HEADER CELL ADHESION 14-SEP-12 4H40 TITLE CRYSTAL STRUCTURE OF A PUTATIVE CELL ADHESION PROTEIN (BF2867) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 2.57 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CELL ADHESION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 GENE: BF2867, BF9343_2780, YP_212481.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FIMBRIAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, CELL KEYWDS 3 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4H40 1 REMARK SEQADV REVDAT 4 22-APR-20 4H40 1 JRNL LINK REVDAT 3 24-JAN-18 4H40 1 JRNL REVDAT 2 15-NOV-17 4H40 1 REMARK REVDAT 1 03-OCT-12 4H40 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 22160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2937 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2368 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2789 REMARK 3 BIN R VALUE (WORKING SET) : 0.2343 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.15390 REMARK 3 B22 (A**2) : -13.51560 REMARK 3 B33 (A**2) : 5.36170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45640 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.394 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4657 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6364 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2099 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 112 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 681 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4657 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 645 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5028 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|34 - 345} REMARK 3 ORIGIN FOR THE GROUP (A): -22.5519 12.2102 15.2978 REMARK 3 T TENSOR REMARK 3 T11: -0.1781 T22: 0.0566 REMARK 3 T33: -0.2958 T12: -0.0169 REMARK 3 T13: 0.0331 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 3.4751 L22: 1.8860 REMARK 3 L33: 2.3706 L12: -0.5291 REMARK 3 L13: 0.2435 L23: 0.1724 REMARK 3 S TENSOR REMARK 3 S11: 0.2061 S12: -0.4998 S13: 0.2824 REMARK 3 S21: -0.1471 S22: -0.1893 S23: 0.1723 REMARK 3 S31: 0.1173 S32: -0.2800 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|33 - 345} REMARK 3 ORIGIN FOR THE GROUP (A): 22.9424 -5.2939 15.5130 REMARK 3 T TENSOR REMARK 3 T11: -0.2305 T22: -0.0894 REMARK 3 T33: -0.2279 T12: -0.0289 REMARK 3 T13: -0.0390 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.6171 L22: 4.9921 REMARK 3 L33: 1.2703 L12: -1.0364 REMARK 3 L13: -0.1496 L23: -0.4150 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: -0.4502 S13: -0.2668 REMARK 3 S21: -0.0243 S22: 0.3169 S23: -0.4620 REMARK 3 S31: 0.2029 S32: 0.0254 S33: -0.1953 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. CL MODELED ARE PRESENT IN PROTEIN CONDITIONS. 