HEADER TRANSFERASE 14-SEP-12 4H3Z TITLE CRYSTAL STRUCTURE OF A SYMMETRIC DIMER OF A TRNA (GUANINE-(N(1)-)- TITLE 2 METHYLTRANSFERASE FROM BURKHOLDERIA PHYMATUM BOUND TO S-ADENOSYL TITLE 3 HOMOCYSTEIN IN BOTH HALF-SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PHYMATUM; SOURCE 3 ORGANISM_TAXID: 391038; SOURCE 4 STRAIN: DSM 17167 STM815; SOURCE 5 GENE: BPHY_0771, TRMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRNA METHYLATION, M1G37 METHYLATION, KEYWDS 4 TRANSFERASE, SAH, SAM, FOOD PARASITE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4H3Z 1 REMARK SEQADV REVDAT 2 30-OCT-13 4H3Z 1 JRNL REVDAT 1 03-OCT-12 4H3Z 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4023 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3773 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5476 ; 1.467 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8620 ; 0.798 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 5.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;31.537 ;23.032 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;12.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4612 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 929 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 254 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7689 -29.6793 -15.1554 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0817 REMARK 3 T33: 0.0657 T12: 0.0500 REMARK 3 T13: -0.0361 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.1446 L22: 0.7035 REMARK 3 L33: 0.2720 L12: -0.2625 REMARK 3 L13: -0.1061 L23: 0.1395 REMARK 3 S TENSOR REMARK 3 S11: 0.1063 S12: 0.0515 S13: -0.0607 REMARK 3 S21: -0.1899 S22: -0.1463 S23: 0.0493 REMARK 3 S31: -0.0729 S32: -0.0568 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 254 REMARK 3 RESIDUE RANGE : A 303 A 303 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9233 -27.0763 -10.5595 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0502 REMARK 3 T33: 0.0823 T12: -0.0113 REMARK 3 T13: 0.0309 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.4781 L22: 1.3472 REMARK 3 L33: 0.4682 L12: -0.6568 REMARK 3 L13: -0.0162 L23: 0.4274 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: 0.0596 S13: 0.0984 REMARK 3 S21: -0.1301 S22: -0.0832 S23: -0.0572 REMARK 3 S31: -0.0740 S32: 0.0624 S33: 0.0211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4H3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4H3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPHA.00054.A.A1 PS01368 AT 35 MG/ML REMARK 280 WITH 3 MM SAH AGAINST CSHT SCREEN CONDITION E10, 0.2 M NACL, 0.1 REMARK 280 M NAOAC PH 4.6, 30% MPD, CRYSTAL TRACKING ID 236894E10, UNIQUE REMARK 280 PUCK ID ZEH2-4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.04500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.04500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.84000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.04500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.84000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 94.04500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 GLN A 168 REMARK 465 SER A 169 REMARK 465 ALA A 170 REMARK 465 VAL A 171 REMARK 465 HIS A 255 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 HIS B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LEU A 236 CG CD1 CD2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN B 168 CG CD OE1 NE2 REMARK 470 GLN B 172 CG CD OE1 NE2 REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 119 -151.23 64.15 REMARK 500 PHE A 175 -31.85 75.94 REMARK 500 TYR B 119 -155.08 59.68 REMARK 500 ASP B 173 162.63 -45.05 REMARK 500 PHE B 175 -18.03 83.