HEADER TRANSFERASE 14-SEP-12 4H3Y TITLE CRYSTAL STRUCTURE OF AN ASYMMETRIC DIMER OF A TRNA (GUANINE-(N(1)-)- TITLE 2 METHYLTRANSFERASE FROM BURKHOLDERIA PHYMATUM BOUND TO S-ADENOSYL TITLE 3 HOMOCYSTEIN IN ONE HALF-SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PHYMATUM; SOURCE 3 ORGANISM_TAXID: 391038; SOURCE 4 STRAIN: DSM 17167 STM815; SOURCE 5 GENE: BPHY_0771, TRMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRMD, M1G-METHYLTRANSFERASE, G37 KEYWDS 4 METHYLTRANSFERASE, S-ADENOSYL-METHIONINE, SAM, S-ADENOSYL- KEYWDS 5 HOMOCYSTEINE, SAH, TRNA MODIFICATION, TRANSFERASE, PROTEOBACTERIA, KEYWDS 6 NITROGEN FIXATION, FOOD PATHOGEN, DOMAIN SWAPPED HOMODIMER EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4H3Y 1 REMARK SEQADV REVDAT 2 30-OCT-13 4H3Y 1 JRNL REVDAT 1 03-OCT-12 4H3Y 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3968 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3702 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5405 ; 1.465 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8443 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;30.873 ;23.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;15.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 604 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4589 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2492 -29.1594 -15.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.0556 T22: 0.0810 REMARK 3 T33: 0.0495 T12: 0.0402 REMARK 3 T13: -0.0400 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0713 L22: 0.7665 REMARK 3 L33: 0.3853 L12: -0.0426 REMARK 3 L13: 0.0375 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0439 S13: -0.0315 REMARK 3 S21: -0.1545 S22: -0.0759 S23: 0.0877 REMARK 3 S31: -0.0370 S32: -0.0922 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1377 -26.9019 -10.7956 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.0789 REMARK 3 T33: 0.0892 T12: -0.0373 REMARK 3 T13: -0.0115 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.3450 L22: 1.0998 REMARK 3 L33: 0.5689 L12: -0.4674 REMARK 3 L13: 0.0329 L23: 0.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: 0.0506 S13: 0.0707 REMARK 3 S21: -0.0670 S22: 0.0325 S23: -0.0195 REMARK 3 S31: -0.1412 S32: 0.1754 S33: 0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4H3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 3AXZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPHA.00054.A.A1 PS01368 AT 35.3 MG/ML REMARK 280 AGAINST JCSG II SCREEN CONDITION F12, 0.1 M PHOSPHATE-CITRATE PH REMARK 280 4.2, 5% PEG 3000, 25% 1,2 PROPANEDIOL, 10% GLYCEROL, CRYSTAL REMARK 280 TRACKING ID 230666F12, UNIQUE PUCK ID ZJG9-5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.70000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.70000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.82000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.70000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.82000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.70000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 255 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 GLN B 172 REMARK 465 HIS B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ILE A 21 CG1 CG2 CD1 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 45 CG OD1 ND2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 SER A 253 OG REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 VAL B 171 CG1 CG2 REMARK 470 ASP B 173 CG OD1 OD2 REMARK 470 GLN B 210 CG CD OE1 NE2 REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 218 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 218 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 119 -160.22 65.71 REMARK 500 ASN A 165 -157.99 -76.09 REMARK 500 HIS A 205 24.66 -75.08 REMARK 500 ALA A 206 -41.05 -131.73 REMARK 500 GLU B 29 35.65 74.14 REMARK 500 ARG B 118 -142.87 -99.38 REMARK 500 TYR B 119 78.91 -109.96 REMARK 500 GLU B 120 129.64 -175.77 REMARK 500 PHE B 175 -17.99 79.