HEADER PLANT PROTEIN 14-SEP-12 4H3O TITLE CRYSTAL STRUCTURE OF A NEW FORM OF LECTIN FROM ALLIUM SATIVUM AT 2.17 TITLE 2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 3 ORGANISM_TAXID: 4682 KEYWDS LECTIN, CADMIUM, PLANT PROTEIN, BULB LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,S.YAMINI,J.KUMAR,P.KAUR,T.P.SINGH,S.DEY REVDAT 2 20-SEP-23 4H3O 1 REMARK LINK REVDAT 1 26-SEP-12 4H3O 0 JRNL AUTH S.KUMAR,S.YAMINI,J.KUMAR,P.KAUR,T.P.SINGH,S.DEY JRNL TITL CRYSTAL STRUCTURE OF A NEW FORM OF LECTIN FROM ALLIUM JRNL TITL 2 SATIVUM AT 2.17 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 10285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.351 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1656 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2256 ; 1.091 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 7.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;30.182 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;14.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1298 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1030 ; 0.378 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1648 ; 0.723 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 626 ; 0.807 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 608 ; 1.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 49.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1KJ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M CADMIUM SULFATE HYDRATE, 0.1M REMARK 280 HEPES, 1.0M SODIUM CHLORIDE , PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.75650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.72450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.61700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.72450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.75650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.61700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 36 NE2 HIS A 36 CD2 -0.071 REMARK 500 HIS A 77 NE2 HIS A 77 CD2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 46 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 36 -137.43 53.49 REMARK 500 HIS B 36 -132.34 47.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 HOH B 304 O 103.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 5 OD1 REMARK 620 2 GLU B 8 OE2 113.0 REMARK 620 3 GLU B 8 OE1 79.1 47.4 REMARK 620 4 HOH B 378 O 159.6 65.7 87.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 7 ND2 REMARK 620 2 ASN B 7 OD1 53.9 REMARK 620 3 SER B 59 OG 93.0 89.4 REMARK 620 4 HOH B 358 O 93.3 145.9 82.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 7 O REMARK 620 2 HOH B 305 O 95.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 19 OE1 REMARK 620 2 GLU B 19 OE2 55.1 REMARK 620 3 HIS B 22 NE2 109.1 86.3 REMARK 620 4 HOH B 393 O 89.5 144.6 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 46 OE1 REMARK 620 2 GLU B 46 OE2 57.7 REMARK 620 3 HOH B 380 O 67.2 80.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KJ1 RELATED DB: PDB DBREF 4H3O A 1 105 PDB 4H3O 4H3O 1 105 DBREF 4H3O B 1 105 PDB 4H3O 4H3O 1 105 SEQRES 1 A 105 ARG ASN ILE LEU ASP ASN ASN GLU GLY LEU TYR ALA GLY SEQRES 2 A 105 GLN SER LEU ASP VAL GLU PRO TYR HIS PHE ILE MET GLN SEQRES 3 A 105 ASP ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 A 105 THR TRP ALA SER ASN THR GLU ILE GLY GLY LYS SER GLY SEQRES 5 A 105 CYS SER ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 A 105 TYR ASP SER SER GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 A 105 THR ARG GLY SER GLY ASN TYR ILE LEU ILE LEU GLN ASP SEQRES 8 A 105 ASP GLY ASN VAL ILE ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 A 