4. THE REMARK 3 MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 5. NCS REMARK 3 RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REMARK 3 REPRESENTATION (-AUTONCS) REMARK 4 REMARK 4 4H40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795,0.9797,0.9116 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 45.664 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M MAGNESIUM ACETATE, 18.0% REMARK 280 POLYETHYLENE GLYCOL 8000, 0.1M SODIUM CACODYLATE PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.81900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.21050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.81900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 66.21050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 GLU A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 MSE A 31 REMARK 465 GLU A 32 REMARK 465 ASP A 33 REMARK 465 ALA A 52 REMARK 465 GLN A 53 REMARK 465 THR A 54 REMARK 465 LYS A 180 REMARK 465 ILE A 181 REMARK 465 ASP A 182 REMARK 465 GLU A 183 REMARK 465 GLY A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 LEU A 187 REMARK 465 ASN A 188 REMARK 465 MSE A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 GLY B 0 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 PRO B 27 REMARK 465 GLU B 28 REMARK 465 GLU B 29 REMARK 465 ASP B 30 REMARK 465 MSE B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 180 REMARK 465 ILE B 181 REMARK 465 ASP B 182 REMARK 465 GLU B 183 REMARK 465 GLY B 184 REMARK 465 GLY B 185 REMARK 465 THR B 186 REMARK 465 LEU B 187 REMARK 465 ASN B 188 REMARK 465 MSE B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ASN A 189 CG OD1 ND2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 THR A 237 OG1 CG2 REMARK 470 THR A 238 OG1 CG2 REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 33 CG OD1 OD2 REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 THR B 58 OG1 CG2 REMARK 470 THR B 104 OG1 CG2 REMARK 470 ASN B 189 CG OD1 ND2 REMARK 470 LEU B 234 CG CD1 CD2 REMARK 470 THR B 237 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 53.65 -164.89 REMARK 500 LEU A 90 79.21 -117.67 REMARK 500 THR A 104 -9.74 -55.10 REMARK 500 PHE A 152 -160.12 -109.02 REMARK 500 ASP A 241 78.01 -118.20 REMARK 500 ALA A 283 40.79 -109.11 REMARK 500 ASN A 328 -77.05 -132.85 REMARK 500 SER B 51 138.24 -174.08 REMARK 500 ALA B 52 120.66 -37.59 REMARK 500 ARG B 55 20.84 -78.84 REMARK 500 LEU B 90 79.26 -117.69 REMARK 500 SER B 125 121.38 -22.99 REMARK 500 PHE B 152 -160.62 -109.17 REMARK 500 ASP B 241 76.20 -100.86 REMARK 500 VAL B 250 69.02 -103.21 REMARK 500 GLN B 255 -30.23 -34.39 REMARK 500 ASN B 328 -77.80 -135.