HEADER OXIDOREDUCTASE 17-SEP-12 4H4I TITLE OYE1-W116V COMPLEXED WITH THE DISMUTATION PRODUCT OF (S)-CARVONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS CARVONE, DISMUTATION, ENANTIOSELECTIVITY, ENANTIOCOMPLEMENTARY, KEYWDS 2 FLIPPED BINDING, ALPHA/BETA BARREL, TIM BARREL, NAD(P)H KEYWDS 3 OXIDOREDUCTASE, NAD(P)H, FMN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 3 20-SEP-23 4H4I 1 REMARK SEQADV LINK REVDAT 2 06-NOV-13 4H4I 1 REMARK REVDAT 1 09-OCT-13 4H4I 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X-RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES CONTROL THE JRNL TITL 2 ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 116372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5558 - 3.8781 1.00 3860 430 0.1527 0.1621 REMARK 3 2 3.8781 - 3.0804 1.00 3701 411 0.1357 0.1481 REMARK 3 3 3.0804 - 2.6916 1.00 3662 407 0.1369 0.1503 REMARK 3 4 2.6916 - 2.4458 1.00 3643 405 0.1268 0.1502 REMARK 3 5 2.4458 - 2.2707 1.00 3588 399 0.1190 0.1347 REMARK 3 6 2.2707 - 2.1369 1.00 3585 398 0.1111 0.1306 REMARK 3 7 2.1369 - 2.0299 1.00 3618 402 0.1155 0.1367 REMARK 3 8 2.0299 - 1.9416 1.00 3550 395 0.1164 0.1277 REMARK 3 9 1.9416 - 1.8669 1.00 3568 394 0.1147 0.1360 REMARK 3 10 1.8669 - 1.8025 1.00 3576 399 0.1143 0.1456 REMARK 3 11 1.8025 - 1.7461 0.99 3560 396 0.1105 0.1318 REMARK 3 12 1.7461 - 1.6962 0.99 3534 391 0.1079 0.1391 REMARK 3 13 1.6962 - 1.6516 0.99 3487 387 0.1078 0.1283 REMARK 3 14 1.6516 - 1.6113 0.99 3539 395 0.1046 0.1386 REMARK 3 15 1.6113 - 1.5747 0.99 3484 388 0.1013 0.1318 REMARK 3 16 1.5747 - 1.5412 0.99 3498 389 0.1027 0.1445 REMARK 3 17 1.5412 - 1.5104 0.98 3514 390 0.1042 0.1326 REMARK 3 18 1.5104 - 1.4819 0.98 3440 386 0.1133 0.1587 REMARK 3 19 1.4819 - 1.4554 0.98 3460 384 0.1181 0.1424 REMARK 3 20 1.4554 - 1.4307 0.97 3429 379 0.1152 0.1520 REMARK 3 21 1.4307 - 1.4077 0.96 3407 385 0.1143 0.1576 REMARK 3 22 1.4077 - 1.3860 0.96 3386 375 0.1131 0.1507 REMARK 3 23 1.3860 - 1.3656 0.96 3392 380 0.1134 0.1508 REMARK 3 24 1.3656 - 1.3464 0.96 3388 375 0.1127 0.1400 REMARK 3 25 1.3464 - 1.3282 0.95 3361 366 0.1182 0.1649 REMARK 3 26 1.3282 - 1.3110 0.94 3347 377 0.1204 0.1616 REMARK 3 27 1.3110 - 1.2946 0.94 3276 362 0.1305 0.1696 REMARK 3 28 1.2946 - 1.2790 0.93 3312 364 0.1386 0.1729 REMARK 3 29 1.2790 - 1.2641 0.94 3300 357 0.1431 0.1699 REMARK 3 30 1.2641 - 1.2499 0.93 3274 367 0.1582 0.2044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3483 REMARK 3 ANGLE : 1.467 4732 REMARK 3 CHIRALITY : 0.139 484 REMARK 3 PLANARITY : 0.010 618 REMARK 3 DIHEDRAL : 16.763 1345 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : SI (111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119164 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 23.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 19.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91600 REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 35%PEG400, PH 8.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.40900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.50200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.50200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.11350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.50200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.50200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.70450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.50200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.50200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.11350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.50200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.50200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.70450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.40900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1043 