 1555 1.33 LINK C MSE B 889 N ASN B 890 1555 1555 1.33 LINK C ARG B 945 N MSE B 946 1555 1555 1.33 LINK C MSE B 946 N HIS B 947 1555 1555 1.33 LINK C PHE B 953 N SEP B 954 1555 1555 1.33 LINK C SEP B 954 N MSE B 955 1555 1555 1.33 LINK C MSE B 955 N GLY B 956 1555 1555 1.33 LINK C VAL B 963 N MSE B 964 1555 1555 1.33 LINK C MSE B 964 N VAL B 965 1555 1555 1.32 LINK C PHE B 974 N MSE B 975 1555 1555 1.33 LINK C MSE B 975 N PRO B 976 1555 1555 1.34 LINK C ASN B1023 N MSE B1024 1555 1555 1.33 LINK C MSE B1024 N ASN B1025 1555 1555 1.33 LINK C ALA B1030 N MSE B1031 1555 1555 1.33 LINK C MSE B1031 N LYS B1032 1555 1555 1.33 LINK NE2 HIS B1084 CD CD B1103 1555 1555 2.37 LINK NE2 HIS A1084 CD CD A1104 1555 1555 2.37 LINK NE2 HIS A 947 CD CD A1102 1555 1555 2.41 LINK OE2 GLU B 894 CD CD B1102 1555 1555 2.42 LINK NE2 HIS B1080 CD CD B1104 1555 1555 2.42 LINK OE1 GLU A1079 CD CD A1103 1555 1555 2.42 LINK OE2 GLU A 894 CD CD A1103 1555 1555 2.42 LINK NE2 HIS A1082 CD CD A1104 1555 1555 2.43 LINK NE2 HIS B1085 CD CD B1102 1555 1555 2.44 LINK NE2 HIS A1085 CD CD A1103 1555 1555 2.45 LINK NE2 HIS B 947 CD CD B1104 1555 1555 2.45 LINK NE2 HIS A1080 CD CD A1102 1555 1555 2.46 LINK OE1 GLU B1079 CD CD B1102 1555 1555 2.46 LINK NE2 HIS B1082 CD CD B1103 1555 1555 2.46 LINK ND1 HIS B1083 CD CD B1102 1555 1555 2.47 LINK ND1 HIS A 886 CD CD A1101 1555 1555 2.50 LINK ND1 HIS B1076 CD CD B1102 1555 1555 2.50 LINK ND1 HIS A1083 CD CD A1103 1555 1555 2.51 LINK ND1 HIS A1076 CD CD A1103 1555 1555 2.51 LINK OE2 GLU A1079 CD CD A1103 1555 1555 2.52 LINK OE2 GLU B1079 CD CD B1102 1555 1555 2.52 LINK ND1 HIS B 886 CD CD B1101 1555 1555 2.53 LINK SG CYS A 823 CD CD A1101 1555 1555 2.62 LINK SG CYS B 823 CD CD B1101 1555 1555 2.62 LINK CD CD A1101 O HOH A1209 1555 1555 2.48 LINK CD CD B1101 O HOH B1224 1555 1555 2.49 LINK CD CD A1104 O HOH A1319 1555 1555 2.51 LINK CD CD B1104 O HOH B1319 1555 1555 2.53 LINK CD CD A1102 O HOH A1229 1555 1555 2.53 LINK CD CD B1103 O HOH B1318 1555 1555 2.54 LINK CD CD B1104 O HOH B1241 1555 1555 2.55 LINK CD CD B1104 O HOH B1323 1555 1555 2.56 LINK CD CD A1102 O HOH A1349 1555 1555 2.59 LINK CD CD B1104 O HOH B1345 1555 1555 2.59 SITE 1 AC1 5 CYS A 823 HIS A 886 MSE A 889 HOH A1209 SITE 2 AC1 5 GLU B1017 SITE 1 AC2 4 HIS A 947 HIS A1080 HOH A1229 HOH A1349 SITE 1 AC3 5 GLU A 894 HIS A1076 GLU A1079 HIS A1083 SITE 2 AC3 5 HIS A1085 SITE 1 AC4 4 HIS A1082 HIS A1084 HOH A1319 GLU B1007 SITE 1 AC5 5 GLU A1017 CYS B 823 HIS B 886 MSE B 889 SITE 2 AC5 5 HOH B1224 SITE 1 AC6 5 GLU B 894 HIS B1076 GLU B1079 HIS B1083 SITE 2 AC6 5 HIS B1085 SITE 1 AC7 4 GLU A1007 HIS B1082 HIS B1084 HOH B1318 SITE 1 AC8 6 HIS B 947 HIS B1080 HOH B1241 HOH B1319 SITE 2 AC8 6 HOH B1323 HOH B1345 CRYST1 65.370 108.400 112.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015298 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008861 0.00000