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H3Y RELATED DB: PDB REMARK 900 ASYMMETRIC DIMER WITH APO/SAH HALF-SITES REMARK 900 RELATED ID: BUPHA.00054.A RELATED DB: TARGETTRACK DBREF 4H3Z A 1 255 UNP B2JF31 TRMD_BURP8 1 255 DBREF 4H3Z B 1 255 UNP B2JF31 TRMD_BURP8 1 255 SEQADV 4H3Z MET A -20 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z ALA A -19 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -18 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -17 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -16 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -15 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -14 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS A -13 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z MET A -12 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY A -11 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z THR A -10 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z LEU A -9 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLU A -8 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z ALA A -7 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLN A -6 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z THR A -5 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLN A -4 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY A -3 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z PRO A -2 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY A -1 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z SER A 0 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z MET B -20 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z ALA B -19 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -18 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -17 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -16 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -15 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -14 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z HIS B -13 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z MET B -12 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY B -11 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z THR B -10 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z LEU B -9 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLU B -8 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z ALA B -7 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLN B -6 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z THR B -5 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLN B -4 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY B -3 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z PRO B -2 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z GLY B -1 UNP B2JF31 EXPRESSION TAG SEQADV 4H3Z SER B 0 UNP B2JF31 EXPRESSION TAG SEQRES 1 A 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 276 ALA GLN THR GLN GLY PRO GLY SER MET GLN PHE ASP ILE SEQRES 3 A 276 VAL THR LEU PHE PRO ASP MET PHE ARG ALA LEU THR ASP SEQRES 4 A 276 TRP GLY ILE THR SER ARG ALA ALA LYS GLN GLU ARG TYR SEQRES 5 A 276 GLY LEU ARG THR TRP ASN PRO ARG ASP PHE THR THR ASP SEQRES 6 A 276 ASN TYR ARG THR ILE ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 7 A 276 PRO GLY MET VAL MET LEU ALA ARG PRO LEU GLU ASP ALA SEQRES 8 A 276 ILE ASN ALA ALA LYS ALA ALA GLN ALA GLU GLN GLY ILE SEQRES 9 A 276 GLY GLY ALA ARG VAL VAL MET MET SER PRO GLN GLY ALA SEQRES 10 A 276 THR LEU ASN HIS ASP LYS VAL MET ARG PHE ALA ALA GLU SEQRES 11 A 276 PRO GLY LEU ILE LEU LEU CYS GLY ARG TYR GLU ALA ILE SEQRES 12 A 276 ASP GLN ARG LEU ILE ASP ARG VAL VAL ASP GLU GLU VAL SEQRES 13 A 276 SER LEU GLY ASP PHE VAL LEU SER GLY GLY GLU LEU PRO SEQRES 14 A 276 ALA MET ALA LEU ILE ASP ALA VAL VAL ARG HIS LEU PRO SEQRES 15 A 276 GLY VAL LEU ASN ASP ALA GLN SER ALA VAL GLN ASP SER SEQRES 16 A 276 PHE VAL ASP GLY LEU LEU ASP CYS PRO HIS TYR THR ARG SEQRES 17 A 276 PRO GLU GLU TYR ASP GLY VAL ARG VAL PRO ASP VAL LEU SEQRES 18 A 276 LEU GLY GLY HIS HIS ALA GLU ILE GLU GLN TRP ARG ARG SEQRES 19 A 276 ARG GLU ALA LEU ARG ASN THR TRP LEU LYS ARG PRO ASP SEQRES 20 A 276 LEU ILE VAL GLN ALA ARG LYS ASN LYS LEU LEU SER ARG SEQRES 21 A 276 ALA ASP GLU ALA TRP LEU ALA SER LEU ALA LYS ASP ALA SEQRES 22 A 276 SER LYS HIS SEQRES 1 B 276 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 276 ALA GLN THR GLN GLY PRO GLY SER MET GLN PHE ASP ILE SEQRES 3 B 276 VAL THR LEU PHE PRO ASP MET PHE ARG ALA LEU THR ASP SEQRES 4 B 276 TRP GLY ILE THR SER ARG ALA ALA LYS GLN GLU ARG TYR SEQRES 5 B 276 GLY LEU ARG THR TRP ASN PRO ARG ASP PHE THR