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1046 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1051 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1086 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1144 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1150 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1154 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 167 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1083 O HOH A 1109 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1030 O HOH A 1055 4555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 322 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 371 CG - CD - NE ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 371 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 371 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 150.03 -43.46 REMARK 500 ASN A 156 55.45 -141.72 REMARK 500 ASP A 355 37.54 -99.87 REMARK 500 TYR A 375 52.92 -115.23 REMARK 500 TYR A 382 -60.81 -129.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 92 12.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 404 REMARK 610 1PE A 405 REMARK 610 1PE A 409 REMARK 610 1PE A 410 REMARK 610 1PE A 415 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 411 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE1 REMARK 620 2 GLU A 336 OE2 49.4 REMARK 620 3 HOH A1015 O 90.4 66.7 REMARK 620 4 HOH A1036 O 61.1 108.5 102.4 REMARK 620 5 HOH A1060 O 94.8 58.8 99.1 147.4 REMARK 620 6 HOH A1092 O 141.3 136.4 70.8 89.5 120.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1052 O REMARK 620 2 HOH A1088 O 95.6 REMARK 620 3 HOH A1089 O 84.4 76.7 REMARK 620 4 HOH A1123 O 94.2 92.1 168.5 REMARK 620 5 HOH A1124 O 99.3 159.1 90.2 101.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 409 OH5 REMARK 620 2 1PE A 409 OH4 56.3 REMARK 620 3 HOH A 916 O 71.7 99.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 404 OH4 REMARK 620 2 1PE A 404 OH3 60.3 REMARK 620 3 1PE A 404 OH5 53.9 106.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 417 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 405 OH6 REMARK 620 2 1PE A 405 OH4 104.0 REMARK 620 3 1PE A 405 OH3 122.1 65.1 REMARK 620 4 1PE A 405 OH5 58.2 53.7 112.7 REMARK 620 5 HOH A 611 O 108.8 120.8 125.9 108.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1017 O REMARK 620 2 HOH A1043 O 89.3 REMARK 620 3 HOH A1051 O 91.5 179.1 REMARK 620 4 HOH A1129 O 93.5 90.6 88.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 414 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 415 OH3 REMARK 620 2 1PE A 415 OH4 53.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB REMARK 900 RELATED ID: 3TXZ RELATED DB: PDB REMARK 900 RELATED ID: 4GBU RELATED DB: PDB REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 RELATED ID: 4GXM RELATED DB: PDB REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 RELATED ID: 4K7V RELATED DB: PDB REMARK 900 RELATED ID: 4K7Y RELATED DB: PDB REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 RELATED ID: 4K8H RELATED DB: PDB DBREF 4H4I A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4H4I VAL A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU VAL SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET MG A 401 1 HET 0WV A 402 11 HET NA A 403 1 HET 1PE A 404 12 HET 1PE A 405 14 HET MG A 406 1 HET NA A 407 1 HET NA A 408 1 HET 1PE A 409 12 HET 1PE A 410 10 HET MG A 411 1 HET FMN A 412 31 HET CL A 413 1 HET NA A 414 1 HET 1PE A 415 8 HET CL A 416 1 HET NA A 417 1 HETNAM MG MAGNESIUM ION HETNAM 0WV 2-METHYL-5-(PROP-1-EN-2-YL)PHENOL HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETSYN 1PE PEG400 HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 3 0WV C10 H12 O FORMUL 4 NA 5(NA 1+) FORMUL 5 1PE 5(C10 H22 O6) FORMUL 13 FMN C17 H21 N4 O9 P FORMUL 