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-390149 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (23-348) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4H40 A 23 348 UNP Q5LBF9 Q5LBF9_BACFN 23 348 DBREF 4H40 B 23 348 UNP Q5LBF9 Q5LBF9_BACFN 23 348 SEQADV 4H40 GLY A 0 UNP Q5LBF9 EXPRESSION TAG SEQADV 4H40 GLY B 0 UNP Q5LBF9 EXPRESSION TAG SEQRES 1 A 327 GLY ALA ALA GLY SER PRO GLU GLU ASP MSE GLU ASP ARG SEQRES 2 A 327 VAL ARG ILE ASP PRO VAL ALA GLY GLY TYR TYR PRO SER SEQRES 3 A 327 ILE SER PRO SER ALA GLN THR ARG GLY ALA THR PRO ASP SEQRES 4 A 327 GLY GLU THR LEU LYS ASP ARG PRO ILE PHE LEU LEU GLU SEQRES 5 A 327 ASP GLY SER THR ILE ARG LEU VAL VAL TYR ASP ASP ALA SEQRES 6 A 327 LYS ASN LEU LEU GLU GLU TYR SER LYS ALA TYR LEU VAL SEQRES 7 A 327 ARG ASN ALA GLY THR SER GLY SER SER LEU LEU TYR PRO SEQRES 8 A 327 CYS GLU VAL ASP ASP ASN GLY ALA VAL ILE SER SER SER SEQRES 9 A 327 SER THR PRO LEU TYR MSE LYS ALA GLY THR TYR TYR PHE SEQRES 10 A 327 ARG ILE LEU SER PRO ALA LYS ALA LEU ASN SER LYS GLY SEQRES 11 A 327 PHE VAL ASN ILE GLY ASN GLY GLU TYR LEU LEU ALA THR SEQRES 12 A 327 ASP ASP ARG TYR THR GLN THR ALA MSE THR ALA VAL THR SEQRES 13 A 327 ILE THR LYS ILE ASP GLU GLY GLY THR LEU ASN ASN VAL SEQRES 14 A 327 GLN THR LEU TYR LEU PRO PRO ILE ILE ASN GLN THR ALA SEQRES 15 A 327 ARG MSE GLN PHE THR VAL ARG ALA GLY GLU GLY VAL HIS SEQRES 16 A 327 THR LEU GLU MSE LEU ALA GLU GLY ILE GLU ILE SER GLY SEQRES 17 A 327 ILE GLN GLN PRO LEU ASP ASN THR THR SER PHE ASP TRP SEQRES 18 A 327 VAL ASN GLY ASP VAL LEU PRO VAL LYS VAL GLY ASP GLN SEQRES 19 A 327 SER ALA SER VAL ARG ILE THR GLN ALA THR ARG ASN ALA SEQRES 20 A 327 ASP ASN SER LEU VAL ALA HIS THR GLY VAL LEU PRO THR SEQRES 21 A 327 ASP ALA ARG SER HIS SER ILE SER VAL LEU LEU ASN LEU SEQRES 22 A 327 LYS VAL ASN GLY ASN PRO THR GLN TYR GLN MSE LEU LEU SEQRES 23 A 327 THR GLY LEU TYR LEU THR ALA GLY HIS SER TYR ASN TYR SEQRES 24 A 327 THR ALA THR VAL LYS ILE SER ASN GLY VAL THR VAL LEU SEQRES 25 A 327 THR TRP GLN ASN ARG SER TRP THR GLU ASN VAL VAL MSE SEQRES 26 A 327 ASP LYS SEQRES 1 B 327 GLY ALA ALA GLY SER PRO GLU GLU ASP MSE GLU ASP ARG SEQRES 2 B 327 VAL ARG ILE ASP PRO VAL ALA GLY GLY TYR TYR PRO SER SEQRES 3 B 327 ILE SER PRO SER ALA GLN THR ARG GLY ALA THR PRO ASP SEQRES 4 B 327 GLY GLU THR LEU LYS ASP ARG PRO ILE PHE LEU LEU GLU SEQRES 5 B 327 ASP GLY SER THR ILE ARG LEU VAL VAL TYR ASP ASP ALA SEQRES 6 B 327 LYS ASN LEU LEU GLU GLU TYR SER LYS ALA TYR LEU VAL SEQRES 7 B 327 ARG ASN ALA GLY THR SER GLY SER SER LEU LEU TYR PRO SEQRES 8 B 327 CYS GLU VAL ASP ASP ASN GLY ALA VAL ILE SER SER SER SEQRES 9 B 327 SER THR PRO LEU TYR MSE LYS ALA GLY THR TYR TYR PHE SEQRES 10 B 327 ARG ILE LEU SER PRO ALA LYS ALA LEU ASN SER LYS GLY SEQRES 11 B 327 PHE VAL ASN ILE GLY ASN GLY GLU TYR LEU LEU ALA THR SEQRES 12 B 327 ASP ASP ARG TYR THR GLN THR ALA MSE THR ALA VAL THR SEQRES 13 B 327 ILE THR LYS ILE ASP GLU GLY GLY THR LEU ASN ASN VAL SEQRES 14 B 327 GLN THR LEU TYR LEU PRO PRO ILE ILE ASN GLN THR ALA SEQRES 15 B 327 ARG MSE GLN PHE THR VAL ARG ALA GLY GLU GLY VAL HIS SEQRES 16 B 327 THR LEU GLU MSE LEU ALA GLU GLY ILE GLU ILE SER GLY SEQRES 17 B 327 ILE GLN GLN PRO LEU ASP ASN THR THR SER PHE ASP