105 THR SEQRES 1 B 105 ARG ASN ILE LEU ASP ASN ASN GLU GLY LEU TYR ALA GLY SEQRES 2 B 105 GLN SER LEU ASP VAL GLU PRO TYR HIS PHE ILE MET GLN SEQRES 3 B 105 ASP ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 B 105 THR TRP ALA SER ASN THR GLU ILE GLY GLY LYS SER GLY SEQRES 5 B 105 CYS SER ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 B 105 TYR ASP SER SER GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 B 105 THR ARG GLY SER GLY ASN TYR ILE LEU ILE LEU GLN ASP SEQRES 8 B 105 ASP GLY ASN VAL ILE ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 B 105 THR HET CD A 201 1 HET CD A 202 1 HET CD B 201 1 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET NA B 206 1 HETNAM CD CADMIUM ION HETNAM NA SODIUM ION FORMUL 3 CD 7(CD 2+) FORMUL 10 NA NA 1+ FORMUL 11 HOH *195(H2 O) SHEET 1 A 4 ILE A 3 LEU A 4 0 SHEET 2 A 4 TYR A 85 LEU A 89 -1 O LEU A 87 N LEU A 4 SHEET 3 A 4 VAL A 95 GLY A 99 -1 O ILE A 96 N ILE A 88 SHEET 4 A 4 ASP B 101 SER B 104 -1 O ILE B 102 N ILE A 97 SHEET 1 B 4 GLU A 8 LEU A 10 0 SHEET 2 B 4 SER A 54 LEU A 57 -1 O ALA A 55 N LEU A 10 SHEET 3 B 4 PHE A 63 TYR A 66 -1 O TYR A 66 N SER A 54 SHEET 4 B 4 SER A 72 ALA A 75 -1 O LEU A 73 N VAL A 65 SHEET 1 C 4 SER A 15 VAL A 18 0 SHEET 2 C 4 TYR A 21 MET A 25 -1 O TYR A 21 N VAL A 18 SHEET 3 C 4 LEU A 31 ASP A 35 -1 O TYR A 34 N HIS A 22 SHEET 4 C 4 THR A 38 ALA A 42 -1 O TRP A 41 N LEU A 33 SHEET 1 D 4 ASP A 101 THR A 105 0 SHEET 2 D 4 VAL B 95 TYR B 98 -1 O ILE B 97 N ILE A 102 SHEET 3 D 4 ILE B 86 LEU B 89 -1 N ILE B 88 O ILE B 96 SHEET 4 D 4 ILE B 3 LEU B 4 -1 N LEU B 4 O LEU B 87 SHEET 1 E 4 GLU B 8 LEU B 10 0 SHEET 2 E 4 SER B 54 LEU B 57 -1 O ALA B 55 N LEU B 10 SHEET 3 E 4 PHE B 63 TYR B 66 -1 O TYR B 66 N SER B 54 SHEET 4 E 4 SER B 72 ALA B 75 -1 O TRP B 74 N VAL B 65 SHEET 1 F 4 SER B 15 VAL B 18 0 SHEET 2 F 4 TYR B 21 MET B 25 -1 O TYR B 21 N VAL B 18 SHEET 3 F 4 LEU B 31 ASP B 35 -1 O TYR B 34 N HIS B 22 SHEET 4 F 4 THR B 38 ALA B 42 -1 O THR B 38 N ASP B 35 SSBOND 1 CYS A 29 CYS A 53 1555 1555 2.02 SSBOND 2 CYS B 29 CYS B 53 1555 1555 2.03 LINK OE2 GLU A 8 CD CD A 202 1555 1555 2.42 LINK OE2 GLU A 46 CD CD A 201 1555 1555 2.46 LINK CD CD A 202 O HOH B 304 1555 1555 2.51 LINK OD1 ASP B 5 NA NA B 206 1555 1555 3.04 LINK ND2 ASN B 7 CD CD B 203 1555 1555 2.30 LINK OD1 ASN B 7 CD CD B 203 1555 1555 2.62 LINK O ASN B 7 CD CD B 204 1555 1555 2.09 LINK OE2 GLU B 8 NA NA B 206 1555 1555 2.54 LINK OE1 GLU B 8 NA NA B 206 1555 1555 2.87 LINK OE1 GLU B 19 CD CD B 202 1555 1555 2.33 LINK OE2 GLU B 19 CD CD B 202 1555 1555 2.39 LINK NE2 HIS B 22 CD CD B 202 1555 1555 2.24 LINK OE1 GLU B 46 CD CD B 201 1555 1555 2.22 LINK OE2 GLU B 46 CD CD B 201 1555 1555 2.35 LINK OG SER B 59 CD CD B 203 1555 1555 2.40 LINK CD CD B 201 O HOH B 380 1555 1555 2.60 LINK CD CD B 202 O HOH B 393 1555 1555 2.17 LINK CD CD B 203 O HOH B 358 1555 1555 2.46 LINK CD CD B 204 O HOH B 305 1555 1555 2.19 LINK CD CD B 205 O HOH B 391 1555 1555 2.25 LINK NA NA B 206 O HOH B 378 1555 1555 2.13 CISPEP 1 GLU A 19 PRO A 20 0 4.89 CISPEP 2 GLY A 99 SER A 100 0 0.45 CISPEP 3 GLU B 19 PRO B 20 0 3.29 CISPEP 4 GLY B 99 SER B 100 0 1.82 SITE 1 AC1 1 GLU A 46 SITE 1 AC2 5 ASP A 5 GLU A 8 ASP B 91 HOH B 304 SITE 2 AC2 5 HOH B 385 SITE 1 AC3 3 GLU B 46 HIS B 77 HOH B 380 SITE 1 AC4 4 ASP A 35 GLU B 19 HIS B 22 HOH B 393 SITE 1 AC5 5 HIS A 36 ASN B 7 HIS B 36 SER B 59 SITE 2 AC5 5 HOH B 358 SITE 1 AC6 4 GLU A 19 HIS A 22 ASN B 7 HOH B 305 SITE 1 AC7 5 ASP B 35 HIS B 36 ASP B 60 HOH B 391 SITE 2 AC7 5 HOH B 394 SITE 1 AC8 3 ASP B 5 GLU B 8 HOH B 378 CRYST1 35.513 57.234 97.449 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010262 0.00000