14 CL 2(CL 1-) FORMUL 19 HOH *660(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ALA A 154 1 11 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 VAL A 249 MET A 253 5 5 HELIX 13 13 SER A 254 GLU A 258 5 5 HELIX 14 14 GLY A 260 ALA A 278 1 19 HELIX 15 15 ASP A 310 TRP A 316 1 7 HELIX 16 16 HIS A 329 VAL A 337 1 9 HELIX 17 17 GLY A 347 ASN A 353 1 7 HELIX 18 18 ASP A 355 GLY A 363 1 9 HELIX 19 19 ASP A 370 PHE A 374 5 5 HELIX 20 20 THR A 387 LEU A 394 1 8 HELIX 21 21 GLY A 395 LYS A 399 5 5 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 B 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 8 PHE A 110 VAL A 116 1 N LEU A 115 O GLU A 189 SHEET 8 B 8 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 8 ALA A 31 VAL A 32 0 SHEET 2 C 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 C 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 8 PHE A 110 VAL A 116 1 N LEU A 115 O GLU A 189 SHEET 8 C 8 ALA A 73 PHE A 74 1 N ALA A 73 O VAL A 116 SHEET 1 D 2 ASP A 135 SER A 136 0 SHEET 2 D 2 HIS A 159 SER A 160 1 O HIS A 159 N SER A 136 LINK OE1AGLU A 336 MG A MG A 411 1555 1555 2.36 LINK OE2AGLU A 336 MG A MG A 411 1555 1555 2.76 LINK MG MG A 401 O HOH A1052 1555 1555 1.99 LINK MG MG A 401 O HOH A1088 1555 1555 2.44 LINK MG MG A 401 O HOH A1089 1555 1555 2.00 LINK MG MG A 401 O HOH A1123 1555 1555 1.93 LINK MG MG A 401 O HOH A1124 1555 1555 2.13 LINK NA NA A 403 OH5 1PE A 409 1555 1555 2.84 LINK NA NA A 403 OH4 1PE A 409 1555 1555 3.11 LINK NA NA A 403 O HOH A 916 1555 1555 2.95 LINK OH4 1PE A 404 NA NA A 408 1555 1555 2.85 LINK OH3 1PE A 404 NA NA A 408 1555 1555 3.01 LINK OH5 1PE A 404 NA NA A 408 1555 1555 3.09 LINK OH6 1PE A 405 NA NA A 417 1555 1555 2.75 LINK OH4 1PE A 405 NA NA A 417 1555 1555 2.90 LINK OH3 1PE A 405 NA NA A 417 1555 1555 3.04 LINK OH5 1PE A 405 NA NA A 417 1555 1555 3.10 LINK MG MG A 406 O HOH A1017 1555 1555 2.05 LINK MG MG A 406 O HOH A1043 1555 1555 2.08 LINK MG MG A 406 O HOH A1051 1555 1555 2.05 LINK MG MG A 406 O HOH A1129 1555 1555 2.06 LINK NA NA A 407 OH4 1PE A 410 1555 1555 3.10 LINK MG A MG A 411 O HOH A1015 1555 1555 1.95 LINK MG A MG A 411 O HOH A1036 1555 1555 1.95 LINK MG A MG A 411 O HOH A1060 1555 1555 2.69 LINK MG A MG A 411 O HOH A1092 1555 1555 2.04 LINK NA NA A 414 OH3 1PE A 415 1555 1555 3.04 LINK NA NA A 414 OH4 1PE A 415 1555 1555 3.12 LINK NA NA A 417 O HOH A 611 1555 1555 3.11 CISPEP 1 HIS A 43 PRO A 44 0 2.55 SITE 1 AC1 6 HOH A 914 HOH A1052 HOH A1088 HOH A1089 SITE 2 AC1 6 HOH A1123 HOH A1124 SITE 1 AC2 7 THR A 37 TYR A 82 HIS A 191 ASN A 194 SITE 2 AC2 7 TYR A 196 TYR A 375 FMN A 412 SITE 1 AC3 2 1PE A 409 HOH A 916 SITE 1 AC4 6 ASP A 51 TRP A 52 ASP A 358 GLU A 389 SITE 2 AC4 6 NA A 408 HOH A1126 SITE 1 AC5 10 GLU A 305 GLY A 307 SER A 308 ASP A 310 SITE 2 AC5 10 TYR A 313 ARG A 322 ASP A 339 NA A 417 SITE 3 AC5 10 HOH A 974 HOH A1036 SITE 1 AC6 4 HOH A1017 HOH A1043 HOH A1051 HOH A1129 SITE 1 AC7 3 GLN A 9 ALA A 10 1PE A 410 SITE 1 AC8 2 TRP A 52 1PE A 404 SITE 1 AC9 4 PHE A 123 PHE A 296 NA A 403 HOH A 769 SITE 1 BC1 9 PRO A 8 GLN A 9 ALA A 10 HIS A 43 SITE 2 BC1 9 ASP A 83 ARG A 334 LYS A 362 GLY A 363 SITE 3 BC1 9 NA A 407 SITE 1 BC2 5 GLU A 336 HOH A1015 HOH A1036 HOH A1060 SITE 2 BC2 5 HOH A1092 SITE 1 BC3 20 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 BC3 20 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 BC3 20 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 BC3 20 GLY A 347 ARG A 348 PHE A 374 0WV A 402 SITE 5 BC3 20 HOH A 503 HOH A 504 HOH A 506 HOH A 515 SITE 1 BC4 2 LYS A 4 LYS A 368 SITE 1 BC5 1 1PE A 415 SITE 1 BC6 5 ASP A 370 HIS A 380 ASP A 384 NA A 414 SITE 2 BC6 5 HOH A 820 SITE 1 BC7 2 ASP A 83 ASN A 126 SITE 1 BC8 1 1PE A 405 CRYST1 141.004 141.004 42.818 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023355 0.00000