TRP SEQRES 18 B 327 VAL ASN GLY ASP VAL LEU PRO VAL LYS VAL GLY ASP GLN SEQRES 19 B 327 SER ALA SER VAL ARG ILE THR GLN ALA THR ARG ASN ALA SEQRES 20 B 327 ASP ASN SER LEU VAL ALA HIS THR GLY VAL LEU PRO THR SEQRES 21 B 327 ASP ALA ARG SER HIS SER ILE SER VAL LEU LEU ASN LEU SEQRES 22 B 327 LYS VAL ASN GLY ASN PRO THR GLN TYR GLN MSE LEU LEU SEQRES 23 B 327 THR GLY LEU TYR LEU THR ALA GLY HIS SER TYR ASN TYR SEQRES 24 B 327 THR ALA THR VAL LYS ILE SER ASN GLY VAL THR VAL LEU SEQRES 25 B 327 THR TRP GLN ASN ARG SER TRP THR GLU ASN VAL VAL MSE SEQRES 26 B 327 ASP LYS MODRES 4H40 MSE A 131 MET SELENOMETHIONINE MODRES 4H40 MSE A 173 MET SELENOMETHIONINE MODRES 4H40 MSE A 205 MET SELENOMETHIONINE MODRES 4H40 MSE A 220 MET SELENOMETHIONINE MODRES 4H40 MSE A 305 MET SELENOMETHIONINE MODRES 4H40 MSE B 131 MET SELENOMETHIONINE MODRES 4H40 MSE B 173 MET SELENOMETHIONINE MODRES 4H40 MSE B 205 MET SELENOMETHIONINE MODRES 4H40 MSE B 220 MET SELENOMETHIONINE MODRES 4H40 MSE B 305 MET SELENOMETHIONINE HET MSE A 131 8 HET MSE A 173 8 HET MSE A 205 8 HET MSE A 220 8 HET MSE A 305 8 HET MSE B 131 8 HET MSE B 173 8 HET MSE B 205 8 HET MSE B 220 8 HET MSE B 305 8 HET CL A 401 1 HET CL A 402 1 HET CL B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *180(H2 O) HELIX 1 1 LEU A 90 SER A 94 5 5 HELIX 2 2 ASP A 241 GLY A 245 5 5 HELIX 3 3 LEU B 90 SER B 94 5 5 HELIX 4 4 GLY B 103 SER B 107 5 5 HELIX 5 5 ASP B 241 GLY B 245 5 5 SHEET 1 A 3 LEU A 129 MSE A 131 0 SHEET 2 A 3 VAL A 35 VAL A 40 -1 N ILE A 37 O LEU A 129 SHEET 3 A 3 VAL A 190 TYR A 194 1 O LEU A 193 N VAL A 40 SHEET 1 B 8 TYR A 44 TYR A 45 0 SHEET 2 B 8 ILE A 198 ASN A 200 1 O ILE A 198 N TYR A 45 SHEET 3 B 8 LEU A 162 ALA A 163 -1 N ALA A 163 O ILE A 199 SHEET 4 B 8 GLY A 134 SER A 142 -1 N SER A 142 O LEU A 162 SHEET 5 B 8 THR A 77 TYR A 83 -1 N ARG A 79 O LEU A 141 SHEET 6 B 8 LYS A 95 ARG A 100 -1 O LYS A 95 N LEU A 80 SHEET 7 B 8 LEU A 109 VAL A 115 -1 O TYR A 111 N LEU A 98 SHEET 8 B 8 VAL A 121 SER A 123 -1 O SER A 123 N GLU A 114 SHEET 1 C 5 TYR A 44 TYR A 45 0 SHEET 2 C 5 ILE A 198 ASN A 200 1 O ILE A 198 N TYR A 45 SHEET 3 C 5 LEU A 162 ALA A 163 -1 N ALA A 163 O ILE A 199 SHEET 4 C 5 GLY A 134 SER A 142 -1 N SER A 142 O LEU A 162 SHEET 5 C 5 THR A 174 ILE A 178 -1 O ILE A 178 N GLY A 134 SHEET 1 D10 THR A 265 ARG A 266 0 SHEET 2 D10 LEU A 272 VAL A 278 -1 O VAL A 273 N THR A 265 SHEET 3 D10 ALA A 203 ALA A 211 -1 N ALA A 203 O VAL A 278 SHEET 4 D10 SER A 317 ILE A 326 1 O ALA A 322 N ARG A 210 SHEET 5 D10 THR A 331 GLU A 342 -1 O VAL A 332 N LYS A 325 SHEET 6 D10 THR B 331 GLU B 342 -1 O SER B 339 N TRP A 335 SHEET 7 D10 SER B 317 ILE B 326 -1 N LYS B 325 O VAL B 332 SHEET 8 D10 ALA B 203 ALA B 211 1 N THR B 208 O ALA B 322 SHEET 9 D10 LEU B 272 VAL B 278 -1 O ALA B 274 N PHE B 207 SHEET 10 D10 THR B 265 ARG B 266 -1 N THR B 265 O VAL B 273 SHEET 1 E 4 SER A 258 ILE A 261 0 