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H3Z RELATED DB: PDB REMARK 900 SAME PROTEIN AS SYMMETRIC DIMER WITH SAH IN BOTH HALF-SITES REMARK 900 RELATED ID: BUPHA.00054.A RELATED DB: TARGETTRACK DBREF 4H3Y A 1 255 UNP B2JF31 TRMD_BURP8 1 255 DBREF 4H3Y B 1 255 UNP B2JF31 TRMD_BURP8 1 255 SEQADV 4H3Y MET A -20 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y ALA A -19 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -18 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -17 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -16 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -15 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -14 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS A -13 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y MET A -12 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY A -11 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y THR A -10 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y LEU A -9 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLU A -8 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y ALA A -7 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLN A -6 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y THR A -5 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLN A -4 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY A -3 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y PRO A -2 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY A -1 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y SER A 0 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y MET B -20 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y ALA B -19 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -18 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -17 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -16 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -15 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -14 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y HIS B -13 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y MET B -12 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY B -11 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y THR B -10 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y LEU B -9 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLU B -8 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y ALA B -7 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLN B -6 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y THR B -5 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLN B -4 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY B -3 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y PRO B -2 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y GLY B -1 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Y SER B 0 UNP B2JF31 EXPRESSION TAG SEQRES 1 A 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 276 ALA GLN THR GLN GLY PRO GLY SER MET GLN PHE ASP ILE SEQRES 3 A 276 VAL THR LEU PHE PRO ASP MET PHE ARG ALA LEU THR ASP SEQRES 4 A 276 TRP GLY ILE THR SER ARG ALA ALA LYS GLN GLU ARG TYR SEQRES 5 A 276 GLY LEU ARG THR TRP ASN PRO ARG ASP PHE THR THR ASP SEQRES 6 A 276 ASN TYR ARG THR ILE ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 7 A 276 PRO GLY MET VAL MET LEU ALA ARG PRO LEU GLU ASP ALA SEQRES 8 A 276 ILE ASN ALA ALA LYS ALA ALA GLN ALA GLU GLN GLY ILE SEQRES 9 A 276 GLY GLY ALA ARG VAL VAL MET MET SER PRO GLN GLY ALA SEQRES 10 A 276 THR LEU ASN HIS ASP LYS VAL MET ARG PHE ALA ALA GLU SEQRES 11 A 276 PRO GLY LEU ILE LEU LEU CYS GLY ARG TYR GLU ALA ILE SEQRES 12 A 276 ASP GLN ARG LEU ILE ASP ARG VAL VAL ASP GLU GLU VAL SEQRES 13 A 276 SER LEU GLY ASP PHE VAL LEU SER GLY GLY GLU LEU PRO SEQRES 14 A 276 ALA MET ALA LEU ILE ASP ALA VAL VAL ARG HIS LEU PRO SEQRES 15 A 276 GLY VAL LEU ASN ASP ALA GLN SER ALA VAL GLN ASP SER SEQRES 16 A 276 PHE VAL ASP GLY LEU LEU ASP CYS PRO HIS TYR THR ARG SEQRES 17 A 276 PRO GLU GLU TYR ASP GLY VAL ARG VAL PRO ASP VAL LEU SEQRES 18 A 276 LEU GLY GLY HIS HIS ALA GLU ILE GLU GLN TRP ARG ARG SEQRES 19 A 276 ARG GLU ALA LEU ARG ASN THR TRP LEU LYS ARG PRO ASP SEQRES 20 A 276 LEU ILE VAL GLN ALA ARG LYS ASN LYS LEU LEU SER ARG SEQRES 21 A 276 ALA ASP GLU ALA TRP LEU ALA SER LEU ALA LYS ASP ALA