THR ASP SEQRES 6 B 276 ASN TYR ARG THR ILE ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 7 B 276 PRO GLY MET VAL MET LEU ALA ARG PRO LEU GLU ASP ALA SEQRES 8 B 276 ILE ASN ALA ALA LYS ALA ALA GLN ALA GLU GLN GLY ILE SEQRES 9 B 276 GLY GLY ALA ARG VAL VAL MET MET SER PRO GLN GLY ALA SEQRES 10 B 276 THR LEU ASN HIS ASP LYS VAL MET ARG PHE ALA ALA GLU SEQRES 11 B 276 PRO GLY LEU ILE LEU LEU CYS GLY ARG TYR GLU ALA ILE SEQRES 12 B 276 ASP GLN ARG LEU ILE ASP ARG VAL VAL ASP GLU GLU VAL SEQRES 13 B 276 SER LEU GLY ASP PHE VAL LEU SER GLY GLY GLU LEU PRO SEQRES 14 B 276 ALA MET ALA LEU ILE ASP ALA VAL VAL ARG HIS LEU PRO SEQRES 15 B 276 GLY VAL LEU ASN ASP ALA GLN SER ALA VAL GLN ASP SER SEQRES 16 B 276 PHE VAL ASP GLY LEU LEU ASP CYS PRO HIS TYR THR ARG SEQRES 17 B 276 PRO GLU GLU TYR ASP GLY VAL ARG VAL PRO ASP VAL LEU SEQRES 18 B 276 LEU GLY GLY HIS HIS ALA GLU ILE GLU GLN TRP ARG ARG SEQRES 19 B 276 ARG GLU ALA LEU ARG ASN THR TRP LEU LYS ARG PRO ASP SEQRES 20 B 276 LEU ILE VAL GLN ALA ARG LYS ASN LYS LEU LEU SER ARG SEQRES 21 B 276 ALA ASP GLU ALA TRP LEU ALA SER LEU ALA LYS ASP ALA SEQRES 22 B 276 SER LYS HIS HET SAH A 301 26 HET CL A 302 1 HET CL A 303 1 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CL CHLORIDE ION FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *223(H2 O) HELIX 1 1 PHE A 9 MET A 12 5 4 HELIX 2 2 PHE A 13 ASP A 18 1 6 HELIX 3 3 TRP A 19 GLN A 28 1 10 HELIX 4 4 ASN A 37 THR A 42 5 6 HELIX 5 5 LEU A 63 GLN A 81 1 19 HELIX 6 6 ASN A 99 ALA A 108 1 10 HELIX 7 7 ASP A 123 VAL A 131 1 9 HELIX 8 8 GLY A 145 HIS A 159 1 15 HELIX 9 9 PRO A 197 GLY A 202 1 6 HELIX 10 10 HIS A 204 ARG A 224 1 21 HELIX 11 11 ARG A 224 ASN A 234 1 11 HELIX 12 12 SER A 238 LYS A 254 1 17 HELIX 13 13 PHE B 9 MET B 12 5 4 HELIX 14 14 PHE B 13 ASP B 18 1 6 HELIX 15 15 TRP B 19 GLN B 28 1 10 HELIX 16 16 ASN B 37 PHE B 41 5 5 HELIX 17 17 LEU B 63 GLN B 81 1 19 HELIX 18 18 ASN B 99 ALA B 108 1 10 HELIX 19 19 ASP B 123 VAL B 131 1 9 HELIX 20 20 GLY B 145 ARG B 158 1 14 HELIX 21 21 ASN B 165 VAL B 171 1 7 HELIX 22 22 PRO B 197 LEU B 201 5 5 HELIX 23 23 HIS B 204 ARG B 224 1 21 HELIX 24 24 ARG B 224 ASN B 234 1 11 HELIX 25 25 SER B 238 LYS B 254 1 17 SHEET 1 A 6 TYR A 31 TRP A 36 0 SHEET 2 A 6 MET A 1 VAL A 6 1 N MET A 1 O GLY A 32 SHEET 3 A 6 GLY A 111 LEU A 115 1 O LEU A 114 N VAL A 6 SHEET 4 A 6 ARG A 87 MET A 91 1 N VAL A 89 O ILE A 113 SHEET 5 A 6 GLU A 133 SER A 136 1 O GLU A 133 N MET A 90 SHEET 6 A 6 ALA A 96 THR A 97 1 N ALA A 96 O SER A 136 SHEET 1 B 3 ASP A 50 ASP A 51 0 SHEET 2 B 3 VAL A 61 MET A 62 -1 O VAL A 61 N ASP A 51 SHEET 3 B 3 ALA A 121 ILE A 122 1 O ALA A 121 N MET A 62 SHEET 1 C 2 GLU A 190 TYR A 191 0 SHEET 2 C 2 VAL A 194 ARG A 195 -1 O VAL A 194 N TYR A 191 SHEET 1 D 6 TYR B 31 TRP B 36 0 SHEET 2 D 6 MET B 1 VAL B 6 1 N PHE B 3 O GLY B 32 SHEET 3 D 6 GLY B 111 LEU B 115 1 O LEU B 114 N VAL B 6 SHEET 4 D 6 ARG B 87 MET B 91 1 N VAL B 89 O ILE B 113 SHEET 5 D 6 GLU B 133 SER B 136 1 O GLU B 133 N MET B 90 SHEET 6 D 6 ALA B 96 THR B 97 1 N ALA B 96 O SER B 136 SHEET 1 E 3 ASP B 50 ASP B 51 0 SHEET 2 E 3 VAL B 61 MET B 62 -1 O VAL B 61 N ASP B 51 SHEET 3 E 3 ALA B 121 ILE B 122 1 O ALA B 121 N MET B 62 SHEET 1 F 2 GLU B 190 TYR B 191 0 SHEET 2 F 2 VAL B 194 ARG B 195 -1 O VAL B 194 N TYR B 191 CISPEP 1 ARG A 187 PRO A 188 0 5.24 CISPEP 2 ARG B 187 PRO B 188 0 5.54 SITE 1 AC1 22 MET A 91 SER A 92 PRO A 93 GLY A 117 SITE 2 AC1 22 TYR A 119 GLU A 120 VAL A 135 SER A 136 SITE 3 AC1 22 LEU A 137 GLY A 138 PHE A 140 LEU A 142 SITE 4 AC1 22 GLY A 144 GLY A 145 PRO A 148 HOH A 414 SITE 5 AC1 22 HOH A 445 HOH A 467 ASP B 173 SER B 174 SITE 6 AC1 22 ASP B 181 HOH B 468 SITE 1 AC2 4 HIS A 100 HIS A 159 PHE B 140 VAL B 141 SITE 1 AC3 4 PHE A 140 VAL A 141 HIS B 100 HIS B 159 SITE 1 AC4 20 ASP A 173 SER A 174 ASP A 181 MET B 91 SITE 2 AC4 20 SER B 92 PRO B 93 GLY B 117 TYR B 119 SITE 3 AC4 20 GLU B 120 VAL B 135 SER B 136 LEU B 137 SITE 4 AC4 20 GLY B 138 PHE B 140 LEU B 142 GLY B 144 SITE 5 AC4 20 GLY B 145 PRO B 148 HOH B 442 HOH B 444 CRYST1 58.850 188.090 127.680 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007832 0.00000