SHEET 2 E 4 LEU A 218 SER A 228 -1 N ILE A 225 O ILE A 261 SHEET 3 E 4 ILE A 288 VAL A 296 -1 O LEU A 291 N GLU A 226 SHEET 4 E 4 ASN A 299 LEU A 307 -1 O MSE A 305 N VAL A 290 SHEET 1 F 3 LYS A 251 VAL A 252 0 SHEET 2 F 3 THR A 281 ALA A 283 1 O ASP A 282 N LYS A 251 SHEET 3 F 3 LEU A 310 LEU A 312 -1 O LEU A 312 N THR A 281 SHEET 1 G 3 LEU B 129 MSE B 131 0 SHEET 2 G 3 VAL B 35 VAL B 40 -1 N ILE B 37 O LEU B 129 SHEET 3 G 3 VAL B 190 TYR B 194 1 O LEU B 193 N VAL B 40 SHEET 1 H 8 TYR B 44 TYR B 45 0 SHEET 2 H 8 ILE B 198 ASN B 200 1 O ILE B 198 N TYR B 45 SHEET 3 H 8 LEU B 162 ALA B 163 -1 N ALA B 163 O ILE B 199 SHEET 4 H 8 GLY B 134 SER B 142 -1 N SER B 142 O LEU B 162 SHEET 5 H 8 THR B 77 TYR B 83 -1 N VAL B 81 O ARG B 139 SHEET 6 H 8 LYS B 95 ARG B 100 -1 O LYS B 95 N LEU B 80 SHEET 7 H 8 LEU B 109 VAL B 115 -1 O TYR B 111 N LEU B 98 SHEET 8 H 8 VAL B 121 SER B 123 -1 O ILE B 122 N GLU B 114 SHEET 1 I 5 TYR B 44 TYR B 45 0 SHEET 2 I 5 ILE B 198 ASN B 200 1 O ILE B 198 N TYR B 45 SHEET 3 I 5 LEU B 162 ALA B 163 -1 N ALA B 163 O ILE B 199 SHEET 4 I 5 GLY B 134 SER B 142 -1 N SER B 142 O LEU B 162 SHEET 5 I 5 THR B 174 ILE B 178 -1 O ILE B 178 N GLY B 134 SHEET 1 J 4 LYS B 251 VAL B 252 0 SHEET 2 J 4 THR B 281 VAL B 296 1 O ASP B 282 N LYS B 251 SHEET 3 J 4 LEU B 218 SER B 228 -1 N GLU B 226 O LEU B 291 SHEET 4 J 4 SER B 258 ILE B 261 -1 O ILE B 261 N ILE B 225 SHEET 1 K 3 LYS B 251 VAL B 252 0 SHEET 2 K 3 THR B 281 VAL B 296 1 O ASP B 282 N LYS B 251 SHEET 3 K 3 ASN B 299 LEU B 312 -1 O THR B 301 N LEU B 294 LINK C TYR A 130 N MSE A 131 1555 1555 1.34 LINK C MSE A 131 N LYS A 132 1555 1555 1.35 LINK C ALA A 172 N MSE A 173 1555 1555 1.35 LINK C MSE A 173 N THR A 174 1555 1555 1.34 LINK C ARG A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N GLN A 206 1555 1555 1.33 LINK C GLU A 219 N MSE A 220 1555 1555 1.35 LINK C MSE A 220 N LEU A 221 1555 1555 1.33 LINK C GLN A 304 N MSE A 305 1555 1555 1.32 LINK C MSE A 305 N LEU A 306 1555 1555 1.31 LINK C TYR B 130 N MSE B 131 1555 1555 1.34 LINK C MSE B 131 N LYS B 132 1555 1555 1.36 LINK C ALA B 172 N MSE B 173 1555 1555 1.35 LINK C MSE B 173 N THR B 174 1555 1555 1.34 LINK C ARG B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N GLN B 206 1555 1555 1.34 LINK C GLU B 219 N MSE B 220 1555 1555 1.34 LINK C MSE B 220 N LEU B 221 1555 1555 1.33 LINK C GLN B 304 N MSE B 305 1555 1555 1.34 LINK C MSE B 305 N LEU B 306 1555 1555 1.37 CISPEP 1 THR A 58 PRO A 59 0 -4.40 CISPEP 2 SER A 142 PRO A 143 0 6.09 CISPEP 3 THR B 58 PRO B 59 0 2.81 CISPEP 4 SER B 142 PRO B 143 0 4.82 SITE 1 AC1 2 ARG A 67 TYR A 168 SITE 1 AC2 2 TYR A 160 HOH A 555 SITE 1 AC3 2 ARG B 67 HOH B 574 CRYST1 87.638 132.421 64.255 90.00 101.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011411 0.000000 0.002230 0.00000 SCALE2 0.000000 0.007552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015858 0.00000