SEQRES 22 A 276 SER LYS HIS SEQRES 1 B 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 276 ALA GLN THR GLN GLY PRO GLY SER MET GLN PHE ASP ILE SEQRES 3 B 276 VAL THR LEU PHE PRO ASP MET PHE ARG ALA LEU THR ASP SEQRES 4 B 276 TRP GLY ILE THR SER ARG ALA ALA LYS GLN GLU ARG TYR SEQRES 5 B 276 GLY LEU ARG THR TRP ASN PRO ARG ASP PHE THR THR ASP SEQRES 6 B 276 ASN TYR ARG THR ILE ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 7 B 276 PRO GLY MET VAL MET LEU ALA ARG PRO LEU GLU ASP ALA SEQRES 8 B 276 ILE ASN ALA ALA LYS ALA ALA GLN ALA GLU GLN GLY ILE SEQRES 9 B 276 GLY GLY ALA ARG VAL VAL MET MET SER PRO GLN GLY ALA SEQRES 10 B 276 THR LEU ASN HIS ASP LYS VAL MET ARG PHE ALA ALA GLU SEQRES 11 B 276 PRO GLY LEU ILE LEU LEU CYS GLY ARG TYR GLU ALA ILE SEQRES 12 B 276 ASP GLN ARG LEU ILE ASP ARG VAL VAL ASP GLU GLU VAL SEQRES 13 B 276 SER LEU GLY ASP PHE VAL LEU SER GLY GLY GLU LEU PRO SEQRES 14 B 276 ALA MET ALA LEU ILE ASP ALA VAL VAL ARG HIS LEU PRO SEQRES 15 B 276 GLY VAL LEU ASN ASP ALA GLN SER ALA VAL GLN ASP SER SEQRES 16 B 276 PHE VAL ASP GLY LEU LEU ASP CYS PRO HIS TYR THR ARG SEQRES 17 B 276 PRO GLU GLU TYR ASP GLY VAL ARG VAL PRO ASP VAL LEU SEQRES 18 B 276 LEU GLY GLY HIS HIS ALA GLU ILE GLU GLN TRP ARG ARG SEQRES 19 B 276 ARG GLU ALA LEU ARG ASN THR TRP LEU LYS ARG PRO ASP SEQRES 20 B 276 LEU ILE VAL GLN ALA ARG LYS ASN LYS LEU LEU SER ARG SEQRES 21 B 276 ALA ASP GLU ALA TRP LEU ALA SER LEU ALA LYS ASP ALA SEQRES 22 B 276 SER LYS HIS HET SAH A 301 26 HET CL A 302 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CL CHLORIDE ION FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 CL CL 1- FORMUL 5 HOH *76(H2 O) HELIX 1 1 PHE A 9 MET A 12 5 4 HELIX 2 2 PHE A 13 ASP A 18 1 6 HELIX 3 3 TRP A 19 GLN A 28 1 10 HELIX 4 4 ASN A 37 THR A 42 5 6 HELIX 5 5 LEU A 63 GLU A 80 1 18 HELIX 6 6 ASN A 99 GLU A 109 1 11 HELIX 7 7 ASP A 123 VAL A 131 1 9 HELIX 8 8 GLY A 145 ARG A 158 1 14 HELIX 9 9 ASP A 166 SER A 174 1 9 HELIX 10 10 PRO A 197 GLY A 202 1 6 HELIX 11 11 ALA A 206 ARG A 224 1 19 HELIX 12 12 ARG A 224 ASN A 234 1 11 HELIX 13 13 SER A 238 LYS A 254 1 17 HELIX 14 14 PHE B 9 MET B 12 5 4 HELIX 15 15 PHE B 13 ASP B 18 1 6 HELIX 16 16 GLY B 20 GLN B 28 1 9 HELIX 17 17 ASN B 37 THR B 42 5 6 HELIX 18 18 LEU B 63 GLU B 80 1 18 HELIX 19 19 ASN B 99 ALA B 108 1 10 HELIX 20 20 ASP B 123 VAL B 131 1 9 HELIX 21 21 GLY B 145 ARG B 158 1 14 HELIX 22 22 ASN B 165 VAL B 171 1 7 HELIX 23 23 PRO B 197 GLY B 202 1 6 HELIX 24 24 HIS B 204 ARG B 224 1 21 HELIX 25 25 ARG B 224 ASN B 234 1 11 HELIX 26 26 SER B 238 SER B 253 1 16 SHEET 1 A 6 TYR A 31 TRP A 36 0 SHEET 2 A 6 MET A 1 VAL A 6 1 N ILE A 5 O ARG A 34 SHEET 3 A 6 GLY A 111 LEU A 115 1 O LEU A 114 N VAL A 6 SHEET 4 A 6 ARG A 87 MET A 91 1 N VAL A 89 O ILE A 113 SHEET 5 A 6 GLU A 133 SER A 136 1 O GLU A 133 N MET A 90 SHEET 6 A 6 ALA A 96 THR A 97 1 N ALA A 96 O SER A 136 SHEET 1 B 3 ASP A 50 ASP A 51 0 SHEET 2 B 3 VAL A 61 MET A 62 -1 O VAL A 61 N ASP A 51 SHEET 3 B 3 ALA A 121 ILE A 122 1 O ALA A 121 N MET A 62 SHEET 1 C 2 GLU A 190 TYR A 191 0 SHEET 2 C 2 VAL A 194 ARG A 195 -1 O VAL A 194 N TYR A 191 SHEET 1 D 6 TYR B 31 TRP B 36 0 SHEET 2 D 6 MET B 1 VAL B 6 1 N ILE B 5 O ARG B 34 SHEET 3 D 6 GLY B 111 CYS B 116 1 O LEU B 114 N VAL B 6 SHEET 4 D 6 VAL B 88 MET B 91 1 N VAL B 89 O ILE B 113 SHEET 5 D 6 GLU B 133 SER B 136 1 O GLU B 133 N MET B 90 SHEET 6 D 6 ALA B 96 THR B 97 1 N ALA B 96 O SER B 136 SHEET 1 E 3 ASP B 50 ASP B 51 0 SHEET 2 E 3 VAL B 61 MET B 62 -1 O VAL B 61 N ASP B 51 SHEET 3 E 3 ALA B 121 ILE B 122 1 O ALA B 121 N MET B 62 SHEET 1 F 2 GLU B 190 TYR B 191 0 SHEET 2 F 2 VAL B 194 ARG B 195 -1 O VAL B 194 N TYR B 191 CISPEP 1 ARG A 187 PRO A 188 0 9.82 CISPEP 2 ARG B 187 PRO B 188 0 6.88 SITE 1 AC1 19 MET A 91 SER A 92 PRO A 93 GLY A 117 SITE 2 AC1 19 TYR A 119 GLU A 120 VAL A 135 SER A 136 SITE 3 AC1 19 LEU A 137 GLY A 138 PHE A 140 LEU A 142 SITE 4 AC1 19 SER A 143 GLY A 144 GLY A 145 PRO A 148 SITE 5 AC1 19 HOH A 416 ASP B 173 SER B 174 SITE 1 AC2 3 HIS A 100 HIS A 159 VAL B 141 CRYST1 58.970 187.400 127.640 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007835 0.00000